|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066515 ID=TCONS_00066515|Name=TCONS_00066515|organism=Clytia hemisphaerica|type=transcript|length=3193bpRun BLAST on NCBI transcript from alignment at scaffold_456:513520..525685+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066515 ID=TCONS_00066515|Name=TCONS_00066515|organism=Clytia hemisphaerica|type=transcript|length=12166bp|location=Sequence derived from alignment at scaffold_456:513520..525685+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066515 vs. Swiss-Prot (Human)
Match: MIB1 (E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1) HSP 1 Score: 356.295 bits (913), Expect = 2.406e-105 Identity = 291/1062 (27.40%), Postives = 452/1062 (42.56%), Query Frame = 1
Query: 115 VTWCHGKIEKFPKTTS-QLYVYDIGPAGVQHVGIVCDGCRTKGLVDYRWKCTVCHDFDLCSFCYHGNTHNTEHVFQRIDIPGAKPVQVRKRGGEKQARLNGFFQGAKVKRGKDWEWGNQDGGIGTMGTVLGSYDWTGAFETSAVRSGVTISWEKSKLKANYRIGFNGKVDLICENPAFGGQFYSSHLANTKTLLEHKRSSSQGKQFNTGDAVVMCKKIETLVSAQEGSGGFIKEMTKCIGVVGRVVQTI-DKGVFVQFGISERPDDXXXXXXXXXXKKQKHWLLNRDILQKV----------------AEFQPGDTAKVINDKDTFIVMQTNIGNYHPSQDVLVGE--EVKIIRNDGEKLQIEYGNNKVFMSCGAVSKCEDQADXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXQNRXXXXXXXREEQKPVIKKPQAKKERS--LRELVEKGDDSSVAKY--LEERPYM-INQFENGSTSLHVAVFNNDSEIVDIFLKKHADLSVADDNGDTVLHIAASKNLIGIGRKLVRSQCAVNKKNKSEMTALSVATHKGYVDFVRMLVFEKCDTAQPDYEGNIPLHVACKVGNKNLVRILLENKKDLLVPNRLGLFAIHIALDVENKEIIEMILDKSPEA--LNSTQPDGSTPLHFVVRRGKAPMVEYIVHLITKYRYNIDSRTKQGQTALHLACMEGFLAIVKLLLQHGADINAEMNDGNTSVLMCVLKHRMLFNLPPQLQGNELIRPDLRTVKSHFE---NTNANGIIT-----------ACFLLENGANLNHFNHAGKSALDVCEDSELTKLLCEFGKKHRSLQEXXXXXXXXXXXXXXXXEKKSTKPKIQKQESELDFDPCPLCQ--KRTPVEGRFQPCKHALFCYQHAETFQKCPQCFSEVTHLSRLSVERLPNCKFCAEKQINITFKPCGHQIACFECSKPFRVCITCEQRIEAKVPIVDGSXXXXXXXXXXXXXXXXNXXXXXXXXXXXXXXXXXXXXXXXXXXIPEEDENQLCIICFERPRNNVFQCGHTCCKVCSYAIDECHICRQTIKQRIFIY 3171
V W +G + + + L + D P G++H G +CD CR + ++ RWKC C ++DLC+ CYHG+ H+ H F RI PG++ V + R K+ G F GA+V RG DW+W +QDGG G G V DW+ S+ S + W+ K YR+GF G DL C A GG FY H +L + + GD V + +E + S Q G GG+ M + + G V D + VQ+ R W N +L K ++FQ GD +V D + ++Q G + + +G+ V+ I +D + L++E + AVSK + E ++KK +E ELV+ + VAK L +RP + +N G T++ A N +I+ + LK++ D+ D +GD +H AA + + L R +N +NK T L +A +KG++ V+ L+ C + D EG+ PLH A +++ +LLE D+ + N G A+H A N + ++L K P ++ + DG T LH + E +VH + N+D + QTALHLA IV+LL++ GA ++ + DG+T L L+H L L QLQ + D+ V + +E NT G+ T ACFL NGA+L+ N G+S LD+C D L K L + K+ S Q S P + +SE + C +C KR + F PC H C + +KC C +V SR +E C C++K+ + F+PCGH AC C+ + C+ C +E +VP + +S ++ + + E +C +C +R +N +F CGH C++C + EC ICR+ I++RI +Y
Sbjct: 50 VVWDNGTAANYRCSGAYDLRILDSAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGSERVLLESRRKSKKITARGIFAGARVVRGVDWQWEDQDGGNGRRGKVTEIQDWS----ASSPHSAAYVLWDNGA-KNLYRVGFEGMSDLKCVQDAKGGSFYRDHCP----VLGEQNGNRNPGGLQIGDLVNIDLDLEIVQSLQHGHGGWTDGMFETLTTTGTVCGIDEDHDIVVQYPSGNR------------------WTFNPAVLTKANIVRSGDAAQGAEGGTSQFQVGDLVQVCYDLERIKLLQRGHGEWAEAMLPTLGKVGRVQQIYSDSD-LKVEVCGTSWTYNPAAVSKVASAGSAISNASG-------------------------------------ERLSQLLKKLFETQESGDLNEELVKAAANGDVAKVEDLLKRPDVDVNGQCAGHTAMQAASQNGHVDILKLLLKQNVDVEAEDKDGDRAVHHAAFGDEGAVIEVLHRGSADLNARNKRRQTPLHIAVNKGHLQVVKTLLDFGCHPSLQDSEGDTPLHDAISKKRDDILAVLLEAGADVTITNNNGFNALHHAALRGNPSAMRVLLSKLPRPWIVDEKKDDGYTALHLAALNNHVEVAELLVH---QGNANLDIQNVNQQTALHLAVERQHTQIVRLLVRAGAKLDIQDKDGDTP-LHEALRHHTLSQL-RQLQDMQ----DVGKVDAAWEPSKNTLIMGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPNLCKALAKCHKEKVSGQ------------------VGSRSPSMISNDSET-LEECMVCSDMKRDTL---FGPCGHIATCSLCSPRVKKCLICKEQVQ--SRTKIEE---CVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFI----MCCGGKSSEDATDDISSGNIPVLQKDKDNTNVNADVQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 1006 The following BLAST results are available for this feature:
BLAST of TCONS_00066515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.