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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066494 ID=TCONS_00066494|Name=TCONS_00066494|organism=Clytia hemisphaerica|type=transcript|length=3584bp
CATTGTTAAGCtgtaatttaattgaatcaACCATCATTATATTACAATCT
GACAGTTTGAGATTTCTAAATGCTAATCAGTAAccattattgattttttt
gttatttcaatATGAGCTTACAAAAACAAAAGGCATTTAGTTACTCAGAT
CTTTTAATTGATGTCAACTTGTTACTATATtatagaagaagaaaaaaatt
gaataaaaatatattgaaaaaattgtcacaTTGAACAACATTTTACATCA
ATTCTGGCAAGATATCAATAACTTCAAGCTGTTTGGTGGTATTAATTTCA
ACTCAACCCCTATTGCTATTGGTCCACAAAAAcacatcaaataaaaataa
taaaaaatatctaATAAAAATGGAACAAGACTCAAAGACCAATTTTTTAT
GCAAGATGGGATGTGGTTTTTTCGGAAACTCTTCTTTTGATGGTATGTGT
AGTAAATGTTATAAAGACCATCTTAAACGTCAACAACAACCATCACCATC
AGCTGGCCGCACTAGCCCTGGAACTGCAGGATCTATCGGTAGCATTATTG
CCAATAGTCTACCTACACCATCACCCAGCCTCCCAACCGAGGTCTCTACA
GCTACAACAACTGTTGCCCAGGCAACCCCACCAATCAATATTCCATCATC
AAGCACTGGTCTAAGAACACCAGAAAAAGGCCTCGCCTCAGCTTATGTCG
AAGAAGATACCTCACCGAACCCAGAATCACCTTTGGGTGAGAGCCTCGAT
TCAGCATCCCCTGGTAAATTAAAGAAACGAAATCGATGCTACTCTTGTCG
CAAGAAGGTCGGACTTACCGGTTTCGAATGTCGATGCGGTGGACTTTACT
GCGGAATTCATCGATACTCAGATAAACATAATTGTACTTTCGATTACAAA
GCTGATGCTCGCGAACAACTTACTAAAGCCAATCCAGTCGTCGTTGgaga
gaaaatcaaaaagatttagaaaatatCAGATTGTCGTTTGCCGTAAATGT
TGATACAATGTGCCATAAAAAATAGTAGGAAACAAAATGtgtataaaaaa
tctttacgagaggaaaatatatataaaaactttagcaaaaaaatgtgtaa
attcCACGAACTAGATTATCACTATCCTACTATTATTTTTACGTGCATAA
TAACTTGATTGACCAATGGCGTTTGGAGGAATAAGGAAGGAGGAGAAACG
CCTTGTTGTTGTCTTGTCGAGGCTGCGTCAGCGAGATAGCAGTCTCATAG
AATAACCGAATTGACataaaaaaatatcttcaaagattttctttgaaaga
taGGACGCTAGATCTTAGGTATGGTAGCTCATACCTAAAAGACGTATTCG
AAgtttgttttaaagaaaaaatggttGATTTATTATTGGAGAGGATCGTT
TTAATCATAAAAGAAGATCCATTATAGTAGTCGGTATTTTtattacaatt
tctttttaaaaatttgtgttttctGTTTGTTGTGATTGATTGATATGATA
TAACTGGAGAATGGTAGAGACTCTTCccaaaagaatgttttgatcTGTTG
ATGGCTCGTACGATATTGTCTTGGTTCCCAAATCTTATAACTTTTAGTTT
ATATTATTTTGAACCTTTTTTTTTAcgaatttcttttgttgtttttttca
tccTTATCGAATCGTGGGACTTAGCTTGGCTTTTTGTCTTCGAGGGCATT
TGACTTTTAGGGGCGTTGTATTAAATGATTTATTCGTGTAATAGAGGTAG
TATTTGGTGTTGAACCTTTTCCTAATTGTTTGTTACAATCATTGAGAACC
TTCAATCATTTTGAGCAATAATTTAACCAACCATACCctttcaactttca
aattctctataAACCATACTTGACTTGTTTGTACCCAAAGCCTCGGAACC
TTTTTAGCCCCCTTCCCATCCATTGAGCACCAAAACTTATCATCAAAGCT
ACAATATTCTAGTTCCCAGTGTCCATTGTACCTAGTACCCTCCTTGCCCT
ACCTTGTAAAAAATTGAGGCCATTTCCTGAAAGAGCTATATATTTTGATC
AATTATGATTAATTCACCCCCAACCGGTATCCTTTTTTCCATTGAGCATC
ACCGTTTTATGAGAGATGCTTCTTATTGActtgttattatttttcattac
aATTATATTATANGAAAATATCAGATTGTCGTTTGCCGTAAATGTTGATA
CAATGTGCCATAAAAAATAGTAGGAAACAAAATGtgtataaaaaatcttt
