TCONS_00066536 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066536
Unique NameTCONS_00066536
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066536 ID=TCONS_00066536|Name=TCONS_00066536|organism=Clytia hemisphaerica|type=transcript|length=2475bp
cgttaatcaccatggcaataatttcaaaacgaggcaagtgatgttcgtaa
cgtaatttatgaaaaggtatagcttaaagattgaaataattttccCATTA
GATCCGAGTTGAATGGCGAGCGATCATTTTTTGCTCCTTTGGTGGTTTAT
TTGGCTGCATTCTATCGTTAGAAGATTTGGATACACGACTTCGACCTCAA
GTCAAAAAGATGGGCTTTGTGTCCTTGTTCTTCGCTTTCGCTTTTGCACT
CTTTCTACTGAACCGTGTTCATAAaagaaaaacgtttaaaatcatCCCAG
AGTTTTGTTGGTGGAAAGCTCTCATCTTGATTATAACAGGTTTTGTTGGT
GGAGTATTTACTGGACTGTCTGGAACTGGTATTGATATTTGTTGCTTCAG
TATTCTAACGTTATTATTCCGTGTGACGGAGAAAACGGCGACACCGACGT
CTATTGTTCTCATGGCAATCAATTCAATGTTTGGAATGTATTGGAAGAAT
ATTATGATCACTCCAATAAATGTAGAGGCATGGAAATATGTAGGTGTGGC
ACTTCCGATTGTAGTAGTTGGAGCTCCGCTAGgcTCTGTAATTGGTTCTC
ATTTTCATCGTCAGGCGCTCGCTGCGTTAAATTATATTACCGATACCGTA
GCTTTGATAAGTGGTTTTGCAATCGTCAGACCGCTTGATAGCGAAGTTGT
TGGAACAGCTGTGGGAATCATTATTGGTGGATTTCTTTTTTACTCTCTAA
TCACGTGGATTGGTGGACGAATGCTAGATACGATCGTGGAAAGACAAGAG
AGAAATGAAgttaatcaaaatgaaaaagaagaactgAAAAACGTGTCAAT
CATGTGACTCGAATCCACACTATATTGAAGTGCTATCTAAGAGAGCTTGA
ACTCAAATTTCAAGTTTGTATAGCGCTTTTATGaatgacattttttattt
gtcaataaggaggggggggtactagggcaagatgggttacggggatgctc
cgctggtcagggtacctttcttaacctccacgagtcccaggtagggtcgc
aaaaaaacaccaaaatagaaaaatcagtctcacgtagggtgcctattttt
ggaaaatttgggaaaaaagtagaaaattttggaatttcagtcccattcag
ggtcacttttttcgcaaatttagagtcccacgtagggttcatttttcgaa
cctcagcggagcaccccgtcggtcgacaagggtagtacccccccccgggc
ttcaGATAGTCTAGTAGTAATCGATAAGCTAAGTCAAacagttgatattg
attagcctcgagctaagtacacattgtactacttCACATCaagtttaaag
aaaagaaacataaacattattttttctttataagctgTTATTTTAAAGGG
TTGAGTGCTGTTCAAAGTTAATTCTTGACTGTGCTATGGTATTCGAATAT
TGAGCAATACTTTAAAAACTTCTTGTATGGTGGGTTGTTGATAGGAGATT
TCttatttgcaaattttggtATCGCGAGGAGAAAATTATTGGTGTTGTAG
AGACTTCTACAATATCGGTCAaagtataaatataattttggttaatttct
cgtttttagcattttaaaatTCGGgtgagaaagttgattttgggctatct
gataagtatttcaattcgggaggggtttatagacttccaggttATAGTCT
GAGCCCTATTGTACAATTcttggacttttggatcctcagatcctaaggtt
ccAAACTTAAGTCTaccgttaaaactctacccttccaacctaatttttTG
TGGTTAtataagatttcgtaggaatttttttctcaaatattatgactttt
atTGTAGAGACTTCTAccatcttttgaaatttcaccTGTGAGGAGGTTTT
GAGCTTTATTATTGAGTttgagtttgtttgttttttggttTGGCTGTCAT
CCAAAATCTGTTTGCCGTGGATTACTTTTAACCTAGTTTGAATCACAGAC
CTTGCTTTATAGATATGATTCCTATATAGAAACTGTAAGAAACTTTTtgt
cgctagaggatgagcagaattCTTTTAATGCTAAATGCTAAATGCTTTAA
ATAAATGAAAGCTGATTACCATCGTTATACTTTTGATCTCGAAtctagaa
