TCONS_00066314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066314
Unique NameTCONS_00066314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length380

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066314 ID=TCONS_00066314|Name=TCONS_00066314|organism=Clytia hemisphaerica|type=transcript|length=380bp
GCTGAAAAATGGGGGAAAAGACCAAAATTCAATACTGTTAATTACCTTCT
AAACAGTAATTTAGTAATGTCAGATAATTCATAAGACTGCGACACACCAC
ATTTCCCTAAATGACCTCTAGGAAAAAACATATAGCAAGCAGCAGAAGGG
GTTAATATGTACAAGAAAACGTGTCTATTCACGATCAAAAAATTCTTGAT
CAAAAGTGAATGTTTTTGACCAGTTTGGGTCAATCTTTTTCAGATTATCT
TTACTAATAGTAAACGAAGCTTCTCCATTATCCTCCAGGATTGACTCTTT
GATCGATGATATGTAATTCTCCATTGATAAATATCCCGTTGTGAAAGTCT
CATTAGGGACAAAAGAAACGCTACTAGACA
Run BLAST on NCBI

transcript from alignment at scaffold_451:1423878..1424257

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066314 ID=TCONS_00066314|Name=TCONS_00066314|organism=Clytia hemisphaerica|type=transcript|length=380bp|location=Sequence derived from alignment at scaffold_451:1423878..1424257 (Clytia hemisphaerica)
TGTCTAGTAGCGTTTCTTTTGTCCCTAATGAGACTTTCACAACGGGATAT
TTATCAATGGAGAATTACATATCATCGATCAAAGAGTCAATCCTGGAGGA
TAATGGAGAAGCTTCGTTTACTATTAGTAAAGATAATCTGAAAAAGATTG
ACCCAAACTGGTCAAAAACATTCACTTTTGATCAAGAATTTTTTGATCGT
GAATAGACACGTTTTCTTGTACATATTAACCCCTTCTGCTGCTTGCTATA
TGTTTTTTCCTAGAGGTCATTTAGGGAAATGTGGTGTGTCGCAGTCTTAT
GAATTATCTGACATTACTAAATTACTGTTTAGAAGGTAATTAACAGTATT
GAATTTTGGTCTTTTCCCCCATTTTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041514XLOC_041514Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066314-exon-scaffold_451-1491911889:1423878..1424257TCONS_00066314-exon-scaffold_451-1491911889:1423878..1424257Clytia hemisphaericaexon
TCONS_00066314-exon-scaffold_451-1510915933:1423878..1424257TCONS_00066314-exon-scaffold_451-1510915933:1423878..1424257Clytia hemisphaericaexon
TCONS_00066314-exon-scaffold_451-1575043694:1423878..1424257TCONS_00066314-exon-scaffold_451-1575043694:1423878..1424257Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1423878..1424257 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0856602	0	0	0.818092	2.44022	1.84016	4.10939	4.93506	0.837053	1.45746	0	0.386692	0	0	0	0.632794	0	0	1.27318	0	0.598172	1.41952	0.624091	0.577155	1.02498	0.485703	1.51207	0.380796	0	0.374843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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