TCONS_00066447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066447
Unique NameTCONS_00066447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066447 ID=TCONS_00066447|Name=TCONS_00066447|organism=Clytia hemisphaerica|type=transcript|length=816bp
GTTTTCCTTTTAATACAAAATAGCTTATAAAATttagaattaattttttc
tgggaAAAGGTAACTTAAAAAATAACGATATAAAAATGTCTCGTGGTGAT
TTTGGTGCTGGTGGTGGCTATCAACAGAGCTATGGTGGCGGTGGATATGG
ACAGAGTGAAAGAAATGGGGATACTGAATACATGAGAATTGCCAACAATG
CAAGCAGTAACATCCAACAACTCACCAGAAAAAttGCATTAATACAAAAA
TTGGTCAACCAAATAGGGACACCTCAAGATGTCCCTGAAAATTTCGAACG
ATTGCAAAGTGAACAGAAAGATTCAAACCTTTTGGTCAAAGAAACTTCAA
GTCTTCTACAAAAATTGGGGAACTTTCAAACAAATGACCCTGGAGAAATG
CGACAAAGGAAGATACAACAAGATAAACTacatgaaaatttttcaaatgc
acTAAACAACTTCCAAAAAGTTCAACGGCTGGCAGCAGACAAAGAAAGGG
AATCACTACAACGAGCAAGAGCGCAATCTGTTGAATTCAGGGGTGGAAAT
GACAGTTTTGGTGATGACAATTCTCGAATGTATGACAACCAACCACAATT
GCAAAGACAAACAGAAGCTGAACTTAGCCTGGATGAAATCAGGGAACGCG
AAGCTGCTATCCGACAATTAGAGTCTGATATTGTTGATGTAAATgagatt
ttcaaagatttgGCCATCATGGTTCACGAACAAGGAGAAACTATCGATAG
CATCGAAGCGAACGTCGATACCGCTGTATCACACGTCGAAGCTGGCAACG
TACATTTACACAAAGC
Run BLAST on NCBI

transcript from alignment at scaffold_455:552819..568536+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066447 ID=TCONS_00066447|Name=TCONS_00066447|organism=Clytia hemisphaerica|type=transcript|length=15718bp|location=Sequence derived from alignment at scaffold_455:552819..568536+ (Clytia hemisphaerica)
GTTTTCCTTTTAATACAAAATAGCTTATAAAATttagaattaattttttc
tgggaAAAGGTAACTTAAAAAATAACGATATAAAAATGTCTCGTGGTGAT
TTTGGTGCTGGTGGTGGCTATCAACAGAGCTATGGTGGCGGTGGATATGG
ACAGAGTAAGTCAAGATTGCTTCCCTTAAAAAACATAGGGTTATTGTTAT
TGGAAATTTATCATCCTGTTTTTTTATACTCTCGCTTTGATAATAAGTGT
TTCTTTTGGATACAAGGATNCCTGTTTTTTTATACTCTCGCTTTGATAAT
AAGTGTTTCTTTTAGATACAAGGATAACTTGCTCACATCCAAATTCTTCA
ATtcaaattctatttttaaaaagcAGTATTAATGAATTTTTAGGTGAAAG
AAATGGGGATACTGAATACATGAGAATTGCCAACAATGCAAGCAGTAACA
TCCAACAACTCACCAGAAAAAGTTAGTAGATATATTCATCATTTGACTTT
AATCttcgattttcattttttttgacgTTGTAGGATTATCACTCATATAT
CTGTTGTTTACCGGTtatcgtttttttttctatttagttGCATTAATACA
AAAATTGGTCAACCAAATAGGGACACCTCAAGATGTCCCTGAAAATTTCG
AACGATTGTAAGTCCCTTTGAGTTTTACTGTTATCAAAAAGCAAGCTGGa
tttgcttgaaattgaaaagagcTTTTGGAAGTGGAGACTTTCCTATTTTC
CTACTTTTTCCTTTGTACAGTAAGTTTTTGCGGCAGAAAATCAGTGTATT
TATTCTTTCCCAATCACCATACAACCAACGTACACTAATTTTGTATCATT
TCANCATGTGTTTATTCTTTCCCAATCACCATACAACGTACACTAATTTT
GTATCATTTCAATAGTAAGTAAATGATAAAGTAAAGGCCACTATTTTCTC
TTAGATTAAGAGTTTGTTTTAGCACTATTAACGtatatttaatttttgtg
aattttcaaaataatctgaCATATTCTTACAGGCAAAGTGAACAGAAAGA
TTCAAACCTTTTGGTCAAAGAAACTTCAAGTCTTCTACAAAAATTGGGGA
ACTTTCAAACAAATGACCCTGGAGAAATGGTAACTGTTTATTAGTTTGAA
ATAGCAAATTTTTGCAGTTGACTTTGAATCTTGATTGTCCAAATGGTACA
AGTACCTTCAACTTTattcaaattaaatttaattcGATTTACTTTCTATT
CCTTCTTTTAGCGACAAAGGAAGATACAACAAGATAAACTacatgaaaat