aacatttttttataagagcatccaaaatttttgaagtcttgggatgtttt
taactttttgggtttcaagcctaaaatgttcttaatattttggccatcaa
agccttatagTTTGTTCCTTGTAGTAGGATATGCTTGCTCATGGCCACAC
TTGATGCAAGACTTTGATCTTCATCTATCCGCACTCCGTTAATTTCTTAA
CTTTCTTTATGTTTTTTATgttcacttaccggttttctctatgttacacg
ttttttttataagaatacactttataagaatgtccatgatgaaaatgacc
aaaaaattaagaatatgctaaaaat
Run BLAST on NCBI

protein sequence of TCONS_00066536-protein

>TCONS_00066536-protein ID=TCONS_00066536-protein|Name=TCONS_00066536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
MGFVSLFFAFAFALFLLNRVHKRKTFKIIPEFCWWKALILIITGFVGGVF
TGLSGTGIDICCFSILTLLFRVTEKTATPTSIVLMAINSMFGMYWKNIMI
TPINVEAWKYVGVALPIVVVGAPLGSVIGSHFHRQALAALNYITDTVALI
SGFAIVRPLDSEVVGTAVGIIIGGFLFYSLITWIGGRMLDTIVERQERNE
VNQNEKEELKNVSIM
Run BLAST on NCBI

transcript from alignment at scaffold_456:49442..59729-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066536 ID=TCONS_00066536|Name=TCONS_00066536|organism=Clytia hemisphaerica|type=transcript|length=10288bp|location=Sequence derived from alignment at scaffold_456:49442..59729- (Clytia hemisphaerica)
CGTTAATCACCATGGCAATAATTTCAAAACGAGGCAAGTGATGTTCGTAA
CGTAATTTATGAAAAGGTATAGCTTAAAGATTGAAATAATTTTCCCATTA
GATCCGAGTTGAATGGCGAGCGATCATTTTTTGCTCCTTTGGTGGTTTAT
TTGGCTGCATTCTATCGTTAGAAGATTTGGATACACGACTTCGACCTCAA
GTCAAAAAGATGGGCTTTGTGTCCTTGTTCTTCGCTTTCGCTTTTGCACT
CTTTCTACTGAACCGTGTTCATAAAAGAAAAACGTTTAAAATCATCCCAG
AGTTTTGTTGGTGGAAAGCTCTCATCTTGATTATAACAGGTTTGTCTCTC
TGAAATAAATTTTTATGAACCCCTCAATAATTTGAAAAGAAAAGCTACCT
TAAATGAATTAATTTTGGCGGGGATTTAATTTGTCGAATTTTGTGGTTTT
ATATGACCGTACACTATGAAGTTATGCTACCGACTGAATATACTATCTTT
CAAATGTAATAGATACGTAATATAATAATACGCACCGTGTTAGCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGAATCATTCTCG
ATTTTGCGAATTCTTTCGTTGCGTTTGACGTGAAGTTTGAGCCATTATCA
CTTACGACTTTGCTTGGAGCACCATAACGATTAAAGAAGCGCTCAAGCAT
TTGAATAAAGGCGTCGGAGCCGTAATCTCCAGCAATGTCTAAATAAACAG
CTCGTGTCGTGGAGCATGTGATCAACGCGATCCATGCTTTGTATGTAGAT
TCATCGGTACAAAACGTGTTTCGAATATGAATGGGACCAGCGTAGTCCAC
GCCAATATTTGTAAAAGCAAAGTTTTTATCAAGACGTTCTTTTGGAAGAA
TAGGGACATCAGGGTACCGACACTNCAGTATCTCTTGTTTCTCGTCTTTG
GTGCTTTCAATAATTACAAGTTTGTTTATGGGCCGACGCAAAGGGCCATT
AATTGTCTTTACGACTGTTGCACGAACTTGATTGTCTTTACCACTAATAG
TTTCTTCGACACGACCCATTTTCCAAGTATTTCTAGAGCCCGTGTCTTCG
ATCAAACAAACGTCACCAACTTTGATAGTGGTATCAATACCACGCTTGCT
TTTAACATAGTCCCGTTCTCGCAAGCTGGTTATNAACAGTTCTTACGAGT
GAACGTCCTTTTGGAATCCAATACGATTGACGTAGGTGATTCAAAGTTTC
TTTCGTCTTGTTGTGACCAACGCTAACGTGGCTGTCACGAACGACCAGTA
GTGTGAACGGATGACGTCTTGGAAGTAGGATTGGATACTTTGTATCGAAC
