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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066300 ID=TCONS_00066300|Name=TCONS_00066300|organism=Clytia hemisphaerica|type=transcript|length=1059bp
AGTGATTTGATCTTGATTAAAAATTATACttacttaatttttttccggac
actagtgtaatttacagaccaggatgaaaaggctaaaaatgggtaaaatg
tcaaaaatccaAACTTCTCTGCAGAAAATTATAAAACTTTGGTTAAGAAA
AAGTATagacaaaaaagttaaaactatGGTCTGGAAATTATGACTATATA
CATTTCCAGATGACAAAATTTCACATGGAACAGAACCCACACCAGGTTTC
CAAATCATCATCGATGCTGTGtgaatttaaattttcagataatTCGTTTT
CACAATTTGTACACTGACACATCTCGGAACATTTCAAGTTGTTTTTCTTA
CATTTGCACCGATTATCAGCACATTTAACTGTCTTGCAACTACATACAGT
CAAATGAATGATTGATTGTGGTGCAGGTAACAATGCAGTCGTCACTGGCT
CATAAGATTCATCGACATCCTTTTTCCAACCAAAATCAAGCGGATCGGGT
AATATTTGAAACGAAATATGCGATTGTTTCCAAACAGTATTCATATAATG
TCCACGAAGACACTTTTGACGAAATGCCTCTAAAGTTGGTGGCAACTTGT
GTGACTCTGCTTGTTTCTTTGAGAACATCCGCCAGCGAAGATCAGCGAGG
CTTTGAATTCCTTGCGGTACTTTATTCCTGCAGTAGAGCTGCACAACATA
CTTCTCAAGGGATTTCACAACATCAGATGTTAGttgagagctacttccaa
gttGTGAAAATCCCTGAAGCACATCGTCGTCGACTAACAAGAATGTTTCC
CAGCAAGAAAGCTTCGTGTAACCTAAAAATCTGCCAGTTTGATCACAACC
TGTAATCGCGTGGAAACCCAACAAAGCCTTGCAAACATTCAAAGGTAGCT
GACTGTGAATTTTTCTGAGTTCAAATTCACGGTTGACTGTTTTGAATATA
GTCGAGCTACATAAGCTTTCAAAATAATGCAGAAGAATGAGCAGCACATC
TGTATCGGAACAAAGGATTACCAACTCCGAAAACGGGTCTCTCTTCGCGA
CGTCGAGTG Run BLAST on NCBI protein sequence of TCONS_00066300-protein >TCONS_00066300-protein ID=TCONS_00066300-protein|Name=TCONS_00066300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp
LDVAKRDPFSELVILCSDTDVLLILLHYFESLCSSTIFKTVNREFELRKI
HSQLPLNVCKALLGFHAITGCDQTGRFLGYTKLSCWETFLLVDDDVLQGF
SQLGSSSQLTSDVVKSLEKYVVQLYCRNKVPQGIQSLADLRWRMFSKKQA
ESHKLPPTLEAFRQKCLRGHYMNTVWKQSHISFQILPDPLDFGWKKDVDE
SYEPVTTALLPAPQSIIHLTVCSCKTVKCADNRCKCKKNNLKCSEMCQCT
NCENELSENLNSHSIDDDLETWCGFCSM Run BLAST on NCBI transcript from alignment at scaffold_451:1144847..1145905 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066300 ID=TCONS_00066300|Name=TCONS_00066300|organism=Clytia hemisphaerica|type=transcript|length=1059bp|location=Sequence derived from alignment at scaffold_451:1144847..1145905 (Clytia hemisphaerica)
CACTCGACGTCGCGAAGAGAGACCCGTTTTCGGAGTTGGTAATCCTTTGT
TCCGATACAGATGTGCTGCTCATTCTTCTGCATTATTTTGAAAGCTTATG
TAGCTCGACTATATTCAAAACAGTCAACCGTGAATTTGAACTCAGAAAAA
TTCACAGTCAGCTACCTTTGAATGTTTGCAAGGCTTTGTTGGGTTTCCAC
GCGATTACAGGTTGTGATCAAACTGGCAGATTTTTAGGTTACACGAAGCT
TTCTTGCTGGGAAACATTCTTGTTAGTCGACGACGATGTGCTTCAGGGAT
TTTCACaacttggaagtagctctcaaCTAACATCTGATGTTGTGAAATCC
CTTGAGAAGTATGTTGTGCAGCTCTACTGCAGGAATAAAGTACCGCAAGG