ttttcaaatgcacTAAACAACTTCCAAAAAGTTCAACGGGTAAGTTCCGA
CCATGGAGCAGCTTTTTTCTGGCTTAAGTCTTTTGTGTCATATTCCATGG
TTTTTATGAACTCTCTGCCTGATCCACACTTGTAATTTTTCATCCCCCCT
AACTTGTTCctaagattttgaaatttttatttccagCTATTAAAAGAGAA
CTCCTGAATTCGCCCCTAGGTAGCCTGGCCTGATTTGCTCTTTGGTTTCC
TTATTACGGTTTTTAGAAGTCTGGTCTCAAGCCCCAACTTTTGTGAATTG
AAATTAGAATATTTTTACCAAATCATCAATAAAAAACCCAACCTTCAACA
CTTTTTCTTCACTCTCTTTAGCTGGCAGCAGACAAAGAAAGGGAATCACT
ACAACGAGCAAGAGCGCAATCTGTTGAATTCAGGGGTGGAAATGACAGTT
TTGGTGTAAGTTTTGTATGTGGTGGTTGCTAACACGTTCAATGCCGACCC
TTTttagaaatcgatgaaaattggaCCTCTCGTAATTTAATCGAAAATCT
GATATTCAGCGGCTTCTGTGGCTTCAATTTTGCTTCAAGTGCCTGTTCAC
ATTGAATACCAATCGACGCATTATTTTACGTAGATTTcgaaaatgtaata
aaaaagcAAGCAAAAGTTTCTTTATTAAACGTTATGCACTATGAAGTAGC
ACCGGTATTTTGACTCTTCTACTACGAGTAAACGCGTAGTCGATTCTGGT
TCTACTGGATTGATCAAACGTGTCTATGTTGAAAAGGGCCTTTATTATGA
TGATATTTCGAGTTCATAAAAGACAAGTAACAGATATGTAAAtgaacttt
tttaatttctattaatatattatttcatttttaaagtaTTGGTAAAATTA
TTGCGTTTTCAGGATGACAATTCTCGAATGTATGACAACCAACCACAATT
GCAAAGACAAACAGAAGCTGAACTTAGCCTGGATGAAATCAGGGAACGCG
AAGCTGCTATCCGACAATTAGAGGTTTGTAAAATGAGTGTGTTTAAAATA
TGATCTTTAAATGTCattgattttaataaaaaaattgaatgggCAGAGGT
TTaaatacaatcattggatttctaaaccttttttaaaagaaaattgaaac
aagtTACCCCAAATTAAGGGTAACTTTCGGACgtgaattttatacacgat
tagcattccctatatcaaaacatatcagagggatGTGTACAGCCTATGAC
AAGGATCATTTTAATCTCCAATACAAACCTGGGAACATCCGTTAAGAAGA
CTTTCCGGAAAGTCCGTCATTCTGTATACCTATCTTCCTTTTCTTTTAGT
CTGATATTGTTGATGTAAATgagattttcaaagatttgGCCATCATGGTT
CACGAACAAGGAGAAACTATCGGTATGATTTCTATTTCAATAATTTAAGA
CGAACAGACACAGACACCCTTAAATAATTCGATAAACTTTGTTGATAAGC
ATAAGTTCCAAAAATTGCCACGTTTATCATCGTCTGGCCATTCCTGAATA
TTTTACTAAATTATATCATGAACTCAATTTCACATAACGATCTGacgttt
tttttactttatttttttgacaCCAACAGATAGCATCGAAGCGAACGTCG
ATACCGCTGTATCACACGTCGAAGCTGGCAACGTACATTTACACAAAGCT
CGTGACTACCAGAAGAAATCACGAAGGAAAATGTGTATTCTTATTCTCAT
CCTTttgattgttgttgttgtacttggtcttattatttatttttctgtcA
AGTAATTTATTATTTCTAGAGCTGCACCTTCCTGTCCCTGTGTATGAATC
TTAGATCATTTTTAGTCTCGTTTAGTGGATCGTGGAACGAAAGGAAAATC
GAGCTTCGCTCTTACAATTTTTTGTGCAAAGTTACAGCGAAGCTCTTTAA
ATCTGTTTCTTGTCTCACTATATAATTATTATATAATTAACAATATCGTA
AAAAGTTAGATCAATGAATGTTTGTTATTAATCTAATTTTTCAATGGTCT
TCATAatatattctttattttattccGAAGTAAAAACTTTTCGCATATAC
ACCATTCCAATCTTAATATTCAGGCTAATAAAGCTTACTATGGGTTAACA
TAACTTATTCTACCTTGGTAAGTCAAAACACTAATTACAGGTATTAACAT
AATAGTTTAGTATCACTGTAAATTATTCTAACAATCATTATATGGTCTAC
GGAGTCTTTGGAAGGTTTCTTTGATGATCTATTGTTAGTTTGATTAAATA
AAACAAGTTTTAATCAATTTCGTACTCAAAGTCTCGTGTTATCCTGGATG
GCAATCTGCAGCGAAATCATAAAGCTAGCTCTAATATCATTAACATCGAG
CACTCTTATTGGTTCTCGCTTGAACAAAGCATAATAACTAATTTTTGTGA
CGCCATTTTACTGCATAAGTCTCTGGTAAAGTTGGCTTTTGTGATCTTTA
GTAGCTTTCTTTTCtagtgtttttgtttttgttcaagTTTTTTTATTCTA
GCCTATGCTGATTATAATGATTGCTCCTGATTCATCTTTATATAATATAG
CTAGGtatattattttaaattttttcatttactaAGTCAATGATGAACTG
GAACTGGCCAGCCAGTACcaagaatatatatttttggcTCTACTAATCCT
