TCONS_00066306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066306
Unique NameTCONS_00066306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066306 ID=TCONS_00066306|Name=TCONS_00066306|organism=Clytia hemisphaerica|type=transcript|length=292bp
cccgcCACATTCAAACAAGTTGTCGATCATTCATCAAATCAATTCGTCGA
TTACATGTCAAGAAATCTTCGAAACGTTCCAAGGATCGACTATCATATTC
TCCACTCAACTGGGAAACGTGtaatcaaaccaaatcaaacgtCAATACGA
ACCACCAACAGGACAGTTAATATGTCCGTCGAAATAATCAATTCAACGAA
AATCGCCATTCAAGAGGTCACCGATGTTATTGAGGAGAATCCCACCTCCA
CGCTGACCGACATAGATGAATCTATTCAACAACTGATGTGGC
Run BLAST on NCBI

transcript from alignment at scaffold_451:1398072..1398363

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066306 ID=TCONS_00066306|Name=TCONS_00066306|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at scaffold_451:1398072..1398363 (Clytia hemisphaerica)
GCCACATCAGTTGTTGAATAGATTCATCTATGTCGGTCAGCGTGGAGGTG
GGATTCTCCTCAATAACATCGGTGACCTCTTGAATGGCGATTTTCGTTGA
ATTGATTATTTCGACGGACATATTAACTGTCCTGTTGGTGGTTCGTATTG
acgtttgatttggtttgattaCACGTTTCCCAGTTGAGTGGAGAATATGA
TAGTCGATCCTTGGAACGTTTCGAAGATTTCTTGACATGTAATCGACGAA
TTGATTTGATGAATGATCGACAACTTGTTTGAATGTGgcggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041507XLOC_041507Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066306-exon-scaffold_451-1491911889:1398072..1398363TCONS_00066306-exon-scaffold_451-1491911889:1398072..1398363Clytia hemisphaericaexon
TCONS_00066306-exon-scaffold_451-1510915933:1398072..1398363TCONS_00066306-exon-scaffold_451-1510915933:1398072..1398363Clytia hemisphaericaexon
TCONS_00066306-exon-scaffold_451-1575043694:1398072..1398363TCONS_00066306-exon-scaffold_451-1575043694:1398072..1398363Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1398072..1398363 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.852077	1.24636	1.92953	0.943872	2.87268	0.908014	1.09548	4.1023	0	0.444697	0	1.84612	0.56669	0.882769	0.241919	0	0	0.327811	0.452888	0	0	0	0.488487	0	1.37226	0.408235	0	0.623456	0.945739	0.481779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top