TCONS_00066271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066271
Unique NameTCONS_00066271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066271 ID=TCONS_00066271|Name=TCONS_00066271|organism=Clytia hemisphaerica|type=transcript|length=365bp
CATTATTACAAAAAATTTACCAATCATCATATTAACAGGAATTGACccag
cccagctggcacacaaacgttgtttcaacgttcataacgtccatataacg
ttagatgaacgttgaaacaacactgtgtgccagctgggaggtTATATGCA
GGCAATTGGGTATTCAATTAATAAAGTTAGATGAAAATGGAACCTATCGT
GTAAACTTCACGTTATGAAAAGAGATCACCTTGGGTTTAAAGGCCATGGT
AAGATTACGCAACACTTTGGTATATATTTGgtacaaaatttcaagaaaaa
tatttgatgaatttgttgaattgtttgtttttattgctaAAGGAGGCTGG
CTCTTCCATTGCCAA
Run BLAST on NCBI

transcript from alignment at scaffold_451:251869..252233

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066271 ID=TCONS_00066271|Name=TCONS_00066271|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_451:251869..252233 (Clytia hemisphaerica)
TTGGCAATGGAAGAGCCAGCCTCCTTtagcaataaaaacaaacaattcaa
caaattcatcaaatatttttcttgaaattttgtacCAAATATATACCAAA
GTGTTGCGTAATCTTACCATGGCCTTTAAACCCAAGGTGATCTCTTTTCA
TAACGTGAAGTTTACACGATAGGTTCCATTTTCATCTAACTTTATTAATT
GAATACCCAATTGCCTGCATATAacctcccagctggcacacagtgttgtt
tcaacgttcatctaacgttatatggacgttatgaacgttgaaacaacgtt
tgtgtgccagctgggctggGTCAATTCCTGTTAATATGATGATTGGTAAA
TTTTTTGTAATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041473XLOC_041473Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066271-exon-scaffold_451-1491911889:251869..252233TCONS_00066271-exon-scaffold_451-1491911889:251869..252233Clytia hemisphaericaexon
TCONS_00066271-exon-scaffold_451-1510915933:251869..252233TCONS_00066271-exon-scaffold_451-1510915933:251869..252233Clytia hemisphaericaexon
TCONS_00066271-exon-scaffold_451-1575043694:251869..252233TCONS_00066271-exon-scaffold_451-1575043694:251869..252233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:251869..252233 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.257997	0.251922	0.613381	1.21175	2.92386	5.75548	3.2615	2.37382	0.460817	2.72631	2.76086	1.11907	3.35757	2.77428	0.512173	0.874935	0	1.02997	0.440803	0	0	0	0	0	2.1051	3.94674	0.252662	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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