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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066292 ID=TCONS_00066292|Name=TCONS_00066292|organism=Clytia hemisphaerica|type=transcript|length=1022bp
aatttgattccTTTCCCTGTGCAACATAATAAAGGCTTGTTCCTTTAGAG
GTATAACTACAATCTATGATAGAAAGTAAAAAAGAGGAAATCTTGTGACT
CTTAGATaataacaaaatacaaaaaatcgaCAGCACCAAGCTAACAGAAT
GTTCTATTTATTTTCTCataaataatataatataatccATACCATTTCCC
AGAAAATACATTTAAATCATACAAAAGTGTTGACTAAAATCAAAAGGATG
TAACACCCAATTGACTATATCGTATTGGTTTTCGCTGTGTCTTATCTCTG
AACAGATGAATAAAGTCTATCACACCAATAATGTTTATAATAATTCCACA
AGCAAGAGTTACCGGTGAATTACTGGGTCTCACGAAAGCAGGAATGGTTA
ATATGATATACATCAAGAGTTTCTTCCAAGTTGTGATATTTTCAAGAAAC
TCCCATAACCGTTGTGCTTTTGTATCTTTACGTTCTACATGCCCGAACAA
CCAATCAAATATAAACATTGTTTCAAAGAAAGTTACAATTGTTGCTAAAA
ACACCATGTAAAACCCTATGTTGATTTGTTCTTTGATTGCAAAAATCATG
ATTAAGCACCATGTTAAAAGAACCAAACAAAGTGAAAATGCTCTGGAGAT
TGTAGTCCAGTGGCGTACAagaaagggtttgtttctagATTCATCGGTTA
GCTCACCATGTAGAGAGGTCCGTGATGATGAACACCACCCACTTCGGTTA
TCAATTGATGTGAAATTGTCAATATTGATACCAATGGTCCCACGCTTTCC
ACCCATTTATGATCAAAGGcattcaaaacaaaccaaataaTCTACTATAA
AGTATGTGAGAATATAATGTTACTTtctctgaaaaataaaactacTAGAC
GTTTCGTACAGTTATAAAAACTGAGTTTGCTTTATAATAGCCATAGAGAC
TCGAGAGGTCTTATAAAAGACCTTTAACCCTGATATATAcaacattggca
cttaaagggttaagtgAACGAG Run BLAST on NCBI protein sequence of TCONS_00066292-protein >TCONS_00066292-protein ID=TCONS_00066292-protein|Name=TCONS_00066292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGGKRGTIGINIDNFTSIDNRSGWCSSSRTSLHGELTDESRNKPFLVRHW
TTISRAFSLCLVLLTWCLIMIFAIKEQINIGFYMVFLATIVTFFETMFIF
DWLFGHVERKDTKAQRLWEFLENITTWKKLLMYIILTIPAFVRPSNSPVT
LACGIIINIIGVIDFIHLFRDKTQRKPIRYSQLGVTSF Run BLAST on NCBI transcript from alignment at scaffold_451:910900..911921 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066292 ID=TCONS_00066292|Name=TCONS_00066292|organism=Clytia hemisphaerica|type=transcript|length=1022bp|location=Sequence derived from alignment at scaffold_451:910900..911921 (Clytia hemisphaerica)
CTCGTTcacttaaccctttaagtgccaatgttgTATATATCAGGGTTAAA
GGTCTTTTATAAGACCTCTCGAGTCTCTATGGCTATTATAAAGCAAACTC
AGTTTTTATAACTGTACGAAACGTCTAgtagttttatttttcagagaAAG
TAACATTATATTCTCACATACTTTATAGTAGAttatttggtttgttttga
atgCCTTTGATCATAAATGGGTGGAAAGCGTGGGACCATTGGTATCAATA
TTGACAATTTCACATCAATTGATAACCGAAGTGGGTGGTGTTCATCATCA
CGGACCTCTCTACATGGTGAGCTAACCGATGAATctagaaacaaaccctt
tctTGTACGCCACTGGACTACAATCTCCAGAGCATTTTCACTTTGTTTGG
TTCTTTTAACATGGTGCTTAATCATGATTTTTGCAATCAAAGAACAAATC
AACATAGGGTTTTACATGGTGTTTTTAGCAACAATTGTAACTTTCTTTGA
AACAATGTTTATATTTGATTGGTTGTTCGGGCATGTAGAACGTAAAGATA
CAAAAGCACAACGGTTATGGGAGTTTCTTGAAAATATCACAACTTGGAAG
AAACTCTTGATGTATATCATATTAACCATTCCTGCTTTCGTGAGACCCAG
TAATTCACCGGTAACTCTTGCTTGTGGAATTATTATAAACATTATTGGTG
TGATAGACTTTATTCATCTGTTCAGAGATAAGACACAGCGAAAACCAATA
CGATATAGTCAATTGGGTGTTACATCCTTTTGATTTTAGTCAACACTTTT
GTATGATTTAAATGTATTTTCTGGGAAATGGTATggattatattatatta
tttatGAGAAAATAAATAGAACATTCTGTTAGCTTGGTGCTGtcgatttt
ttgtattttgttattATCTAAGAGTCACAAGATTTCCTCTTTTTTACTTT
CTATCATAGATTGTAGTTATACCTCTAAAGGAACAAGCCTTTATTATGTT
GCACAGGGAAAggaatcaaatt Coding sequence (CDS) from alignment at scaffold_451:910900..911921 >TCONS_00066292 ID=TCONS_00066292|Name=TCONS_00066292|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_451:910900..911921 (Clytia hemisphaerica)
ATGGGTGGAAAGCGTGGGACCATTGGTATCAATATTGACAATTTCACATC
AATTGATAACCGAAGTGGGTGGTGTTCATCATCACGGACCTCTCTACATG
GTGAGCTAACCGATGAATctagaaacaaaccctttctTGTACGCCACTGG
ACTACAATCTCCAGAGCATTTTCACTTTGTTTGGTTCTTTTAACATGGTG
CTTAATCATGATTTTTGCAATCAAAGAACAAATCAACATAGGGTTTTACA
TGGTGTTTTTAGCAACAATTGTAACTTTCTTTGAAACAATGTTTATATTT
GATTGGTTGTTCGGGCATGTAGAACGTAAAGATACAAAAGCACAACGGTT
ATGGGAGTTTCTTGAAAATATCACAACTTGGAAGAAACTCTTGATGTATA
TCATATTAACCATTCCTGCTTTCGTGAGACCCAGTAATTCACCGGTAACT
CTTGCTTGTGGAATTATTATAAACATTATTGGTGTGATAGACTTTATTCA
TCTGTTCAGAGATAAGACACAGCGAAAACCAATACGATATAGTCAATTGG
GTGTTACATCCTTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066292-exon-scaffold_451-1491911889:910900..911921 | TCONS_00066292-exon-scaffold_451-1491911889:910900..911921 | Clytia hemisphaerica | exon |
| TCONS_00066292-exon-scaffold_451-1510915933:910900..911921 | TCONS_00066292-exon-scaffold_451-1510915933:910900..911921 | Clytia hemisphaerica | exon |
| TCONS_00066292-exon-scaffold_451-1575043694:910900..911921 | TCONS_00066292-exon-scaffold_451-1575043694:910900..911921 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:910900..911921 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0042626 | ATPase activity, coupled to transmembrane movement of substances |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0042626 |
ATPase activity, coupled to transmembrane movement of substances |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
The following BLAST results are available for this feature:
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