TCONS_00066462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066462
Unique NameTCONS_00066462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066462 ID=TCONS_00066462|Name=TCONS_00066462|organism=Clytia hemisphaerica|type=transcript|length=417bp
aaaaacaaattaaacaCAAAGAGGTCATGTCACTTCAAAACTTGTACCGC
CTGGTATGATGTTCATTTTTGGCCGCGTGATGAAACGATTGAGGAGAACG
AGTGTATTTGGCAGGTTAGAAGAGTACATCATCTATACGAGATACATGAA
AATGATTCTGGAGGATATTGTCCACAATcagaaatttgtaaacaaaaaga
tattaCACGAAGAAGGTGTAAATGTAACAACATTATTGTATACGAGACGG
ACTGGTCACCATGGGAACAAGTTCCACTCACAAAAGATGGCGGCCAGTGT
CAGATGCAACGTCAAACAAATCCTATCACAGAAAAacgattttattttca
aagtcaAGAATGTCCTTTCAATGAGGAAATGGACGATGTTAACAGAATAC
CTAGGATTGAATTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00066462-protein

>TCONS_00066462-protein ID=TCONS_00066462-protein|Name=TCONS_00066462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
KNKLNTKRSCHFKTCTAWYDVHFWPRDETIEENECIWQVRRVHHLYEIHE
NDSGGYCPQSEICKQKDITRRRCKCNNIIVYETDWSPWEQVPLTKDGGQC
QMQRQTNPITEKRFYFQSQECPFNEEMDDVNRIPRIEFK
Run BLAST on NCBI

transcript from alignment at scaffold_455:447482..448569-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066462 ID=TCONS_00066462|Name=TCONS_00066462|organism=Clytia hemisphaerica|type=transcript|length=1088bp|location=Sequence derived from alignment at scaffold_455:447482..448569- (Clytia hemisphaerica)
AAAAACAAATTAAACACAAAGAGGTCATGTCACTTCAAAACTTGTACCGC
CTGGTATGATGTTCATTTTTGGCCGCGTGATGAAACGATTGAGGAGAACG
AGTGTATTTGGCAGGTTAGAAGAGTACATCATCTATACGAGATACATGAA
AATGATTCTGGAGGATATTGTCCACAATCAGAAATTTGTAAACAAAAAGA
TATTACACGAAGAAGGTGTAAGTATAACCAATACACCCCTGTCTCAGTGA
GCCGAAGATTTCTTTACCAAATGGGTTAGAATAAAGGAGTTTATTGCCAA
TGAAATGGTTTTCTATTAGCCTCTATGATAAGATTCGTGCATATGTTACA
TGCTGTTTTGTACTCTATTTAAGGGGAAAATGCACAAATCTCGGCAGATT
TTCCCTTCGAAAAAGACGCTGGAAAAATTTATTTTTTCTCATTAATCAAT
TAACAATTGACGAATCCTATGAAATATGCTTATGTAGGAGATTTCAAACT
GCCTTAGTGAAAATAAGAGACAGGTGTATCTTCCAATGGATTCTAATAGA
AATTTAAAGCCCATTTAAAGTCATCGGATATCATTTCTAATGGTTGTCCA
TCAACCTGCCTGGCACCCAGGCATTTAATTCCATTCTTTCCTAATCTCCA
TAAAATCTAATTCTCTTGCTGAATGGGCTATTTCCCTGATTTTTTGAGAA
GACTTATTGTTTTTTGCAAAGCTTTCGACCAAAAGTGACCTTTACTCGGC
CTGAAATTCAAAAATCCTCCTAGTATTTTCTAAATCTTCTGAAAATTTGT
ATTTTTTGACCTAAATGTTCCAAAATAGCACCCTACTTTCAAATGGATGG
GTTAATTAGAAATAAGACGAATATTTTTCTGTGTTTAGGTAAATGTAACA
ACATTATTGTATACGAGACGGACTGGTCACCATGGGAACAAGTTCCACTC
ACAAAAGATGGCGGCCAGTGTCAGATGCAACGTCAAACAAATCCTATCAC
AGAAAAACGATTTTATTTTCAAAGTCAAGAATGTCCTTTCAATGAGGAAA
TGGACGATGTTAACAGAATACCTAGGATTGAATTTAAA

Coding sequence (CDS) from alignment at scaffold_455:447482..448569-

>TCONS_00066462 ID=TCONS_00066462|Name=TCONS_00066462|organism=Clytia hemisphaerica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_455:447482..448569- (Clytia hemisphaerica)
GTAAATGTAACAACATTATTGTATACGAGACGGACTGGTCACCATGGGAA
CAAGTTCCACTCACAAAAGATGGCGGCCAGTGTCAGATGCAACGTCAAAC
AAATCCTATCACAGAAAAACGATTTTATTTTCAAAGTCAAGAATGTCCTT
TCAATGAGGAAATGGACGATGTTAACAGAATACCTAGGATTGAATTTAAA
AAAAACAAATTAAACACAAAGAGGTCATGTCACTTCAAAACTTGTACCGC
CTGGTATGATGTTCATTTTTGGCCGCGTGATGAAACGATTGAGGAGAACG
AGTGTATTTGGCAGGTTAGAAGAGTACATCATCTATACGAGATACATGAA
AATGATTCTGGAGGATATTGTCCACAATCAGAAATTTGTAAACAAAAAGA
TATTACACGAAGAAGGTGTAAATGTAACAACATTATTGTATACGAGACGG
ACTGGTCACCATGGGAACAAGTTCCACTCACAAAAGATGGCGGCCAGTGT
CAGATGCAACGTCAAACAAATCCTATCACAGAAAAACGATTTTATTTTCA
AAGTCAAGAATGTCCTTTCAATGAGGAAATGGACGATGTTAACAGAATAC
CTAGGATTGAATTTAAAAAAAACAAATTAAACACAAAGAGGTCATGTCAC
TTCAAAACTTGTACCGCCTGGTATGATGTTCATTTTTGGCCGCGTGATGA
AACGATTGAGGAGAACGAGTGTATTTGGCAGGTTAGAAGAGTACATCATC
TATACGAGATACATGAAAATGATTCTGGAGGATATTGTCCACAATCAGAA
ATTTGTAAACAAAAAGATATTACACGAAGAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041578XLOC_041578Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066462-proteinTCONS_00066462-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066462-exon-scaffold_455-1575043694:448353..448569TCONS_00066462-exon-scaffold_455-1575043694:448353..448569Clytia hemisphaericaexon
TCONS_00066462-exon-scaffold_455-1575043694:447482..447681TCONS_00066462-exon-scaffold_455-1575043694:447482..447681Clytia hemisphaericaexon
TCONS_00066462-exon-scaffold_455-1510915933:448353..448569TCONS_00066462-exon-scaffold_455-1510915933:448353..448569Clytia hemisphaericaexon
TCONS_00066462-exon-scaffold_455-1510915933:447482..447681TCONS_00066462-exon-scaffold_455-1510915933:447482..447681Clytia hemisphaericaexon
TCONS_00066462-exon-scaffold_455-1491911889:448353..448569TCONS_00066462-exon-scaffold_455-1491911889:448353..448569Clytia hemisphaericaexon
TCONS_00066462-exon-scaffold_455-1491911889:447482..447681TCONS_00066462-exon-scaffold_455-1491911889:447482..447681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:447482..448569 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170566	0.166329	0	0	0	0	0.438579	0.205296	0	0.178036	0	0	0.453753	0.117807	0	0.311814	0.128043	0.262481	0	0.948668	1.3193	0.241316	1.56454	1.2446	1.2819	0.326877	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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