|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066353 ID=TCONS_00066353|Name=TCONS_00066353|organism=Clytia hemisphaerica|type=transcript|length=1133bp
ACTCTCTAGCCGCTAAAAATCTCCTTCTCACAACACGCACAGAATTTCAA
GACAGCACAAGAACCACTTCACTTGTGGTGACGGTGCAAGGAATTCCTGT
GGAATACGATCAAAACCACGTGACCTCAATAGCCAGCCAATGGGGCACGT
TCACAAAGATTCAACCTATCAAAAAGACGTACAAAACCATCAAGTACAGA
AACGGAAACTGGCAAATCATCTTCTCAGACCTAAGCAAAGCTCTATCCCA
CAAATACACAATAACTCTACCTGGAGATAACCCCACCAAAATTACCCTCG
CGTACAACGATGCAGATATGGGCAGACTTGTACGAAAAGAGGAAGTTAAA
AAACAAACCCCTAAAACCAAAAACACAAACAAACCAAAAGAAACCCAACA
ACCAACacaaaaaccaaaagaaacCCAACAACCAACACAAGAGGAGGTCC
AAAAACCAATCCAACAAGAAAAGTCGGCCGAGGACCTGGTCCTGTCATCT
GATGGAGAAATCCTATCCGACGACGATTCCTCGTCCAATGGCGCTATGGA
AATCGACACCATTGACAACACTAAACCCGACGAAAACTCGGCACTACCAA
AAATTCCATTAAAAGACTATATAATCCAACACTGTCCAAGGGTGCAAGCA
AAGAAAACGACTCCACTTACACAATGTAGTCACAAATCAATCCGTGTTAA
CTTTACAGAATACGTAAAGAAACGCCGCCAATACTACACAAACACCAAAA
CTCCATACTCAATGAGAAACTGGAGACCCACCATGGATGGATACGAGTAC
ATTTTCGGAGATGTCGGCTGGCTATACATGCTCAGTAAATGGGAATGGAT
GACACTCATGAAACTGCTTGATCACAAAAGACTGGATCTCGAAATGGTAG
CCTGTGACTTCGAAGTAGAATACCCAGGCGAGGAAGACGAATATACCACC
TACCTAACTTTTCTAAAACAAGAACTAAACATTCTGGACAAAAACCATCC
AAACCCAGAATTTGAAGAAGTAATAGACGATCTCGATGAACGAATAGAAA
AACTTGTAAGAACTGCCTGCATCCGCCAACACTCCATGAAGGAGACATCC
TTCAAATGGACGCCCAACCGAGAACTTTGGGAA Run BLAST on NCBI protein sequence of TCONS_00066353-protein >TCONS_00066353-protein ID=TCONS_00066353-protein|Name=TCONS_00066353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
SLAAKNLLLTTRTEFQDSTRTTSLVVTVQGIPVEYDQNHVTSIASQWGTF
TKIQPIKKTYKTIKYRNGNWQIIFSDLSKALSHKYTITLPGDNPTKITLA
YNDADMGRLVRKEEVKKQTPKTKNTNKPKETQQPTQKPKETQQPTQEEVQ
KPIQQEKSAEDLVLSSDGEILSDDDSSSNGAMEIDTIDNTKPDENSALPK
IPLKDYIIQHCPRVQAKKTTPLTQCSHKSIRVNFTEYVKKRRQYYTNTKT
PYSMRNWRPTMDGYEYIFGDVGWLYMLSKWEWMTLMKLLDHKRLDLEMVA
CDFEVEYPGEEDEYTTYLTFLKQELNILDKNHPNPEFEEVIDDLDERIEK
LVRTACIRQHSMKETSFKWTPNRELWE Run BLAST on NCBI transcript from alignment at scaffold_452:1..1133 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066353 ID=TCONS_00066353|Name=TCONS_00066353|organism=Clytia hemisphaerica|type=transcript|length=1133bp|location=Sequence derived from alignment at scaffold_452:1..1133 (Clytia hemisphaerica)
TTCCCAAAGTTCTCGGTTGGGCGTCCATTTGAAGGATGTCTCCTTCATGG
AGTGTTGGCGGATGCAGGCAGTTCTTACAAGTTTTTCTATTCGTTCATCG
AGATCGTCTATTACTTCTTCAAATTCTGGGTTTGGATGGTTTTTGTCCAG
AATGTTTAGTTCTTGTTTTAGAAAAGTTAGGTAGGTGGTATATTCGTCTT
CCTCGCCTGGGTATTCTACTTCGAAGTCACAGGCTACCATTTCGAGATCC
AGTCTTTTGTGATCAAGCAGTTTCATGAGTGTCATCCATTCCCATTTACT
GAGCATGTATAGCCAGCCGACATCTCCGAAAATGTACTCGTATCCATCCA
TGGTGGGTCTCCAGTTTCTCATTGAGTATGGAGTTTTGGTGTTTGTGTAG
TATTGGCGGCGTTTCTTTACGTATTCTGTAAAGTTAACACGGATTGATTT
