TCONS_00066377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066377
Unique NameTCONS_00066377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066377 ID=TCONS_00066377|Name=TCONS_00066377|organism=Clytia hemisphaerica|type=transcript|length=518bp
tattataCAGACTTTGGTTTACCTCATCCATATCAAGGATTGAATGAAAC
AACCCATCTTCCAACCGATCAGTGACGCGCAGTAGAAGATGGAGTTCATC
CACACAATAATGCTCGATTGGAACGTTTTCCAAGATAGGGTCGTCTTTGC
ATCCACGTTGTTTTGACCATTTAGCGtctatttttctcttcttccCTGTA
AATGTTGGATCTTGTCTGAAATAGAGagGTTGTTCTCACCTCTGTTCCCT
TGTGATGTCACAATAAATACACGAGTTGTCCGAAGTAGCTTGTTTCATGC
CGAGTATCATGAGAAGAAACTGTGGATAAAAAGGAAATGGCTGAGAGTCA
CTCTCTCCATAAACCAATGGTTGGTGATATGTGTCGCCATTTTCGGAATG
CGTGTCAAACATGGCTTATTGAAACGAAACCGTTGTTACTTGGTGGTGAA
GGGAAGCATCTCTTGATAAAAAAACTGAAGTGCAGCGACAAACTCGTTTT
GGAACGATTACAACAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_454:74805..77918-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066377 ID=TCONS_00066377|Name=TCONS_00066377|organism=Clytia hemisphaerica|type=transcript|length=3114bp|location=Sequence derived from alignment at scaffold_454:74805..77918- (Clytia hemisphaerica)
TATTATACAGACTTTGGTTTACCTCATCCATATCAAGGATTGAATGAAAC
AACCCATCTTCCAACCGATCAGTGACGCGCAGTAGAAGATGGAGTTCATC
CACACAATAATGCTCGATTGGAACGTTTTCCAAGATAGGGTCGTCTTTGC
ATCCACGTTGTTTTGACCATTTAGCGTCTATTTTTCTCTTCTTCCCTGTA
AATGTTGGATCTTGTCTGAAATAGAGAGGTACATGATTTTTTTAATTAAA
GCAAACAGCATTATTGTATTGAAAATATTGAGCATTTTTCGTATGTGTAG
ATGGTGTAGAAGCTAGAAAACTCTGAACATGCTTTTATTTATTATGTATT
GTAGCTTTCTACGTTAGAGAACTTTATAAAAATCATTAATTGCATTAATA
TTTAGGTTGTTCTCACCTCTGTTCCCTTGTGATGTCACAATAAATACACG
AGTTGTCCGAAGTAGCTTGTTTCATGCCGAGTATCATGAGAAGAAACTGT
GGATAAAAAGGTAAATAGAATGTTACCGAGGCGATTTTCTTTCTTCAAAA
AACTGCAAAGTGACCTGTTACAATTAAGCACAAATAATAAGATTTTTAAG
TGTTGCCTACCTGGAAAAGAGTACGCGACTTTTTGACCAGACCAGACCTC
TCCACCAATAAACAATTCAACATCCAATTCTTTGCCACCAACCACAATTG
TGGTGTTTTTTGCAATTTCGTTGACTTCAGTGATAAAATCTTGGATTCGG
CACGCGCTAATGCAGCTCTTTCTTAATTGGTTATTGGTTATTGGTTCATT
GAAAATCCTCAAGATATTATGCCCTATGGGAACAGATATCGTAAACACAA
GATAGAGTTACTCATAGTCCCTTTTTTTGAATGAACAAATCACTGGTACT
GAACTGTTGTTTACAGTGGTCTACTTTTACCAAAGATATAGTTGCTCTGT
TTGCCTCATATGAGATATCCTGTGCCTATGGGATTTGAAAAAAATGTTTC
ACGAGTTTATACATGAATGTCTCAAATTCTTTTTTATTCTTTATTATGTC
TTTATATCCAACTCCCTAGGCGATTTGATTTGTTTTTCTCATGAAGCTTC
GTATTTTTTTAAGGTTAACTGTTCGTAACTGCTTTTGCTACCAGCTGACT
TTGTAAGGTGGCCGTGATCACATTTAGATTAAAGCCCGAAGGGCAGGAGT
AGGCAAAAAAACAGAAACCTTAAGAATTGCGCTGCAATCATGACGACGGA
TTAAATCTAGTAGTCTTTTGTTTTTGAAAAGCACATTTTTCGAAATCTGG
CAATATATTCTACTTCTAATCCGGCGTTTTGTATCAAAGCACGTGGAGAG
CGCGTTTGAGATGAGAAAAACGTAGTAAAAATTTCCATCAAAGAGATTGC
ATTCTAATTTAAAGTTCATGCGCGAGCATCATAAAGTCTGTCTCAAAATA
ATTTGCATTTCTACAAGAAGTTGATTTTTTTCTTCTTCATTTTTCATTTT
CATTATTCTTTTTTTTTCAAATATTTTTGCTTGATAATATTCCACTCACA
AATATCTTTTCAATGAGCACAAAATTGCAACTTGATTCGAGTTCTATCAA
AAGTTACAGCCATTTTTTGTTTCAGCTGCAAATTATTTTGAGACAGACTT
TAGTTCGTTTTCTCNTTACAGCCATTTTTTGTCTCAGCTGCAAAATATTT
TGAGACAGACTTTAGTTCGTAAATCACACTTCTATTCATGTGAGAAACAA
GTTAACCATGGCAACCAGTCCACTAAGTCGGACAGTACAAAGTAAATGTG
CCATATTCCCGTGGTGGAAACAGGGATATGTTATAGCGTAGCTGGATGAA
GGACGAGTATTCCTTAGCGGATTGCTTCTTTGTCTTTTCTATTGTAAACT
GTTGATAATAGAAATCCATCTCTGTCCCCTTGAGTGTTCTGTTTTTATAA
GAAAAATGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGAAGCAGACAAAGTATTCATGCAGTACGTTTGCAC
