TCONS_00066384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066384
Unique NameTCONS_00066384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066384 ID=TCONS_00066384|Name=TCONS_00066384|organism=Clytia hemisphaerica|type=transcript|length=827bp
CGTATGCAggtcatttttcagctttcctTTTCTGGAAATGACACAAAAAC
TCTGTTGAGCCTGTCTTGTcattgaaacaataaaaatttccatcttcttt
cttctgttCTTTCTCTTTGCTACAGTTTCAGCTTCTTCTTTCAACCAACA
TCTTACAcctcttcaactttttcaaaacattcaacgtttcatttttattt
ctcacaaaaaagtaaacattcgaaattggAAAGATTCGAAGGTTCGAAAG
TGTCAGTTTTCACTGATCGAGtcaatgcagcgacttcttAAAAGGGAGCA
CCATGAAAGCAGAGAGAGAGTTTGAGTTCTTTGAACGCTTCAACCGCACG
CTGGTTTTCCGAACCAATCAGCTTTCTGATATTTGAACGCTTCGACCGCG
CTCTGGTTTTCCGAACCAATCAGCTTTCTGATATGGAGCGGGAGTAAANN
NNNNNNNNNNTGTCCGAGAAtaaaatcggggaaaaaaatgtttgaaggtg
ggccaaagggtgggccaagggtaggccatatggcccgggccagagaggtg
ggccaggttttTTACCTACCCAGTAAAGAAGCTAAAAATGTACGGGAACG
ACGGAATATCTTTTATGGAAGTTGCCCTGACTCGGAAATTTTCGGCACCG
TAGAGTGGTTCTTTTTCTCGACGAAGCCATCCTAAATACAATCTACCAAA
CCGATATTGTAACGCCTCCTACCTGGACGAAAACAACCGGGATCTGAATA
CTTAATCCACATTTAACATATGAGAACTAAATTTTCGTTTTCGTCTTGCG
CTCCCCtgggtatatagaatttaaagg
Run BLAST on NCBI

transcript from alignment at scaffold_454:54254..55080

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066384 ID=TCONS_00066384|Name=TCONS_00066384|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at scaffold_454:54254..55080 (Clytia hemisphaerica)
cctttaaattctatatacccaGGGGAGCGCAAGACGAAAACGAAAATTTA
GTTCTCATATGTTAAATGTGGATTAAGTATTCAGATCCCGGTTGTTTTCG
TCCAGGTAGGAGGCGTTACAATATCGGTTTGGTAGATTGTATTTAGGATG
GCTTCGTCGAGAAAAAGAACCACTCTACGGTGCCGAAAATTTCCGAGTCA
GGGCAACTTCCATAAAAGATATTCCGTCGTTCCCGTACATTTTTAGCTTC
TTTACTGGGTAGGTAAaaaacctggcccacctctctggcccgggccatat
ggcctacccttggcccaccctttggcccaccttcaaacatttttttcccc
gattttaTTCTCGGACANNNNNNNNNNNNTTTACTCCCGCTCCATATCAG
AAAGCTGATTGGTTCGGAAAACCAGAGCGCGGTCGAAGCGTTCAAATATC
AGAAAGCTGATTGGTTCGGAAAACCAGCGTGCGGTTGAAGCGTTCAAAGA
ACTCAAACTCTCTCTCTGCTTTCATGGTGCTCCCTTTTaagaagtcgctg
cattgaCTCGATCAGTGAAAACTGACACTTTCGAACCTTCGAATCTTTcc
aatttcgaatgtttacttttttgtgagaaataaaaatgaaacgttgaatg
ttttgaaaaagttgaagaggTGTAAGATGTTGGTTGAAAGAAGAAGCTGA
AACTGTAGCAAAGAGAAAGaacagaagaaagaagatggaaatttttattg
tttcaatgACAAGACAGGCTCAACAGAGTTTTTGTGTCATTTCCAGAAAa
ggaaagctgaaaaatgaccTGCATACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041552XLOC_041552Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066384-exon-scaffold_454-1491911889:54254..55080TCONS_00066384-exon-scaffold_454-1491911889:54254..55080Clytia hemisphaericaexon
TCONS_00066384-exon-scaffold_454-1510915933:54254..55080TCONS_00066384-exon-scaffold_454-1510915933:54254..55080Clytia hemisphaericaexon
TCONS_00066384-exon-scaffold_454-1575043694:54254..55080TCONS_00066384-exon-scaffold_454-1575043694:54254..55080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_454supercontigscaffold_454:54254..55080 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.500572	0.845544	0.547298	1.32984	3.10605	1.85411	0.92054	1.95645	0.887438	1.50554	1.22265	1.60539	1.65974	1.8334	0.703804	0.588165	0.626952	0.709156	0.768469	1.32544	0.648627	0.802632	0.0884182	0.708054	0.887645	1.31223	0.464322	0.506736	0.724555	0.481115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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