acgagaggaaaatatatataaaaactttagcaaaaaaatgtgtaaattcC
ACGAACTAGATTATCACTATCCTACTATTATTTTTACGTGCATAATAACT
TGATTGACCAATGGCGTTTGGAGGAATAAGGAAGGAGGAGAAACGCCTTG
TTGTTGTCTTGTCGAGGCTGCGTCAGCGAGATAGCAGTCTCATAGAATAA
CCGAATTGACataaaaaaatatcttcaaagattttctttgaaagataGGA
CGCTAGATCTTAGGTATGGTAGCTCATACCTAAAAGACGTATTCGAAgtt
tgttttaaagaaaaaatggttGATTTATTATTGGAGAGGATCGTTTTAAT
CATAAAAGAAGATCCATTATAGTAGTCGGTATTTTtattacaatttcttt
ttaaaaatttgtgttttctGTTTGTTGTGATTGATTGATATGATATAACT
GGAGAATGGTAGAGACTCTTCccaaaagaatgttttgatcTGTTGATGGC
TCGTACGATATTGTCTTGGTTCCCAAATCTTATAACTTTTAGTTTATATT
ATTTTGAACCTTTTTTTTTAcgaatttcttttgttgtttttttcatccTT
ATCGAATCGTGGGACTTAGCTTGGCTTTTTGTCTTCGAGGGCATTTGACT
TTTAGGGGCGTTGTATTAAATGATTTATTCGTGTAATTGAGGTAGTATTT
GGTGTTGAACCTTTTCCTAATTGTTTGTTACAATCATTGAGAACCTTCAA
TCATTTTGAGCGATAATTTAACCAACCATACCctttcaactttcaaattc
tctaacTTGACTTGTTTGTACTCAAAGCCTCGGAACCTTTTTAGCCCCCT
CCCCATACAATGAGCACCAAAACTTATCATCAAAGCTACAATATTCTAGT
TCCCAGTGTCCATTGTACCTAGTACCCTCCTTGCCCTACCTTGTAAAAAT
TTGAGGCCATTTCCTGAAAGAGCTACGTATATATAAAGTTTGAccttttt
gaatatattttgatcaaaatatgATTGATTCACCCTCAACCGGTATCCTT
TTTTCCATTGAGCATCACCGTTTTATGAGAGATGCTTCTTATTGActtgt
tattatttttcattacaATTATATTATACCAGAAAAACAATATGCCATCT
TATTATATGTCAAGAGAGAAAGTTTGTAAGAAAGTATATATTTTGTCAGC
AATTCCTTTATGTTATGTTATATTCCTTTACCTTACCTACCCCTCTATCT
TTCCAATAACTGGGACCTATCCatgtatacgtttttttataaggaacctt
aacttagCTCCGAGCCTGGAGTTTCTTATTTTTC Run BLAST on NCBI transcript from alignment at scaffold_456:306435..312362+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066494 ID=TCONS_00066494|Name=TCONS_00066494|organism=Clytia hemisphaerica|type=transcript|length=5928bp|location=Sequence derived from alignment at scaffold_456:306435..312362+ (Clytia hemisphaerica)
CATTGTTAAGCtgtaatttaattgaatcaACCATCATTATATTACAATCT
GACAGTTTGAGATTTCTAAATGCTAATCAGTAAccattattgattttttt
gttatttcaatATGAGCTTACAAAAACAAAAGGCATTTAGTTACTCAGAT
CTTTTAATTGATGTCAACTTGTTACTATATtatagaagaagaaaaaaatt
gaataaaaatatattgaaaaaattgtcacaTTGAACAACATTTTACATCA
ATTCTGGCAAGATATCAATAACTTCAAGCTGTTTGGTGGTATTAATTTCA
ACTCAACCCCTATTGCTATTGGTCCACAAAAAcacatcaaataaaaataa
taaaaaatatctaATAAAAATGGAACAAGACTCAAAGACCAATTTTTTAT
GCAAGATGGGATGTGGTTTTTTCGGAAACTCTTCTTTTGATGGTATGTGT
AGTAAATGTTATAAAGACCATCTTAAACGTCAACAACAACCATCACCATC
AGCTGGCCGCACTAGCCCTGGAACTGCAGGTTAGTAAAATTTTAGCTTTT
AGTTCATTTTATTCGTATGTTATTTTTTAGCTTTGCTTCATATTAAANAA
CTGCAGGTTAGTAAAATTTTAGCTTTTAGTTCATTTTATTCGTATGTTAT
TTTTCAGCTTTGCTTCATATTAAAGAGTTGACCTTTGAAAATCACATTGT
CTTAATTTTGCTAAGGAACTCTTTTAGttgaacttttgcaaaaatttaCT
CTCGAGTTTGACAATGATTCATTTTAAGTCATCTTTAGTATACAGATAAC
TTATTACATATCACCTATTCTGAGagcatttttttcaataaaattttata