AAGAAAATCTTAGGGGTTTATTAACATTTCGATGATTGACATTGCCCTGT
TTTAAAATTTGGCCCTGACCTTTTACCTCTGGGTGAACAAAAACAGTTTa
aacaatttattattttttaaaggaaTATTGTAAATTATCGGCTaactttt
gtaatgaataaaaaaagtaaatttcaaaaaagtttcttatacgTAAAGAT
GGTTGATGCACGTGGTAAGTTCATTAGAATACTTCTTGTAGATTTGTTGG
TAAACGAAGTATAGAATATACACATATCAACCAAGACtggtaatgaaaat
aaaatttctcgGCTGCcggcatttttttttttttttttattcatagaatt
atatttcacaggtctatcgacctctacgaaataattttagatttataaaa
tattgtctaattcttcatctgtcNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNttcgccttttggcacatatctttaataatttt
tctttcgttgatggtgaagtcatctgtaatgctaaagccaccaatttcat
tgaatcttttcagcttatgcagattttgcattgtccgttctttttcctct
atactttttaagatcaacttgattggacgccaatgtatagcccttttctg
ttttgtccaatgcggtgatggtgggacggtttgatatcttggacgccaat
gttacctagtataccttcaatatctattttgtcttgttcctgttgttcct
cTTTGTTATCTACCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAGCGTTCGAAAAACT
TAACTGAATCGAGGTTACACTTGTGTTTGCTACAATAGGCGAAAAGAACT
TTCCTTGTATTTTCGTTACTATTCTCCTTAAAAAATAACCCCACTGCTGA
GGGCTGATAGGTGTATTAAATGAGTTTCATGAGTAATTATTCATTGTATT
TTATGACAGTTAGAGTTACTTGATTTTTCTGGCCACTTCTGGTTGAGCCT
GTTCCCCGTGCAGACTTGTTGAATATTGGAAATTCTTTCTTCGATAATTG
TCAAGCGTTACTGTATGTGTTggtattttcttgttttagcTTATTAATTT
ATACCAAAAATTGCAAACTAACATTGCAATAAACATTATCAAAAGATGGA
ACAGCATAAACTGGTGTTACATGCGTTGTTTGCCCTGGCAATAATGCTTA
TATTGAGATAACTCCAAAGTAACATCACATTAATTATGTAAGTACATCTA
TTTGTGTCCTTGTATAGAAAACTGGTATGATCAAGATACAATGTGTTTTC
ATGGATAATATGATTGAATGTGATCTGTCGTCAAATTTAAAAGATACGTT
TGAGGCAGCTAGGCAACTCTAATGCTAACAACagcatatttttgtttttc
gtaGAAATTCCTCTAAACACTCATGATATGACGCAACGAAGAGAAAATAT
GAAATGCATGTATCTTGCCAAATTGAATTGATTGCTAAGTGAAATGAGTT
TTTACATATTATTGTTgtcttgaaaatatttcttcgaTCATGTTTTTGTT
ATATCTCATATCGATCACATTCACTTCATATCGTTCACATTAACTTGCTC
ACAAAATTGGTTTGGTCGATATTATACGTGGATAGACAGTTTTGACTCGG
CTACCTATATAAACTGAGCAGGACATTCGAACTGAGAGCCTCTCAGACCA
GCTTTTGGATTGAATTTTTAAGCCTccgtttttaggcttttgtacTTAAC
ATACTGTACGATCTGCCAAGGATTTTCAGTTAAATTGTAGAAGGTGTATT
TTCAAACTTACTCAACTTAGATCAATCTTCTTTCCGATATAGCTTTTTTT
ATCTATAATCCAGGTgacacaaacaaacaaacactgAAGGCTCCTACTCT
CTCACAAAAGACCACTGAATCAcaccgccaggaggaaggaaccaGTAATA
TTTCAATAGAAGTTATAGACGAACCATTTGTGGTGGTATGCTGTCATCTA
CTTTACGCTTACGCTTACTCTTCGCTGGTACTGAGTCCTCCCCCGAAGTT
TCTTCGAACAGAGATTGTTGTCCTAATATTTGTAAGTAGTTTGTTTTCAT
CAATAGAAACTTGGACTCTCTAAGAGTAAGCTTACCCTGACGACCGTTGG
CGATCAAAAGTAATTTGCAGAATTCTCTTcctttaataatttttgatcGT
GATGATATTGGATTTGTCAGTCAAAAATTTGATCGCCACTGCAAATTTGG
AGCAGTTTTCTGTTTTTCAATCTGAAAGGTTTAAAAAAATAGTCTCTAGA
AAGTATTTATTTTATGTATAATAACCTTTGGGAATTCTGAGTAACGCGTT
AAAAGacaaagatttttaagaatGGAATAGGATAATACTTTTTTACTAAA
AATTTACAATCTATACACTCCTTGTGTTCGTATGGATTAGCTGTCTTTGT
GTCATCGGATGATAAgactattcatgatatacaccattgcaatgtcttcc
acggacccaacagctgattggttgaaagggACTTATTGATtcattttacg
tcactttcaaccaatcagctgttggatccgtggaagacattgcaatggtg
catatcatgaattctacATTTTAATAGTAAAAGATGAGGAACAAGTGCAA