GTGACTACATTGTGTAAGTGGAGTCGTTTTCTTTGCTTGCACCCTTGGAC
AGTGTTGGATTATATAGTCTTTTAATGGAATTTTTGGTAGTGCCGAGTTT
TCGTCGGGTTTAGTGTTGTCAATGGTGTCGATTTCCATAGCGCCATTGGA
CGAGGAATCGTCGTCGGATAGGATTTCTCCATCAGATGACAGGACCAGGT
CCTCGGCCGACTTTTCTTGTTGGATTGGTTTTTGGACCTCCTCTTGTGTT
GGTTGTTGGgtttcttttggtttttgtGTTGGTTGTTGGGTTTCTTTTGG
TTTGTTTGTGTTTTTGGTTTTAGGGGTTTGTTTTTTAACTTCCTCTTTTC
GTACAAGTCTGCCCATATCTGCATCGTTGTACGCGAGGGTAATTTTGGTG
GGGTTATCTCCAGGTAGAGTTATTGTGTATTTGTGGGATAGAGCTTTGCT
TAGGTCTGAGAAGATGATTTGCCAGTTTCCGTTTCTGTACTTGATGGTTT
TGTACGTCTTTTTGATAGGTTGAATCTTTGTGAACGTGCCCCATTGGCTG
GCTATTGAGGTCACGTGGTTTTGATCGTATTCCACAGGAATTCCTTGCAC
CGTCACCACAAGTGAAGTGGTTCTTGTGCTGTCTTGAAATTCTGTGCGTG
TTGTGAGAAGGAGATTTTTAGCGGCTAGAGAGT Coding sequence (CDS) from alignment at scaffold_452:1..1133 >TCONS_00066353 ID=TCONS_00066353|Name=TCONS_00066353|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at scaffold_452:1..1133 (Clytia hemisphaerica)
TTCCCAAAGTTCTCGGTTGGGCGTCCATTTGAAGGATGTCTCCTTCATGG
AGTGTTGGCGGATGCAGGCAGTTCTTACAAGTTTTTCTATTCGTTCATCG
AGATCGTCTATTACTTCTTCAAATTCTGGGTTTGGATGGTTTTTGTCCAG
AATGTTTAGTTCTTGTTTTAGAAAAGTTAGGTAGGTGGTATATTCGTCTT
CCTCGCCTGGGTATTCTACTTCGAAGTCACAGGCTACCATTTCGAGATCC
AGTCTTTTGTGATCAAGCAGTTTCATGAGTGTCATCCATTCCCATTTACT
GAGCATGTATAGCCAGCCGACATCTCCGAAAATGTACTCGTATCCATCCA
TGGTGGGTCTCCAGTTTCTCATTGAGTATGGAGTTTTGGTGTTTGTGTAG
TATTGGCGGCGTTTCTTTACGTATTCTGTAAAGTTAACACGGATTGATTT
GTGACTACATTGTGTAAGTGGAGTCGTTTTCTTTGCTTGCACCCTTGGAC
AGTGTTGGATTATATAGTCTTTTAATGGAATTTTTGGTAGTGCCGAGTTT
TCGTCGGGTTTAGTGTTGTCAATGGTGTCGATTTCCATAGCGCCATTGGA
CGAGGAATCGTCGTCGGATAGGATTTCTCCATCAGATGACAGGACCAGGT
CCTCGGCCGACTTTTCTTGTTGGATTGGTTTTTGGACCTCCTCTTGTGTT
GGTTGTTGGgtttcttttggtttttgtGTTGGTTGTTGGGTTTCTTTTGG
TTTGTTTGTGTTTTTGGTTTTAGGGGTTTGTTTTTTAACTTCCTCTTTTC
GTACAAGTCTGCCCATATCTGCATCGTTGTACGCGAGGGTAATTTTGGTG
GGGTTATCTCCAGGTAGAGTTATTGTGTATTTGTGGGATAGAGCTTTGCT
TAGGTCTGAGAAGATGATTTGCCAGTTTCCGTTTCTGTACTTGATGGTTT
TGTACGTCTTTTTGATAGGTTGAATCTTTGTGAACGTGCCCCATTGGCTG
GCTATTGAGGTCACGTGGTTTTGATCGTATTCCACAGGAATTCCTTGCAC
CGTCACCACAAGTGAAGTGGTTCTTGTGCTGTCTTGAAATTCTGTGCGTG
TTGTGAGAAGGAGATTTTTAGCGGCTAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066353-exon-scaffold_452-1491911889:1..1133 | TCONS_00066353-exon-scaffold_452-1491911889:1..1133 | Clytia hemisphaerica | exon |
| TCONS_00066353-exon-scaffold_452-1510915933:1..1133 | TCONS_00066353-exon-scaffold_452-1510915933:1..1133 | Clytia hemisphaerica | exon |
| TCONS_00066353-exon-scaffold_452-1575043694:1..1133 | TCONS_00066353-exon-scaffold_452-1575043694:1..1133 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_452 | supercontig | scaffold_452:1..1133 . |
Blast
The following BLAST results are available for this feature:
|
