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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066284 ID=TCONS_00066284|Name=TCONS_00066284|organism=Clytia hemisphaerica|type=transcript|length=2072bp
ATGACATTTTATATAGTGTGTGTGAGTTAAATAATGAATAGTTCAAAAGC
TTAAGACTATCATTTACTTAACTGTTTTCTTCAAGCACAGAATCTAATAC
AAGACACCTTGTAAGGATTTGGGTGAGACATTTAAGCAATAGAAAATAGT
TGGGGAATATTGATTATAGTAGGTTTGTTGTTCGTTGATTTGGttgcttt
aatgctttaatttATATATTGTATTGTGTCAAAAATTTAGCTCGTTCATC
ATTTGgttcattctttcatttctttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgttactgaaaaaacttactttcttcattttagacaaaaaa
taaagctagacaacaacaacaaacaaaacaaaacaaaacatgcTACACAA
AAGCTACATCATGTTAGCCTCTATATTTATCACAATACTACCGGCCACAG
TATACTCATTCGACTTGAGTTGCTTCGCTCTTAAAGAAACCGGAAAAGTC
CATTTCCAAATATCCTCCGGTAGGGCAATCGAAAATATCCATTTCTCCAC
CAAAACTCCGAATATTGGTGATCCCTGGATCCAAGAAAAAGGTTGCCAAC
TGATCGAGAGCTCCGAACTCGAGTGCCCGAACGATGACCGTAAGACACGT
CCGCAATCGTTCCGTATTGATGTTACGTTTACAGATAATACAAATTCGTC
TAAGGAATTATGGTATTATGATTGCTATAAGAAGCATGGTGTGGAGAGCT
TAAAAATGAGCAATGTTGAATGGAATAGTTTTGATATCGAATGGGAGCAC
TACGCGATTGATGACATTTTCATTAAAGATGATTTCGTCTCGATAACTGA
TGATGAGACTTTGAAAGTCATTAAGGaggagaaaaattacaaaaaacagg
TGTTGTCATATACAAGTGCTGGGCCAGATTCGAACTATACAGTGTGTGTT
GGTACGAAATTTTACAGTTTCTTAAAAGGGTCCGCCGAGCGTGACACTAA
AGAGAAATGTATTACAGTAACAACGCCAGGTAAACCAAAAGACGAAACTA
CAGACTTGAAAACACCTTTATTAGCTGTTGGTATTGGGATTCTATGTTTG
GTTTTACTATGTTTAATTTTCGTCATTTATAACAAGAAATGTAAACCCGG
TGGTGATCATGGCTACGATATGAACAAAGAGGAGGCGTTGATGGGCGGTG
ACCGCCCAAATGCGGAGGGCGAAGAAATGAAAGTTGTAGAATTTGATGAG
ACGAAGGACACTGATGATACAGACGCCCTAGCTAACGGACATAATGAAGA
GGCGTGAAGGGCGTTGGGCGCTGATTTCTAAAACTGTTTAAATTTCATGA
GTTATTTTTATGGCTGCCTTAAGCTGACAATGAAGTAAAACGGTGAACAA
GACCTAACCAGACGCAAATCTCACAGTCAAATCCTAAAACTCGTGGATTT
TGATGACTAAACAGACAGATTTGGCGGACAGTAATGGTCCTAGATGACAG
GTGACATTAACGCCCGTCTTGTTGATATTGTGGGCGTTAGACGGACCAGA
AACGGAGAACTTTCTCCTCtaaaaagttgaataaaaatttaaaactcaAT
AACTTTAAAAGAAACGTATTTATAAGTTAATAGGATAATCAacaaatttt
aattattttttatgacaACACCCTTAATATGTATGTGAGATaggattttt
tgaagaaaacgCTAAAGAAAATATCATATCAATAGATCGAAATGGTTCTA
TTTGTTTTAGTAGTTTGATTTTGAGCCTAAATCGCAAGTTATAAAGGTCT
ACAGACCTCGAAACACAAAAACGCCATACTAGGAATTTCCTTAATGACCA
CAATGAtatagcgaccgtagtgcagtggtagagcatcctgctacggtgcg
caaggttgtgggttcaacccccagccgggtcataccaaagattcccaaaa
tgatacttgatgcctctctgcttgatgctcagcaattaagagaaggatca