AGACATTTTCCAGAACAAAAAAAATCTACAGTAAGTATTCCTTCCAAAAT
CATTCTTGGACCTACCGTGGAGGTCCtgtaaattaacccatgtccgttcg
ttcgcctgtctgttaccagcttttctcaggattggttATCATAAGtttct
tctgatttttgcacaatgatacaaaatggcaatatcCGAAACGTGATGGA
AcatgattttcgagaaaaaggGCAATTTTCTTTAGGCCAAATTTGGGACG
AAACCTGGCTAAAAAAGGGGTTTTTGGGAGTCTTCGTGAAATTGATACAT
CAATATTTCCTTTTTGCGTAAATACAAAGGGAAAGGTTCTCTAAAGAGTG
GCTGAAGCCGTTCAGTTTGCATTTTCTTTCTAATTtgctcttttttcttt
attcatatTATATTCAGTATATTagccttcaggtaggtccattcagcatg
tagcttgttaatattattattattttattacagATTTTCTTTGTCAACGT
CgtcgaaaaatgttgattttaatTGCAGGAATATTCTCATGGAGCGTTAC
TGTCagactttttccattttttcaggAGCAGACtcctcttttacaaaaac
aaacgaCAAAAGCTAAACGTAACCTTGATAAGCTCAGAGAACGCGAGGCT
GCCATGCATAAATTAGAGGTTAGTGAGATTGATACCGTTGGTGTTAAAAA
GGGGTTGTTGTACGTTGGTGTACTTAGGATAATGGTAAATCAGTGCTTTG
ACACGTCCAAATTATCTATCTAGCGGTAGAGTTAGGGTCGAAACTGTTAA
AGTCCTCCGTCACTGAGGTGAATTCCTTAACAAATAAACTTTTCCATGAA
TGCGCGCGTGCGAAATCTCAAATGCCGTACACACAGAGAGATGACGCTGT
TATAATTTCTGTACCAGTCTCTTTGCACcgcaatgttttttttgtttgtt
ttttcagaATGATATTGTTGACCTTAATGAGATGTTCAAAGATTTGGTCC
TTTTGTATAATTCTAATGAAGATATTATCGGTATGATTTTATCTTCCGGT
CAATTTTTATGCTAATGACTAAATCAAATAAACGTCTTTTGAATAAATAT
GTGAGAAATCTTATATTTATGATAGTTCGTAAGCACCCATTTATACACTC
CCGTGTCACCCACTGAAAGATCTATCCAAAACTTTGTTTCTGGTGGAAAG
TTGACTTAATCCCAATTTGAAATTCGCTTAAAAAAAACTGCACTCCGAAT
CCCCATAGGGATTTCCATTGAAATTTTCACCGCCGatgtaaaaaaatgtt
tcacGGGCCTGCGAGACAGGGATGTGTCTATGCTGTATTGcttattttaa
aaagttattttgtagAAAACTGTTTGACTTAAAATAGCAAAATGAGTTTT
AACTTTTAAAGCTAtaccttttccaaaaaaaaataattttattttcgtAA
AACTGACAGACAGCATCGAAGCGGACGTCAATCCTGCTGTATCACACGTC
GAAGCCGCCAACGTAAATTGGGACAAAGCTCGTTACTACCAGAAGAAAGC
ACGAAGGCGAAAGTGTATACTTATTCTCATCCCTTTGATTATTGTTGTTT
TACTTGGTTTTTTCATCTATTTCTCGATCGGTTAGGACGACCCTAAGGTG
GGTGAATATTgtcatttaattatttttcgaGTTTTATTGTAGATTTTTGC
GGCCGTTTTTgtaaatcaacttttttttaaatgaaaaactgaATTTTATT
TATATGTacatattttctttcaagtcAACCTGTAAAGAATAAACTTTCTT
CAAAACCTGATTTGGTTGTTTGCCAGCTGCAAAACTCTTTGATTGTTTAG
AGAGAAAAAATTCCAGCCTCATTAACCGTTAAGTGAATTTGGTCAACAAA
AACAGGtctagtttttgacttttctgtTTCAGTACCAATTGACGGAGTAT
TATACAACGAAGAAGACAGTATAATGCCAGAGGGTTTCCCTTGTATTTTG
AGACTGCTTTTAGAAAAAAGCAAGCGAATCATTGCCAACACTCAATATGA
TAAGAGAAATTGGTTTATCTAGTCACTTCTACTTGAGCCTGTACCGCTTG
CAGACTTGTTGAAtattggaaaaactttttgataaacattACTGTATAAT
AGTGTTCgtattttcttgttttagcTTATTAATTTATACTAAGAACTGAA
TACTatcattaaaatgaaaatttatcaaaagatgaaatacaataaaaact
tttcatCTTTTCTGGTGATGCAGATATTGTTTGCTCTGGTAATAATGCTT
GTGTTGAGGTAACTTCAAGGTCTAACATTTACATTATATAAGTACGTATA
TTTTAGGCCTTATAGAGAATTGGCAATCATAAGCAAATTTCACTCGAACT
TAACAAGCACGAGATGGAATGTAATCTGTCATTAAAGTTCAAAGTTTGAG
GCAGCTAGGCAACTCTATAATGCTAACAACAGCACATTTATTGTTTTTCA
TAGAAATTCCTCTAACCACTCATGATGACGCAACGaagagaaaaaatgaa
tttgtatCTTGCCAAATTGATAagtaaaatgagtttttttctaGTAATAC
ATATCGTTGTTgtcttgaaaatatttcttctttctATGTGTCATATCTCA
TATCGTTCTATACGTTGATCTAGACTGTCTCGACCTGGCTATCTATATAA