AATTCAAAGCCTCGCTGATCTTCGCTGGCGGATGTTCTCAAAGAAACAAG
CAGAGTCACACAAGTTGCCACCAACTTTAGAGGCATTTCGTCAAAAGTGT
CTTCGTGGACATTATATGAATACTGTTTGGAAACAATCGCATATTTCGTT
TCAAATATTACCCGATCCGCTTGATTTTGGTTGGAAAAAGGATGTCGATG
AATCTTATGAGCCAGTGACGACTGCATTGTTACCTGCACCACAATCAATC
ATTCATTTGACTGTATGTAGTTGCAAGACAGTTAAATGTGCTGATAATCG
GTGCAAATGTAAGAAAAACAACTTGAAATGTTCCGAGATGTGTCAGTGTA
CAAATTGTGAAAACGAattatctgaaaatttaaattcaCACAGCATCGAT
GATGATTTGGAAACCTGGTGTGGGTTCTGTTCCATGTGAAATTTTGTCAT
CTGGAAATGTATATAGTCATAATTTCCAGACCatagttttaacttttttg
tctATACTTTTTCTTAACCAAAGTTTTATAATTTTCTGCAGAGAAGTTtg
gatttttgacattttacccatttttagccttttcatcctggtctgtaaat
tacactagtgtccggaaaaaaattaagtaaGTATAATTTTTAATCAAGAT
CAAATCACT Coding sequence (CDS) from alignment at scaffold_451:1144847..1145905 >TCONS_00066300 ID=TCONS_00066300|Name=TCONS_00066300|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_451:1144847..1145905 (Clytia hemisphaerica)
CTCGACGTCGCGAAGAGAGACCCGTTTTCGGAGTTGGTAATCCTTTGTTC
CGATACAGATGTGCTGCTCATTCTTCTGCATTATTTTGAAAGCTTATGTA
GCTCGACTATATTCAAAACAGTCAACCGTGAATTTGAACTCAGAAAAATT
CACAGTCAGCTACCTTTGAATGTTTGCAAGGCTTTGTTGGGTTTCCACGC
GATTACAGGTTGTGATCAAACTGGCAGATTTTTAGGTTACACGAAGCTTT
CTTGCTGGGAAACATTCTTGTTAGTCGACGACGATGTGCTTCAGGGATTT
TCACaacttggaagtagctctcaaCTAACATCTGATGTTGTGAAATCCCT
TGAGAAGTATGTTGTGCAGCTCTACTGCAGGAATAAAGTACCGCAAGGAA
TTCAAAGCCTCGCTGATCTTCGCTGGCGGATGTTCTCAAAGAAACAAGCA
GAGTCACACAAGTTGCCACCAACTTTAGAGGCATTTCGTCAAAAGTGTCT
TCGTGGACATTATATGAATACTGTTTGGAAACAATCGCATATTTCGTTTC
AAATATTACCCGATCCGCTTGATTTTGGTTGGAAAAAGGATGTCGATGAA
TCTTATGAGCCAGTGACGACTGCATTGTTACCTGCACCACAATCAATCAT
TCATTTGACTGTATGTAGTTGCAAGACAGTTAAATGTGCTGATAATCGGT
GCAAATGTAAGAAAAACAACTTGAAATGTTCCGAGATGTGTCAGTGTACA
AATTGTGAAAACGAattatctgaaaatttaaattcaCACAGCATCGATGA
TGATTTGGAAACCTGGTGTGGGTTCTGTTCCATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066300-exon-scaffold_451-1491911889:1144847..1145905 | TCONS_00066300-exon-scaffold_451-1491911889:1144847..1145905 | Clytia hemisphaerica | exon |
| TCONS_00066300-exon-scaffold_451-1510915933:1144847..1145905 | TCONS_00066300-exon-scaffold_451-1510915933:1144847..1145905 | Clytia hemisphaerica | exon |
| TCONS_00066300-exon-scaffold_451-1575043694:1144847..1145905 | TCONS_00066300-exon-scaffold_451-1575043694:1144847..1145905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1144847..1145905 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR033467 | Tesmin/TSO1-like_CXC |
Blast
The following BLAST results are available for this feature:
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