agattCAATATTTGAGAGAACTGTCCTCCCAAAGTGAAGTGTTACAGTTG
TTTTGAATGTCATAGTTTTGTATTTTCGTCACTTCTTTTCGTAaggattt
gttttgttttggcttGTTTAAgtaaattaatgattttttgtgTTGTTAAG
ATGGGACatttttctaatcaatagaATGTGATTAGACACGATTGAAACAG
TTATTGAATTCTATTCCTACAGTGTGACAGACTTTTAACTGATTTTTATG
ATTGTTATTTTGTATTGAAATATTTCTGTTCACagcgatttttttctttc
tctcttgCTTACCAGTCACAACATCAATCCACAGCTCAAAAGCCTGAATT
TCTTTTAGTTAAAAACAGGAGGTTATATGAATTTTTTCTCTCATCCCACA
TCACACAAAATGATTTTCATAATTTATCCTACTATCCTCTTTTTCGTCGT
TGATTATGTATACATATTTGAATGAGAAAAGGTTCTGAATAATAGATTAT
AAAGCTTAAATATGGGCTAATATCAGAATCGATCGAATCATAGCTTGCTT
TCATAATcttaaaaaagaatttattttctaTATCGTTGTATTGTTCTCCA
TGGCATTTCTACTTAatattttaaaatctatttAGATACATGAAaagtta
ttttattaatttttgattaatatttttacatcaaTAGGATCTATCGGTAG
CATTATTGCCAATAGTCTACCTACACCATCACCCAGCCTCCCAACCGAGG
TCTCTACAGCTACAACAACTGTTGCCCAGGCAACCCCACCAATCAATATT
CCATCATCAAGCACTGGTCTAAGAACACCAGAAAAAGGCCTCGCCTCAGC
TTATGTCGAAGAAGATACCTCACCGAACCCAGAATCACCTTTGGGTGAGA
GCCTCGATTCAGCATCCCCTGGTAAATTAAAGAAACGAAATCGATGCTAC
TCTTGTCGCAAGAAGGTCGGACTTACCGGTAAGTGACATTTTACTTCGTT
TGATTGGTACTTATTTTACATGAACCTTCATGTTTATCATAATGGTCAGT
TATAAGAAAAAAGTAGTGACAAGTAATATAATGAAAAGTCTTAAAAGATG
GTTAACGCACTTGAAACTTTGATTGAGCCCTTCGTAACGTCCTGGTGTTT
TAGGAAGGGTTCCGTTaaaagatgacgtcattgataatcatgaatttatt
gtgtaaaCAAGGATATCCatgatttaataaaattcatagtttttatgtat
ttttttaacttttacacGCAGATTGTTTCACATACAAACAACATCTCTTG
TACATTTGAACAAGTGCAGAAGCACGAAACTTTAAGTTATgtacttttat
tgaaagaaaactttaaaattttagtttttatgtaTTAATGAAAGCTTTAA
ACCGTTGAGCCATTTCACTAGATAAAGAATTTGGACACATATTATCATTT
AGACTAGTTAATCATGCGTACACAAGACACAATAGGAATTAATGATAGCA
TAGCGCAAATAGCCCTCTCTGATTGAAACAGTTATCTTTGCTTGCTGGCG
TGTCAATGTTTACGCTCAATaatgttacacgtttttttttttataagaac
gtcaaaaattttcgaagccttcggatgttcttagttttttggatttgaag
cctaaaaatgttcttaaaatgttcttNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgagcattttgatgtaatt
tcttaagaaattgcatgtttttaagtctccaaagccttagtatgttctta
gaatgttcttaaatttttgggcctcgaagccttatgttcttatatagttt
gttcttataaaaaaaaaacgtgtatcgacTCTACTATTGAAGATATGATT
TATCCAGCTCTGTTATTTGACGATGAAAATCTTGATAAAGcttgtttgtt
tttcaaaattctatatTTTGGAAACCAAATCAGCCTTTGCTTGTCAATTG
TATATATGAATTTAAATCAATGTTTTGAGTCATGACTTTGTTGATCGATG
AAAATCTTTATCTCTATATGAACTAAGAATAAATAGCGACCTCGAAATAC
GGCGATATATCGTTTAAGACCGCAAGCAAACCATGTTTTTAGATAAAGAA
ACTTGTATATGCATGTTATCTGTCATACAAACAGAAAATTTGTTTGGCAT
AGACTTCCCACTTTTTAATCTggtattttcactttttagaGCTCATATCA
ACAGTGATTTGAGTGCTTTGTTACCTTAGCAACGAACTAATTCATGTTTA
TGCTTTCGTCATAGGTTTCGAATGTCGATGCGGTGGACTTTACTGCGGAA
TTCATCGATACTCAGATAAACATAATTGTACTTTCGATTACAAAGCTGAT
GCTCGCGAACAACTTACTAAAGCCAATCCAGTCGTCGTTGgagagaaaat