ACTGAGCAAGACAGGGGAAGGAGACAAGGATTTGAACTGAGAGCCTCTTG
GTGGTTGCACTGACATCTCACACTAGCTCTATGATTAGATTTAAAGCCTC
CCTTTTTATAGCTTTTGGATTTGAACACATACTGTATGATACGCCAAGGA
TTTCTAGCCAAATCGTAGGAGTGTATTTTTAAACTCACTCAATTAGAACT
CATCTTCTTTTTAATATTTCATTAGAAGTTATAGACGATGTGGCATGCTG
TCATCCACTTTACGCTACAAGCTTTTCACTGGTACTGGATCATGCCCTGA
AGCTCCTTCGAACAGAGATGGCTGTCCTAAAGTCTGTAAGTATTTTACTA
TCAACAATGAATACTTAGACCCTATAAGAAGTTACTCATTCTGACTTAGC
CTGGATACGTGGTGATTAAAATCAATCTGCTGATAACCCTccccttttta
taaatttgagGGATTTTATTGCCATGGCAAAGagcatttttctgtttttc
aatCTGAAAGGATTAAAAGTCTCGAGAAAGTATTTATTTTACGATTAATA
ACCTTTGGGAATAATGCGTCaaaagacaaaagattttttataaaagaatg
gAATAGGATGACACTTCTTGTACGTATCACCTAGCTGTCTTCGCGTCATC
AGATAAAAAGGAAATAGATTCCCAAAACCAGACCCTGTCTAAACTTTAAG
TGGAATCTTCACTTATGAGCCATCAAATATAAAAATTCTAGAGAAATCac
caaaaaattcaattttttttaataattaggCACTATTCTACATTTCAATA
GTAAAAGAAGAGGATGCTACAAATGACGCTACAGTAAGTTTCTTTCATCA
TCATTTTTCTTATGACAGTGGAAACTCgaacctttataactcgaatgcat
ccttaactcgaacaagtttctCGTCCTTTGAGTTGACAACCTTATTATTA
TTAACCTTGCTCCATAGCGAtaaatctccataactcgaatgaaTTTGTGT
TTCTGTgggtgttcgagttatgaagactttGTATCAAGATTTCCTGATGT
CGTTGGGATGTTTGCATGGAGTGTTACTGTTAGACTTTTTCCATCTTTTC
AGGAGCAGACTcctcttttacaaaatcaaacGACAAAAGCTAAACATAAC
CTTGATGAGCTCAGAGAACGCGAGGCTGCCATGCGTAAATTAGAGGTTAG
TGTTTATATAAGTGTCAAGTGTATTTTAAGTGAGCCGTTTAGATTGATAT
CGTTGGTGTTAAAAAAGGGTTCCATCCCCAGCAATAAGATTTTCACTTCG
TACACAGCCACCCAAGGTGTACCTAGGATAATAGTAACATTTATCTAGCG
TTAGAGTTTGAAGCAAAACTGTAAAGTCCTCTGTCACTGAGGTGGTGGAG
CTTACCTCCCTATTTCCAAATTTACCTTGCCTcccaaattatttcatttt
gaggGACCTTGCGTAAGCGATAGGACCGTCTAGCGCTGTTGGAAAATACA
AGGGTTACACCAAAAAAATTAGCACTGGacaaaataagagatttccaatc
ctggaagtatcttgaaaatatgatattttcatatacatttgtaaatatcg
aaatatgacttttctatatttccaaagaTGAGCcaatatcatatttcatg
atGCTTTCAAATCtgatattcattgaaacatcatatataccgggtgcacc
aaaataaagtatacaggtttgtcgagatattgcgAGCTTCAGCATTTAAG
TTTTTTGttcgttctttttttattgtatagaggatgctctaacttgaatt
ttgagctatcatacattaagtttgaaaacgtagttcaaaagttatttcca
aaaaactgactttttttccatgtcgaaatttcaaaaaatcattaaaaaca
gcaatcacgcgataaataagacaaaatgacaaaaacacaatttcattgtt
ttttttattcctttttctcttatcttaaattttgccaacagtttgtCCAT
CTCATTTGCACGttatgaacatttccaacaccagcaaactaaatgcagac
ccaagttctttgagcaactagtcgatgaatggtgatctatttttttcaaa
aatttctcacatagcacacacatagcatcaaaacctctcttggagatttc
caaaaaaatctttcagcctttccaaaaatattttatcccacgtgggaata
gcttgttttaccatattatTAAATTCCATAACGATTTTTGATGAACACAA
Ttgcattttttgatattttcatgtgtaaagaaggtaagtgtcaagagaaa
agtttgctcgctgtttttaatgattttttgaaattttgatttggaaaaaa
agtcagttttttggaaacaACTTTCGAaccactttttcaaatttaatgta
tgatagctcaaaattcaagttaaagcatcctctatacaataaaaaaataa
taaagaaaaaatttaaatcctgaagctcacaatatctcgacaaagctgta
tacttttttttggtgcacccggtatttcCATggacatataaacgactgga
cgtctatcttcttttcagtctttgaagcgagcttcgttgtcGCCTCTATT
TTAAATTTGGAGTAAAAAATCCGACTTTATTCCGtcacaattttatttct
ttgaattacttatctaaaatgattgatagagcttgaacattactcgtaat