ATATTTTGCTATGATGTTCCCGCTTTTCATCAAAATAATATTTGTAGAAG
ATACCCCAAAAGCTTCTTTGTAAATGAAATCTATTTTTATCAGCGAGTGT
TATGAATTTGAGAAGCTTTCATGATTTCTCTTTAAAAATTTCGGACGTAA
ATATTTTGACAAATATTGTTTCAATTGACTTGAAATTTTTTACATAATCC
GACATACCGACTTGCTATCTGAAAATATCAGTTAGAAAGTGAGGCAATCC
ACGGTGTAGCGCGGTATTTCAAATGAAAAAGTACTATTTATAATCTTAGA
GAAGAAATTTCTTATAACTTTACTAATGAAAACAATGTTTTTCATTTTCT
TTAAATTGTCATTCACCAATGTTTTTAATCATGAACGATAAATGCAGCAG
CAGAATCATTGGCTAAGAGGAAATCCAAATTTCACGAGTTTGTAATTAAA
AAAGTTAAATTTCATATCAAATTTTAATGTCAGGGACAGAGATAGAACAA
GGCTTTTTTAAATGTGCGTTATCCAGCTACGCTATAACATATCCCTGGTG
GAAATAAGAAGCATAAAAAGTTCTGTTTTTTTTCTCTTGAAATTATCTCA
ATACCTTGACTTTCACGATTGTCGCCGCACAAAATTGAGAACTAAATCAA
TTTTATTTCCTTGTAGGAAATGGCTGAGAGTCACTCTCTCCATAAACCAA
TGGTTGGTGATATGTGTCGCCATTTTCGGAATGCGTGTCAAACATGGCTT
ATTGAAACGAAACCGTTGTTACTTGGTGGTGAAGGGAAGCATCTCTTGAT
AAAAAAACTGAAGGTAATCTATTTGAATTTCATCAATAATGGTATGTTAA
AGCTTTCATTTCTTTTGCAAATTATCAACAATCGAAGAGTACGTTTTGTT
ACTAAAGTCAGGCTGAAATCTGAAAGAATCAAGCATACAAACTTATCTTT
AATTCCTTTTTATTAATTATTTTCAGTGCAGCGACAAACTCGTTTTGGAA
CGATTACAACAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041548XLOC_041548Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066377-exon-scaffold_454-1575043694:77691..77918TCONS_00066377-exon-scaffold_454-1575043694:77691..77918Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1575043694:77409..77513TCONS_00066377-exon-scaffold_454-1575043694:77409..77513Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1575043694:75006..75152TCONS_00066377-exon-scaffold_454-1575043694:75006..75152Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1575043694:74805..74842TCONS_00066377-exon-scaffold_454-1575043694:74805..74842Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1510915933:77691..77918TCONS_00066377-exon-scaffold_454-1510915933:77691..77918Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1510915933:77409..77513TCONS_00066377-exon-scaffold_454-1510915933:77409..77513Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1510915933:75006..75152TCONS_00066377-exon-scaffold_454-1510915933:75006..75152Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1510915933:74805..74842TCONS_00066377-exon-scaffold_454-1510915933:74805..74842Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1491911889:77691..77918TCONS_00066377-exon-scaffold_454-1491911889:77691..77918Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1491911889:77409..77513TCONS_00066377-exon-scaffold_454-1491911889:77409..77513Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1491911889:75006..75152TCONS_00066377-exon-scaffold_454-1491911889:75006..75152Clytia hemisphaericaexon
TCONS_00066377-exon-scaffold_454-1491911889:74805..74842TCONS_00066377-exon-scaffold_454-1491911889:74805..74842Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_454supercontigscaffold_454:74805..77918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04711	0.61834	0.320366	0	1.65388	0.801052	0.858766	1.27635	0.41098	0.785839	1.30383	1.55704	0.956864	1.61515	0.493613	0.581471	2.34711	2.15438	1.37571	1.29823	1.06796	1.53561	0.734278	1.22537	30.305	27.6409	0.685075	0.168018	0.275098	0.292666
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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