caaaaagatttagaaaatatCAGATTGTCGTTTGCCGTAAATGTTGATAC
AATGTGCCATAAAAAATAGTAGGAAACAAAATGtgtataaaaaatcttta
cgagaggaaaatatatataaaaactttagcaaaaaaatgtgtaaattcCA
CGAACTAGATTATCACTATCCTACTATTATTTTTACGTGCATAATAACTT
GATTGACCAATGGCGTTTGGAGGAATAAGGAAGGAGGAGAAACGCCTTGT
TGTTGTCTTGTCGAGGCTGCGTCAGCGAGATAGCAGTCTCATAGAATAAC
CGAATTGACataaaaaaatatcttcaaagattttctttgaaagataGGAC
GCTAGATCTTAGGTATGGTAGCTCATACCTAAAAGACGTATTCGAAgttt
gttttaaagaaaaaatggttGATTTATTATTGGAGAGGATCGTTTTAATC
ATAAAAGAAGATCCATTATAGTAGTCGGTATTTTtattacaatttctttt
taaaaatttgtgttttctGTTTGTTGTGATTGATTGATATGATATAACTG
GAGAATGGTAGAGACTCTTCccaaaagaatgttttgatcTGTTGATGGCT
CGTACGATATTGTCTTGGTTCCCAAATCTTATAACTTTTAGTTTATATTA
TTTTGAACCTTTTTTTTTAcgaatttcttttgttgtttttttcatccTTA
TCGAATCGTGGGACTTAGCTTGGCTTTTTGTCTTCGAGGGCATTTGACTT
TTAGGGGCGTTGTATTAAATGATTTATTCGTGTAATAGAGGTAGTATTTG
GTGTTGAACCTTTTCCTAATTGTTTGTTACAATCATTGAGAACCTTCAAT
CATTTTGAGCAATAATTTAACCAACCATACCctttcaactttcaaattct
ctataAACCATACTTGACTTGTTTGTACCCAAAGCCTCGGAACCTTTTTA
GCCCCCTTCCCATCCATTGAGCACCAAAACTTATCATCAAAGCTACAATA
TTCTAGTTCCCAGTGTCCATTGTACCTAGTACCCTCCTTGCCCTACCTTG
TAAAAAATTGAGGCCATTTCCTGAAAGAGCTATATATTTTGATCAATTAT
GATTAATTCACCCCCAACCGGTATCCTTTTTTCCATTGAGCATCACCGTT
TTATGAGAGATGCTTCTTATTGActtgttattatttttcattacaATTAT
ATTATANGAAAATATCAGATTGTCGTTTGCCGTAAATGTTGATACAATGT
GCCATAAAAAATAGTAGGAAACAAAATGtgtataaaaaatctttacgaga
ggaaaatatatataaaaactttagcaaaaaaatgtgtaaattcCACGAAC
TAGATTATCACTATCCTACTATTATTTTTACGTGCATAATAACTTGATTG
ACCAATGGCGTTTGGAGGAATAAGGAAGGAGGAGAAACGCCTTGTTGTTG
TCTTGTCGAGGCTGCGTCAGCGAGATAGCAGTCTCATAGAATAACCGAAT
TGACataaaaaaatatcttcaaagattttctttgaaagataGGACGCTAG
ATCTTAGGTATGGTAGCTCATACCTAAAAGACGTATTCGAAgtttgtttt
aaagaaaaaatggttGATTTATTATTGGAGAGGATCGTTTTAATCATAAA
AGAAGATCCATTATAGTAGTCGGTATTTTtattacaatttctttttaaaa
atttgtgttttctGTTTGTTGTGATTGATTGATATGATATAACTGGAGAA
TGGTAGAGACTCTTCccaaaagaatgttttgatcTGTTGATGGCTCGTAC
GATATTGTCTTGGTTCCCAAATCTTATAACTTTTAGTTTATATTATTTTG
AACCTTTTTTTTTAcgaatttcttttgttgtttttttcatccTTATCGAA
TCGTGGGACTTAGCTTGGCTTTTTGTCTTCGAGGGCATTTGACTTTTAGG
GGCGTTGTATTAAATGATTTATTCGTGTAATTGAGGTAGTATTTGGTGTT
GAACCTTTTCCTAATTGTTTGTTACAATCATTGAGAACCTTCAATCATTT
TGAGCGATAATTTAACCAACCATACCctttcaactttcaaattctctaac
TTGACTTGTTTGTACTCAAAGCCTCGGAACCTTTTTAGCCCCCTCCCCAT
ACAATGAGCACCAAAACTTATCATCAAAGCTACAATATTCTAGTTCCCAG
TGTCCATTGTACCTAGTACCCTCCTTGCCCTACCTTGTAAAAATTTGAGG
CCATTTCCTGAAAGAGCTACGTATATATAAAGTTTGAcctttttgaatat
attttgatcaaaatatgATTGATTCACCCTCAACCGGTATCCTTTTTTCC
ATTGAGCATCACCGTTTTATGAGAGATGCTTCTTATTGActtgttattat
ttttcattacaATTATATTATACCAGAAAAACAATATGCCATCTTATTAT
