TCONS_00066290 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066290
Unique NameTCONS_00066290
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066290 ID=TCONS_00066290|Name=TCONS_00066290|organism=Clytia hemisphaerica|type=transcript|length=368bp
TCATACCAAGACTTTGAGTATACAGAACCTTGATAACGATTCACAACGTT
TTTCATTTGTTGAAGGTAATCACAATCTCCATTGAAATCTTCATTTGTAT
TGATTTGTTGGACAAAatcattccattgttttgcctCCTCGTTTTGTATA
TAATCTTTATCGTAAAGGTACctatttgtttgaattttttctctTACATT
AATGTCACTCAATGTTCCATGTAATTTACCGACGGTCTTTGcgaatgttt
tcaaattctCAACATCTTTTCTCTGTTCCTTTAAAGTCTGCTGCTCAATG
TCTTTAAGATTTTCCTTCTCTAATAATAGAAGCTTTTGATGATTATTCAA
AACATTGTCATTTTGTTG
Run BLAST on NCBI

protein sequence of TCONS_00066290-protein

>TCONS_00066290-protein ID=TCONS_00066290-protein|Name=TCONS_00066290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
QQNDNVLNNHQKLLLLEKENLKDIEQQTLKEQRKDVENLKTFAKTVGKLH
GTLSDINVREKIQTNRYLYDKDYIQNEEAKQWNDFVQQINTNEDFNGDCD
YLQQMKNVVNRYQGSVYSKSWY
Run BLAST on NCBI

transcript from alignment at scaffold_451:883862..884229

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066290 ID=TCONS_00066290|Name=TCONS_00066290|organism=Clytia hemisphaerica|type=transcript|length=368bp|location=Sequence derived from alignment at scaffold_451:883862..884229 (Clytia hemisphaerica)
CAACAAAATGACAATGTTTTGAATAATCATCAAAAGCTTCTATTATTAGA
GAAGGAAAATCTTAAAGACATTGAGCAGCAGACTTTAAAGGAACAGAGAA
AAGATGTTGagaatttgaaaacattcgCAAAGACCGTCGGTAAATTACAT
GGAACATTGAGTGACATTAATGTAagagaaaaaattcaaacaaatagGTA
CCTTTACGATAAAGATTATATACAAAACGAGGaggcaaaacaatggaatg
atTTTGTCCAACAAATCAATACAAATGAAGATTTCAATGGAGATTGTGAT
TACCTTCAACAAATGAAAAACGTTGTGAATCGTTATCAAGGTTCTGTATA
CTCAAAGTCTTGGTATGA

Coding sequence (CDS) from alignment at scaffold_451:883862..884229

>TCONS_00066290 ID=TCONS_00066290|Name=TCONS_00066290|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_451:883862..884229 (Clytia hemisphaerica)
CAACAAAATGACAATGTTTTGAATAATCATCAAAAGCTTCTATTATTAGA
GAAGGAAAATCTTAAAGACATTGAGCAGCAGACTTTAAAGGAACAGAGAA
AAGATGTTGagaatttgaaaacattcgCAAAGACCGTCGGTAAATTACAT
GGAACATTGAGTGACATTAATGTAagagaaaaaattcaaacaaatagGTA
CCTTTACGATAAAGATTATATACAAAACGAGGaggcaaaacaatggaatg
atTTTGTCCAACAAATCAATACAAATGAAGATTTCAATGGAGATTGTGAT
TACCTTCAACAAATGAAAAACGTTGTGAATCGTTATCAAGGTTCTGTATA
CTCAAAGTCTTGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041492XLOC_041492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066290-exon-scaffold_451-1491911889:883862..884229TCONS_00066290-exon-scaffold_451-1491911889:883862..884229Clytia hemisphaericaexon
TCONS_00066290-exon-scaffold_451-1510915933:883862..884229TCONS_00066290-exon-scaffold_451-1510915933:883862..884229Clytia hemisphaericaexon
TCONS_00066290-exon-scaffold_451-1575043694:883862..884229TCONS_00066290-exon-scaffold_451-1575043694:883862..884229Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066290-proteinTCONS_00066290-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:883862..884229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.446261	0.301116	0	0.398186	0.300904	0	0.573739	1.47669	1.12817	0.292186	3.7624	1.04023	4.56202	7.46186	10.4248	8.70891	1.83628	3.85882	8.12467	10.845	8.01574	8.37884	5.67697	7.62337	6.01509	9.30648	4.58269	6.45504	28.4615	24.4864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066290 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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