TCONS_00066304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066304
Unique NameTCONS_00066304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length814

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066304 ID=TCONS_00066304|Name=TCONS_00066304|organism=Clytia hemisphaerica|type=transcript|length=814bp
TGATCTTCTACGATTCTGGGTGCAGCGATTTTGTTGTACGTGACCACGTG
GTCGATCAATTGGAACCGAGAGCCAGACTTCAAGAAAAGGGACCAATCAA
GCTTGGTGGTGTTGGCGACGTATCAACACTGTCATCCAAGGGCATCTACA
GTATCGATCTACCAACCTTTGACGGCTCAAATGTGACACTTACCGGTGTC
GCTCTCAAGAAGATCACTTCAACATTTCCAAATTACCCTCTCGATGGTCA
AGTCAAAGATGATATCCATGATGCATTTCGTCGGAGTGGAGAGAGTCCGT
CAACATTACCAAAGCTTCCATCATCCGTCGGAGGTGACGTCGACTTTATG
ATTGGCATACGATACCTAGGATACCACCCCAAGGTGATCTTCCAAATGCC
TTCAGGACTCACCATTTACAAATCATTGTTCAAAAATCTAGATGGCAGTC
GTGGTATAATTGGAGGACCACACGAAATATTCTCAATGATCGTGTTACAA
TCTGGGagatcaaaaatttgaagcttGTTACTAACAGACTGACGTGGGAT
ATCTCCCTTCGTTAATTTTCTATGACAGGTTGTGCATACGTAGAAATTAC
CATCGAACGAGGTTAcaggattaaaattttctatttcttcaaagtTGATC
AATGAGTACTTTTGTTCATCAAAACCAAACACAGATTTTTTATACATACT
GCGGTTACACATCACACAGATGTAAGAAGGACCCTCCTGTTTTTTCTGCC
GGAAGTTTTCGACCCTTTTTCCTACATTAAGTTTCTTGTTAGCTTTGTAG
ACTTTgcgcttttt
Run BLAST on NCBI

protein sequence of TCONS_00066304-protein

>TCONS_00066304-protein ID=TCONS_00066304-protein|Name=TCONS_00066304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
IFYDSGCSDFVVRDHVVDQLEPRARLQEKGPIKLGGVGDVSTLSSKGIYS
IDLPTFDGSNVTLTGVALKKITSTFPNYPLDGQVKDDIHDAFRRSGESPS
TLPKLPSSVGGDVDFMIGIRYLGYHPKVIFQMPSGLTIYKSLFKNLDGSR
GIIGGPHEIFSMIVLQSGRSKI
Run BLAST on NCBI

transcript from alignment at scaffold_451:1395542..1396355

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066304 ID=TCONS_00066304|Name=TCONS_00066304|organism=Clytia hemisphaerica|type=transcript|length=814bp|location=Sequence derived from alignment at scaffold_451:1395542..1396355 (Clytia hemisphaerica)
aaaaagcgcAAAGTCTACAAAGCTAACAAGAAACTTAATGTAGGAAAAAG
GGTCGAAAACTTCCGGCAGAAAAAACAGGAGGGTCCTTCTTACATCTGTG
TGATGTGTAACCGCAGTATGTATAAAAAATCTGTGTTTGGTTTTGATGAA
CAAAAGTACTCATTGATCAactttgaagaaatagaaaattttaatcctgT
AACCTCGTTCGATGGTAATTTCTACGTATGCACAACCTGTCATAGAAAAT
TAACGAAGGGAGATATCCCACGTCAGTCTGTTAGTAACaagcttcaaatt
tttgatctCCCAGATTGTAACACGATCATTGAGAATATTTCGTGTGGTCC
TCCAATTATACCACGACTGCCATCTAGATTTTTGAACAATGATTTGTAAA
TGGTGAGTCCTGAAGGCATTTGGAAGATCACCTTGGGGTGGTATCCTAGG
TATCGTATGCCAATCATAAAGTCGACGTCACCTCCGACGGATGATGGAAG
CTTTGGTAATGTTGACGGACTCTCTCCACTCCGACGAAATGCATCATGGA
TATCATCTTTGACTTGACCATCGAGAGGGTAATTTGGAAATGTTGAAGTG
ATCTTCTTGAGAGCGACACCGGTAAGTGTCACATTTGAGCCGTCAAAGGT
TGGTAGATCGATACTGTAGATGCCCTTGGATGACAGTGTTGATACGTCGC
CAACACCACCAAGCTTGATTGGTCCCTTTTCTTGAAGTCTGGCTCTCGGT
TCCAATTGATCGACCACGTGGTCACGTACAACAAAATCGCTGCACCCAGA
ATCGTAGAAGATCA

Coding sequence (CDS) from alignment at scaffold_451:1395542..1396355

>TCONS_00066304 ID=TCONS_00066304|Name=TCONS_00066304|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_451:1395542..1396355 (Clytia hemisphaerica)
tcaaatttttgatctCCCAGATTGTAACACGATCATTGAGAATATTTCGT
GTGGTCCTCCAATTATACCACGACTGCCATCTAGATTTTTGAACAATGAT
TTGTAAATGGTGAGTCCTGAAGGCATTTGGAAGATCACCTTGGGGTGGTA
TCCTAGGTATCGTATGCCAATCATAAAGTCGACGTCACCTCCGACGGATG
ATGGAAGCTTTGGTAATGTTGACGGACTCTCTCCACTCCGACGAAATGCA
TCATGGATATCATCTTTGACTTGACCATCGAGAGGGTAATTTGGAAATGT
TGAAGTGATCTTCTTGAGAGCGACACCGGTAAGTGTCACATTTGAGCCGT
CAAAGGTTGGTAGATCGATACTGTAGATGCCCTTGGATGACAGTGTTGAT
ACGTCGCCAACACCACCAAGCTTGATTGGTCCCTTTTCTTGAAGTCTGGC
TCTCGGTTCCAATTGATCGACCACGTGGTCACGTACAACAAAATCGCTGC
ACCCAGAATCGTAGAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041506XLOC_041506Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066304-proteinTCONS_00066304-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066304-exon-scaffold_451-1491911889:1395542..1396355TCONS_00066304-exon-scaffold_451-1491911889:1395542..1396355Clytia hemisphaericaexon
TCONS_00066304-exon-scaffold_451-1510915933:1395542..1396355TCONS_00066304-exon-scaffold_451-1510915933:1395542..1396355Clytia hemisphaericaexon
TCONS_00066304-exon-scaffold_451-1575043694:1395542..1396355TCONS_00066304-exon-scaffold_451-1575043694:1395542..1396355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1395542..1396355 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.06614	1.5172	1.85234	1.02053	0	0.120397	0.158546	0.423726	0.588493	1.26899	0.831755	0.400158	0.514536	0.381679	0.290784	0.652143	0.192986	0.261998	0.704928	0.614713	0.423106	0.18859	0.36052	0.427894	0.146524	0	0.619977	0.524994	1.1419	1.24395
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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