ATGTCAAGAGAGAAAGTTTGTAAGAAAGTATATATTTTGTCAGCAATTCC
TTTATGTTATGTTATATTCCTTTACCTTACCTACCCCTCTATCTTTCCAA
TAACTGGGACCTATCCatgtatacgtttttttataaggaaccttaactta
gCTCCGAGCCTGGAGTTTCTTATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066494-exon-scaffold_456-1491911889:306435..306963 | TCONS_00066494-exon-scaffold_456-1491911889:306435..306963 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1510915933:306435..306963 | TCONS_00066494-exon-scaffold_456-1510915933:306435..306963 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1575043694:306435..306963 | TCONS_00066494-exon-scaffold_456-1575043694:306435..306963 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1491911889:307972..308262 | TCONS_00066494-exon-scaffold_456-1491911889:307972..308262 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1510915933:307972..308262 | TCONS_00066494-exon-scaffold_456-1510915933:307972..308262 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1575043694:307972..308262 | TCONS_00066494-exon-scaffold_456-1575043694:307972..308262 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1491911889:309599..312362 | TCONS_00066494-exon-scaffold_456-1491911889:309599..312362 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1510915933:309599..312362 | TCONS_00066494-exon-scaffold_456-1510915933:309599..312362 | Clytia hemisphaerica | exon |
| TCONS_00066494-exon-scaffold_456-1575043694:309599..312362 | TCONS_00066494-exon-scaffold_456-1575043694:309599..312362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:306435..312362 + |
Blast
BLAST of TCONS_00066494 vs. Swiss-Prot (Human)
Match: ZFAN6 (AN1-type zinc finger protein 6 OS=Homo sapiens GN=ZFAND6 PE=1 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 2.417e-38 Identity = 86/205 (41.95%), Postives = 118/205 (57.56%), Query Frame = 1
Query: 382 SKTNFLCKMGCGFFGNSSFDGMCSKCYKDHLKRQQQPSPSAGRTSPGTAGSIGSI---------------IANXXXXXXXXXXXXXXXXXXXXXXXXXXINIPSSSTGLRTPEKGLASAYVEEDTSPNPESPLGESLDSASPGKLKKRNRCYSCRKKVGLTGFECRCGGLYCGIHRYSDKHNCTFDYKADAREQLTKANPVVVGE 951
S+ LC GCGF+GN +GMCS CYK+HL+RQ S GR SP A S+ S+ ++L + S S+ + + ++++ + S+S PE A V DT+ P +SL+ +K+NRC+ CRKKVGLTGFECRCG +YCG+HRYSD HNC+++YKADA E++ K NPVVVGE
Sbjct: 8 SQVPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQNS---SNGRISP-PATSVSSLSESLPVQCTDGSVPEAQSALDSTSSSMQPSPVSNQSLLSESVASSQLDSTSVDKAVPETEDVQASVS-DTAQQPSEEQSKSLEKPK----QKKNRCFMCRKKVGLTGFECRCGNVYCGVHRYSDVHNCSYNYKADAAEKIRKENPVVVGE 203
The following BLAST results are available for this feature:
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