tcacaaaaaaattattttcaaattttttcataaatttgcaatatatttta
aaagcatttttcaacGCTAAagtgcagaatttcaactgcgtgtatacttt
tgaatctctTTTATCGCTGGAATAAATCTTTCTATGGCTTAAAAAAATGG
CATGTTAAAGTTCAGAGCCGATGTTATAAGAATATCCTTATGTGAATCTC
ATACTCTCTAAAATCATTCCATACTTTcgagtcaaaatttcaaaatatta
gccGGAGTTTTAACAAGTTGACGGAGTATTTTGCCTCTCTTACCTTTCTC
ATAATGTAAATAAAAGAGATGTAAAGAGTTGGACCATTGAGGTTAGCAAA
GTATTCCCCTGAGGTAtaccatcaaaatcattttatgattttaacgaggc
ggtaacgaagctagcagtgttatcttcaaaaatataaaggagatagatgt
ccagtcgtttatatgttcatgatatttccaaaatttggaaatatttttga
tattcagatttcaaaatatcatgaaatatgatatttcctaaaatttaaaa
atatagaGAAAAGTCGTATTTCTATATTTACAAatgtatatggaaatatc
atatttgcccccgcaggagcgtagcgacgaggaggcactcatagtttcac
gcacagatattggactggaatctcgaaattttgttgcgtttgttttgtcg
cccaagcatccccgtagttagtctcttccgtaaatgttcggtttttttNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAtgccatcatatggtcgtaactcgagaaagtccttcttaactta
gtaaaacaagataccggcaaagtacaaaaaagttgaatgtatgcatatgt
aaagttgaatcaaaaagtggttgaatgaatgctGTGAATGTCAatcgatg
taaacaaactttttcttttggtcttcaaaatagatttacctcacttgcac
tacatgcgcacattcaactttttcatgcagttgtgatagcctaaataact
tacgctccagtggtttggtgaaatagctccaattctggctttccaagtta
ggattgaccttcccgaaggcatttaacacTGGTTAGattaggtacacaga
cagtcatacagaaacaccataaagtgaaagtatatatagctataaaccca
aaaagtctagcttcctgaaggcacgtcttttcattgtctgcgctgcttgg
agaaaagattgcatcatgaaaaagtactatacacttgaaaaaaaatttag
acgcatttcaacttttcttgactgtacgtctgaatggaccacaatggcat
tcctttatttttcttttgaccaataaaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNATTATCAAGttgcgaattcttcaagtatt
ttgttaatggaatataattttttttcaagcaaatgcctcaatcaatcaac
caatcaatcaataaataaataaatcaattattcctggctatattttaatg
ttttaatctttaaagcattaaaaagatttataagtgcatgacatgatctt
tatgtgggggcatttagtgaaagctatgactagtttcaagatatttccag
gattggaaatcctcttatttcgcccagtgagaAGAACTGTATCTTCGATG
CCGATTTGAAACCcttaacaataaaatttttaaattagccgtagatatgg
GTCTGCGTACACACAGAGAGAGATAACACTGTTATAATTTCTGTACCAGT
CTCTTCGCACCGCaatgtttgatttattttttcagaatGAAATTGTTGAC
GTGAATGAGATGTTCAGAGATTTGGCTATCTGGTTGTATATTGACCAAGC
AAATAATATCGGTATGATTTTATCTTCCGGTCAATTTTCATGATAATGAT
TAAATCAAATAAACGTCTTTTACATAAATATGTGAGAAATCTAATATTTA
TGATAGTTCATAAGCACCCATTTATACACTCCCGTGTcacccacagatat
ctgtaaagcccgaagggctagataggcaactttaagctttctccagcaaa
aaaaagtgaagcaaaaatttgactttttaaatttcgttccgatggatagg
atctagcattttaattgttttcagagCGCGAGACCAAAAAAAGTAGGcga
caaacgctatttcacatctctcaaaccggtgaaattgcatattttagtca
cgtgactttggtaggaaatccttccaaacctaggcttcacttttcgataa
aagccgcaaatctagcccttcgggctttacagatctgtggtgtCACCGAC
TGAAAGATCTATCCAAATTTTTGTCTCTGGTGAAAAGTTGACTGTGATTT
CatccaaatttgaaattcacTGGGAAAAAACTGCACTATCCGaatcccca
ttggaatttcgatTGAACTTTTTACCACCGATACAGAAAAATGTTTAACG
GACCTgcgagacagggatgtatttATGCTATATTTTGCTTATTTTATAAA
GTTAATTTGTAGAAAACTGTTTGACTTAGAATATAGCAAAATGAGTTTTa
aagcttttccaaaaaaatatttttttaattttcgtaaAACCATAACAGAC
AGCATCGAAGCGGACGTCGATCCCGCTGTATCACACGTCGAAGCCGGCAA
CGTACATTTACACAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041568XLOC_041568Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066447-exon-scaffold_455-1491911889:552819..552973TCONS_00066447-exon-scaffold_455-1491911889:552819..552973Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:552819..552973TCONS_00066447-exon-scaffold_455-1510915933:552819..552973Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:552819..552973TCONS_00066447-exon-scaffold_455-1575043694:552819..552973Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:553212..553289TCONS_00066447-exon-scaffold_455-1491911889:553212..553289Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:553212..553289TCONS_00066447-exon-scaffold_455-1510915933:553212..553289Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:553212..553289TCONS_00066447-exon-scaffold_455-1575043694:553212..553289Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:553406..553475TCONS_00066447-exon-scaffold_455-1491911889:553406..553475Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:553406..553475TCONS_00066447-exon-scaffold_455-1510915933:553406..553475Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:553406..553475TCONS_00066447-exon-scaffold_455-1575043694:553406..553475Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:553851..553947TCONS_00066447-exon-scaffold_455-1491911889:553851..553947Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:553851..553947TCONS_00066447-exon-scaffold_455-1510915933:553851..553947Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:553851..553947TCONS_00066447-exon-scaffold_455-1575043694:553851..553947Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:554080..554157TCONS_00066447-exon-scaffold_455-1491911889:554080..554157Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:554080..554157TCONS_00066447-exon-scaffold_455-1510915933:554080..554157Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:554080..554157TCONS_00066447-exon-scaffold_455-1575043694:554080..554157Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:554490..554573TCONS_00066447-exon-scaffold_455-1491911889:554490..554573Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:554490..554573TCONS_00066447-exon-scaffold_455-1510915933:554490..554573Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:554490..554573TCONS_00066447-exon-scaffold_455-1575043694:554490..554573Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:555031..555141TCONS_00066447-exon-scaffold_455-1491911889:555031..555141Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:555031..555141TCONS_00066447-exon-scaffold_455-1510915933:555031..555141Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:555031..555141TCONS_00066447-exon-scaffold_455-1575043694:555031..555141Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:555468..555540TCONS_00066447-exon-scaffold_455-1491911889:555468..555540Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:555468..555540TCONS_00066447-exon-scaffold_455-1510915933:555468..555540Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:555468..555540TCONS_00066447-exon-scaffold_455-1575043694:555468..555540Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:555748..555804TCONS_00066447-exon-scaffold_455-1491911889:555748..555804Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:555748..555804TCONS_00066447-exon-scaffold_455-1510915933:555748..555804Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:555748..555804TCONS_00066447-exon-scaffold_455-1575043694:555748..555804Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1491911889:568524..568536TCONS_00066447-exon-scaffold_455-1491911889:568524..568536Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1510915933:568524..568536TCONS_00066447-exon-scaffold_455-1510915933:568524..568536Clytia hemisphaericaexon
TCONS_00066447-exon-scaffold_455-1575043694:568524..568536TCONS_00066447-exon-scaffold_455-1575043694:568524..568536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:552819..568536 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.5005	26.8781	63.9355	68.6543	32.7948	27.8443	39.7829	42.4494	31.2238	37.9372	33.1336	21.4071	34.3942	18.0639	23.6585	24.492	17.7253	21.6533	4.92189	26.0925	1.15732	0	16.824	8.49342	42.3571	37.1135	19.9607	3.98317	0.00022511	0.149622
Blast
[Close]
BLAST of TCONS_00066447 vs. Swiss-Prot (Human)
Match: STX7 (Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4)

HSP 1 Score: 172.555 bits (436), Expect = 1.356e-51
Identity = 104/219 (47.49%), Postives = 149/219 (68.04%), Query Frame = 2 
Query:  188 IANNASSNIQQLTRKIALIQKLVNQIGTPQDVPENFERLQSEQKDSNLLVKETSSLLQKLGNFQTNDPGEMRQRKIQQDKLHENFSNALNNFQKVQRLAADKERESLQRARAQSVEFRGGNDSFGDDNSRMYD-------NQPQLQRQTEAELSLDEIR---EREAAIRQLESDIVDVNEIFKDLAIMVHEQGETIDSIEANVDTAVSHVEAGNVHLHK 814
            +A   SSNIQ++T+    IQ+ +NQ+GTPQD PE  ++LQ +Q+ +N L KET   +++ G+  T  P E RQRKIQ+D+L   F+ +L NFQKVQR AA++E+E + R RA S      + SF +D+S+  +        QPQ+Q Q E E++ D++R   ERE++IRQLE+DI+D+NEIFKDL +M+HEQG+ IDSIEANV+ A  HV+  N  L +
Sbjct:   14 LAQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGSLPTT-PSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASS----RVSGSFPEDSSKERNLVSWESQTQPQVQVQDE-EITEDDLRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVENAEVHVQQANQQLSR 226
The following BLAST results are available for this feature:
BLAST of TCONS_00066447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX71.356e-5147.49Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4[more]
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