aagAAAAGTAGgggaaatccag Run BLAST on NCBI protein sequence of TCONS_00066284-protein >TCONS_00066284-protein ID=TCONS_00066284-protein|Name=TCONS_00066284-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MLHKSYIMLASIFITILPATVYSFDLSCFALKETGKVHFQISSGRAIENI
HFSTKTPNIGDPWIQEKGCQLIESSELECPNDDRKTRPQSFRIDVTFTDN
TNSSKELWYYDCYKKHGVESLKMSNVEWNSFDIEWEHYAIDDIFIKDDFV
SITDDETLKVIKEEKNYKKQVLSYTSAGPDSNYTVCVGTKFYSFLKGSAE
RDTKEKCITVTTPGKPKDETTDLKTPLLAVGIGILCLVLLCLIFVIYNKK
CKPGGDHGYDMNKEEALMGGDRPNAEGEEMKVVEFDETKDTDDTDALANG
HNEEA Run BLAST on NCBI transcript from alignment at scaffold_451:585955..588026 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066284 ID=TCONS_00066284|Name=TCONS_00066284|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at scaffold_451:585955..588026 (Clytia hemisphaerica)
ctggatttcccCTACTTTTctttgatccttctcttaattgctgagcatca
agcagagaggcatcaagtatcattttgggaatctttggtatgacccggct
gggggttgaacccacaaccttgcgcaccgtagcaggatgctctaccactg
cactacggtcgctataTCATTGTGGTCATTAAGGAAATTCCTAGTATGGC
GTTTTTGTGTTTCGAGGTCTGTAGACCTTTATAACTTGCGATTTAGGCTC
AAAATCAAACTACTAAAACAAATAGAACCATTTCGATCTATTGATATGAT
ATTTTCTTTAGcgttttcttcaaaaaatcctATCTCACATACATATTAAG
GGTGTtgtcataaaaaataattaaaatttgtTGATTATCCTATTAACTTA
TAAATACGTTTCTTTTAAAGTTATtgagttttaaatttttattcaacttt
ttaGAGGAGAAAGTTCTCCGTTTCTGGTCCGTCTAACGCCCACAATATCA
ACAAGACGGGCGTTAATGTCACCTGTCATCTAGGACCATTACTGTCCGCC
AAATCTGTCTGTTTAGTCATCAAAATCCACGAGTTTTAGGATTTGACTGT
GAGATTTGCGTCTGGTTAGGTCTTGTTCACCGTTTTACTTCATTGTCAGC
TTAAGGCAGCCATAAAAATAACTCATGAAATTTAAACAGTTTTAGAAATC
AGCGCCCAACGCCCTTCACGCCTCTTCATTATGTCCGTTAGCTAGGGCGT
CTGTATCATCAGTGTCCTTCGTCTCATCAAATTCTACAACTTTCATTTCT
TCGCCCTCCGCATTTGGGCGGTCACCGCCCATCAACGCCTCCTCTTTGTT
CATATCGTAGCCATGATCACCACCGGGTTTACATTTCTTGTTATAAATGA
CGAAAATTAAACATAGTAAAACCAAACATAGAATCCCAATACCAACAGCT
AATAAAGGTGTTTTCAAGTCTGTAGTTTCGTCTTTTGGTTTACCTGGCGT
TGTTACTGTAATACATTTCTCTTTAGTGTCACGCTCGGCGGACCCTTTTA
AGAAACTGTAAAATTTCGTACCAACACACACTGTATAGTTCGAATCTGGC
CCAGCACTTGTATATGACAACAcctgttttttgtaatttttctcctCCTT
AATGACTTTCAAAGTCTCATCATCAGTTATCGAGACGAAATCATCTTTAA
TGAAAATGTCATCAATCGCGTAGTGCTCCCATTCGATATCAAAACTATTC
CATTCAACATTGCTCATTTTTAAGCTCTCCACACCATGCTTCTTATAGCA
ATCATAATACCATAATTCCTTAGACGAATTTGTATTATCTGTAAACGTAA
CATCAATACGGAACGATTGCGGACGTGTCTTACGGTCATCGTTCGGGCAC
TCGAGTTCGGAGCTCTCGATCAGTTGGCAACCTTTTTCTTGGATCCAGGG
ATCACCAATATTCGGAGTTTTGGTGGAGAAATGGATATTTTCGATTGCCC
TACCGGAGGATATTTGGAAATGGACTTTTCCGGTTTCTTTAAGAGCGAAG
