TCONS_00066281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066281
Unique NameTCONS_00066281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066281 ID=TCONS_00066281|Name=TCONS_00066281|organism=Clytia hemisphaerica|type=transcript|length=523bp
NATTCTTATAAAGTTCTCCTCTCGTCTTACGGGGCGCTTTGGGTGGCTCC
TGCTCAAAAAGCTCCCTTATGCCCGGTAAATCTTTAGCCGCCCCGAAATA
CTTATAGCCTCTATTCCCTGGTAGTTCCTTTCCTTCATGATCAAGCATCC
GCGGGCCGACTTTTGCGTAATTCGGCCCTTCTAATTGAACAATACGTTCC
TCCCAGTGACGTTTCTCTCGTAATAGCTTATTAATCTCATCATTCAAATC
ACGGATCCGGAACTCACCCATTCCCGCATTTTGAATCtgtgaaacttttt
ttgatatCTCACGGATAATCTGGTGGCGCCACTTCTCCGCTTCCTTCAAA
TTGTTGCATTCCGTAGCTAGGAACGGCCGCCGGGTTGCCACTTGCGGTTT
GTCTTCCGCATTCATCATAGCCGTCCAACGGGACAAAATGGCCATTGCTT
TTTCCGCACTACGAGCCATGATGGATGACTATGGACTTAGgtcttgtttt
tttatttttatttagttttccTG
Run BLAST on NCBI

protein sequence of TCONS_00066281-protein

>TCONS_00066281-protein ID=TCONS_00066281-protein|Name=TCONS_00066281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQ
IIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPN
YAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGIRELFEQEPPKAPRKTR
GELYKN
Run BLAST on NCBI

transcript from alignment at scaffold_451:530928..531450

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066281 ID=TCONS_00066281|Name=TCONS_00066281|organism=Clytia hemisphaerica|type=transcript|length=523bp|location=Sequence derived from alignment at scaffold_451:530928..531450 (Clytia hemisphaerica)
CAggaaaactaaataaaaataaaaaaacaagacCTAAGTCCATAGTCATC
CATCATGGCTCGTAGTGCGGAAAAAGCAATGGCCATTTTGTCCCGTTGGA
CGGCTATGATGAATGCGGAAGACAAACCGCAAGTGGCAACCCGGCGGCCG
TTCCTAGCTACGGAATGCAACAATTTGAAGGAAGCGGAGAAGTGGCGCCA
CCAGATTATCCGTGAGatatcaaaaaaagtttcacaGATTCAAAATGCGG
GAATGGGTGAGTTCCGGATCCGTGATTTGAATGATGAGATTAATAAGCTA
TTACGAGAGAAACGTCACTGGGAGGAACGTATTGTTCAATTAGAAGGGCC
GAATTACGCAAAAGTCGGCCCGCGGATGCTTGATCATGAAGGAAAGGAAC
TACCAGGGAATAGAGGCTATAAGTATTTCGGGGCGGCTAAAGATTTACCG
GGCATAAGGGAGCTTTTTGAGCAGGAGCCACCCAAAGCGCCCCGTAAGAC
GAGAGGAGAACTTTATAAGAATN

Coding sequence (CDS) from alignment at scaffold_451:530928..531450

>TCONS_00066281 ID=TCONS_00066281|Name=TCONS_00066281|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_451:530928..531450 (Clytia hemisphaerica)
ATGGCTCGTAGTGCGGAAAAAGCAATGGCCATTTTGTCCCGTTGGACGGC
TATGATGAATGCGGAAGACAAACCGCAAGTGGCAACCCGGCGGCCGTTCC
TAGCTACGGAATGCAACAATTTGAAGGAAGCGGAGAAGTGGCGCCACCAG
ATTATCCGTGAGatatcaaaaaaagtttcacaGATTCAAAATGCGGGAAT
GGGTGAGTTCCGGATCCGTGATTTGAATGATGAGATTAATAAGCTATTAC
GAGAGAAACGTCACTGGGAGGAACGTATTGTTCAATTAGAAGGGCCGAAT
TACGCAAAAGTCGGCCCGCGGATGCTTGATCATGAAGGAAAGGAACTACC
AGGGAATAGAGGCTATAAGTATTTCGGGGCGGCTAAAGATTTACCGGGCA
TAAGGGAGCTTTTTGAGCAGGAGCCACCCAAAGCGCCCCGTAAGACGAGA
GGAGAACTTTATAAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041483XLOC_041483Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066281-proteinTCONS_00066281-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066281-exon-scaffold_451-1491911889:530928..531450TCONS_00066281-exon-scaffold_451-1491911889:530928..531450Clytia hemisphaericaexon
TCONS_00066281-exon-scaffold_451-1510915933:530928..531450TCONS_00066281-exon-scaffold_451-1510915933:530928..531450Clytia hemisphaericaexon
TCONS_00066281-exon-scaffold_451-1575043694:530928..531450TCONS_00066281-exon-scaffold_451-1575043694:530928..531450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:530928..531450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
65.6473	61.3115	70.4137	64.0193	43.9102	37.6174	41.7627	43.9801	25.5443	27.6551	21.0113	19.5601	14.2799	12.3123	20.4592	25.1543	34.4114	28.5566	8.36519	6.46195	15.4444	14.7346	32.8763	30.9841	25.5223	26.5931	13.0677	9.67322	10.6886	9.29536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009360Isy1
Vocabulary: Biological Process
TermDefinition
GO:0000350generation of catalytic spliceosome for second transesterification step
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000350 generation of catalytic spliceosome for second transesterification step
Blast
[Close]
BLAST of TCONS_00066281 vs. Swiss-Prot (Human)
Match: ISY1 (Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapiens GN=ISY1 PE=1 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.214e-74
Identity = 114/155 (73.55%), Postives = 127/155 (81.94%), Query Frame = -1 
Query:    5 MARSAEKAMAILSRWTAMMNAEDKPQVATRRPFLATECNNLKEAEKWRHQIIREISKKVSQIQNAGMGEFRIRDLNDEINKLLREKRHWEERIVQLEGPNYAKVGPRMLDHEGKELPGNRGYKYFGAAKDLPGIRELFEQEPPKAPRKTRGELYK 469
            MAR+AEKAM  L+R+      E K  V  RRPFLA+EC  L +AEKWR QII EISKKV+QIQNAG+GEFRIRDLNDEINKLLREK HWE RI +L GP+Y KVGP+MLDHEGKE+PGNRGYKYFGAAKDLPG+RELFE+EP   PRKTR EL K
Sbjct:    1 MARNAEKAMTALARFRQAQLEEGK--VKERRPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPLPPPRKTRAELMK 153
The following BLAST results are available for this feature:
BLAST of TCONS_00066281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISY12.214e-7473.55Pre-mRNA-splicing factor ISY1 homolog OS=Homo sapi... [more]
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