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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066444 ID=TCONS_00066444|Name=TCONS_00066444|organism=Clytia hemisphaerica|type=transcript|length=964bpRun BLAST on NCBI protein sequence of TCONS_00066444-protein >TCONS_00066444-protein ID=TCONS_00066444-protein|Name=TCONS_00066444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp MSRGDFGAGGGYQQSYGGGGYGQSERNGDTEYMRIANNASSNIQQLTRKIRun BLAST on NCBI transcript from alignment at scaffold_455:552751..573992+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066444 ID=TCONS_00066444|Name=TCONS_00066444|organism=Clytia hemisphaerica|type=transcript|length=21242bp|location=Sequence derived from alignment at scaffold_455:552751..573992+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_455:552751..573992+ >TCONS_00066444 ID=TCONS_00066444|Name=TCONS_00066444|organism=Clytia hemisphaerica|type=CDS|length=8100bp|location=Sequence derived from alignment at scaffold_455:552751..573992+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066444 vs. Swiss-Prot (Human)
Match: STX7 (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4) HSP 1 Score: 187.193 bits (474), Expect = 1.375e-56 Identity = 111/229 (48.47%), Postives = 158/229 (69.00%), Query Frame = 1
Query: 256 IANNASSNIQQLTRKIALIQKLVNQIGTPQDVPENFERLQSEQKDSNLLVKETSSLLQKLGNFQTNDPGEMRQRKIQQDKLHENFSNALNNFQKVQRLAADKERESLQRARAQSVEFRGGNDSFGDDNSRMYD-------NQPQLQRQTEAELSLDEIR---EREAAIRQLESDIVDVNEIFKDLAIMVHEQGETIDSIEANVDTAVSHVEAGNVHLHKARDYQKKSRR 912
+A SSNIQ++T+ IQ+ +NQ+GTPQD PE ++LQ +Q+ +N L KET +++ G+ T P E RQRKIQ+D+L F+ +L NFQKVQR AA++E+E + R RA S + SF +D+S+ + QPQ+Q Q E E++ D++R ERE++IRQLE+DI+D+NEIFKDL +M+HEQG+ IDSIEANV+ A HV+ N L +A DYQ+KSR+
Sbjct: 14 LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTT-PSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASS----RVSGSFPEDSSKERNLVSWESQTQPQVQVQDE-EITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSRAADYQRKSRK 236 The following BLAST results are available for this feature:
BLAST of TCONS_00066444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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