CAACTCAAGTCGAATGAGTATACTGTGGCCGGTAGTATTGTGATAAATAT
AGAGGCTAACATGATGTAGCTTTTGTGTAgcatgttttgttttgttttgt
ttgttgttgttgtctagctttattttttgtctaaaatgaagaaagtaagt
tttttcagtaacgaacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaaa
gaaatgaaagaatgaacCAAATGATGAACGAGCTAAATTTTTGACACAAT
ACAATATATaaattaaagcattaaagcaaCCAAATCAACGAACAACAAAC
CTACTATAATCAATATTCCCCAACTATTTTCTATTGCTTAAATGTCTCAC
CCAAATCCTTACAAGGTGTCTTGTATTAGATTCTGTGCTTGAAGAAAACA
GTTAAGTAAATGATAGTCTTAAGCTTTTGAACTATTCATTATTTAACTCA
CACACACTATATAAAATGTCAT Coding sequence (CDS) from alignment at scaffold_451:585955..588026 >TCONS_00066284 ID=TCONS_00066284|Name=TCONS_00066284|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_451:585955..588026 (Clytia hemisphaerica)
TCACGCCTCTTCATTATGTCCGTTAGCTAGGGCGTCTGTATCATCAGTGT
CCTTCGTCTCATCAAATTCTACAACTTTCATTTCTTCGCCCTCCGCATTT
GGGCGGTCACCGCCCATCAACGCCTCCTCTTTGTTCATATCGTAGCCATG
ATCACCACCGGGTTTACATTTCTTGTTATAAATGACGAAAATTAAACATA
GTAAAACCAAACATAGAATCCCAATACCAACAGCTAATAAAGGTGTTTTC
AAGTCTGTAGTTTCGTCTTTTGGTTTACCTGGCGTTGTTACTGTAATACA
TTTCTCTTTAGTGTCACGCTCGGCGGACCCTTTTAAGAAACTGTAAAATT
TCGTACCAACACACACTGTATAGTTCGAATCTGGCCCAGCACTTGTATAT
GACAACAcctgttttttgtaatttttctcctCCTTAATGACTTTCAAAGT
CTCATCATCAGTTATCGAGACGAAATCATCTTTAATGAAAATGTCATCAA
TCGCGTAGTGCTCCCATTCGATATCAAAACTATTCCATTCAACATTGCTC
ATTTTTAAGCTCTCCACACCATGCTTCTTATAGCAATCATAATACCATAA
TTCCTTAGACGAATTTGTATTATCTGTAAACGTAACATCAATACGGAACG
ATTGCGGACGTGTCTTACGGTCATCGTTCGGGCACTCGAGTTCGGAGCTC
TCGATCAGTTGGCAACCTTTTTCTTGGATCCAGGGATCACCAATATTCGG
AGTTTTGGTGGAGAAATGGATATTTTCGATTGCCCTACCGGAGGATATTT
GGAAATGGACTTTTCCGGTTTCTTTAAGAGCGAAGCAACTCAAGTCGAAT
GAGTATACTGTGGCCGGTAGTATTGTGATAAATATAGAGGCTAACATGAT
GTAGCTTTTGTGTAgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066284-exon-scaffold_451-1491911889:585955..588026 | TCONS_00066284-exon-scaffold_451-1491911889:585955..588026 | Clytia hemisphaerica | exon |
| TCONS_00066284-exon-scaffold_451-1510915933:585955..588026 | TCONS_00066284-exon-scaffold_451-1510915933:585955..588026 | Clytia hemisphaerica | exon |
| TCONS_00066284-exon-scaffold_451-1575043694:585955..588026 | TCONS_00066284-exon-scaffold_451-1575043694:585955..588026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:585955..588026 . |
Blast
The following BLAST results are available for this feature:
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