GGAACAGGAGCGTTGCCAATACGACCATGACAACGAAGGATGCCGTTGGA
ATCTGTGAATACGTTGAGTGATTTCTTCGTTTGATCAAATTGTTTGTCAT
CAAAGTCTTCTTGTACGTCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTGACGGTGTAGCAACGCCCGAATCGA
CAGTGGGCTTCAGGTAAACACAACAACCGTAGGCGTCTTGCGACGCGTCG
CTAAAACCGTGAAGTTCATGCGACGTAATATTTCCATTGTTGGAATCATA
AGCTCTATTAAAACGAATTTCACTACATTCTCTCAAATCATTAATCAGTT
CTTTCCAAATTTTCAACGAGTCGTCAGGAATGGGCTCATCCCATTGTAAG
TTTTGTGTACAAAGTTTTTGAAATAACAGTTTANATGTTGGAATCATAAG
CTCTATTAAAACGAATTTCACTACATTCTCTCAAATCAGTAAATCAGTTC
TTTCCAACTTTTCAACGAGTCGTCAGGAATGGGCTCATCCCATTGTAAGT
TTTGTGTACAAAGTTTTTGAAATAACAGTTTAAATTTCACGACGAGTGGA
TTAATCAACCCCAATGGGTCAAAGATTGATGAAGCGAATTGTATAACGTT
TCTTTTCGTAGGATTTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNACCAATCTTCTTGGCTCGGAATCGAAGTAACGTCCCGA
AAAGTGACGAAGTAAGCGACGGACCAGCGTGTAAGCAATCGTTCAAAGCG
GGACCATCAACAGAGGAGCTGGCGTCGAACACCATGCGAATCTTGGTTGT
CAGCCTGTCTAATCGTAGAACAGGTCGGTGTGGCATGTAGTACGTTTGTC
CTTCAATAGACGTATCAGGAGCGACTTCAATGATGCCTTGTCGAAGTTGA
TCTTTGATGATTTCATCATAATCGTGTAACAATTGTTCGTTAGTCTTAAA
TTTCGTAAGCAGACTGTTCATTCGACGCGTAGAGTTGTAGAGATTNGTGG
GGGAAATATACGACAGTTGTGAACCGAGATCAAATAAAATTCTCATTTCT
TTGGAGACGTTCGGGCTTCAAATCGTTGCAGTAGCTGTTTGTAAGTATAC
TTAACAACTGTGTGTAGACAAACATGTGATGTTATCACTCTCATCCTTTT
CTTTATTATGTGTGCTCTCTCCCTTTGAATCATTTGGCGTAGTCTTCATC
TTCCTCACATTGATCACTAGATGTTGATCGATTTCCAAAACTTTCTCTAA
CTTCACACTCAAAGTTTCATTTATTGTTTTTAAATAATCCAAGCTATTTT
GGTCAACTNAATCAATATCACATGTCTGACAGTTAAGCGTGTGTGCAGAC
AGAGTAACAGAAGCTTGAGTTGTTGAGCAAACTGTGTCAGCTGTGAGTGG
GCCTGAGAAAATATAGCCCAGCTTAGTATCCGTTCCAACTAGTCCCTTGG
AACTACGAATAGTTTTATTCTTTACAAATTTCCAGAAGTTATCTGCACCG
ATAAGAAGATCAACGCGTAAAGACTTTTCACAAACAAGTCCTTTGTCAGC
AACTTGTAAATTTTGGNTTTGTTTTATTTCTTATTTATTTTATATCTTAT
TTATTTGAATTACTAATCTTCACTCACACCACCAGCGAGCACAAGTTAAG
GCGAGAGAAACAGAGTCAAGAACCATACATACAGTCAATGAAATTCAAAA
TTATTAATAATCCACAATCCAGGAACATCAAGTTCCAAATAAACAATTTA
AATCAATAACAGGAACCAACAATCAAGTATCAAGTTCCAAATTAAACAAT
ATAATCAATCAAATTACTCAATTATATGAACTGTCCAAGTTCAAAACAAC
AATGTGTAATAAACCAACAATTTTGACCATATGAACATTCAAGTTCAAAA
TAAGTTCACCATACATAAGCTACCAAGCTTACAAAAATCAAAACATTGAA
CTTCACCCGAGTTCAAACAAGCTACCAAGCTTATAAAAATCACAACATTG
AACTTCACCCGAGTTCAAGGGTTCAAGCAAATAATTTCTTCAGTGAAAAC
ACGTTTTTCACAAAAACTAATTAAAGAAAAACAAATACATAACTTCTCAA
ATTTCATGTATTTCTAACATCCGGTTCGAAGGACCATGTTGTTTTATATG
ACCGTACACTATGAAGTTATGCTACCGACTGAATATACTATCTTTCAAAT
GTAATAGATACGTAATATAATAATACGCACCATAGACTATAGACAGGAGA
CCCGTCGTGTGTTTTTTTACAAGACGGGTTCGAGCTGTGAGTCCAATATT
GGACTCACATTTTTTACAGTGGGAAATTCGAATTTAGCGCTGTCCTCACT
TACTAAAATAAAAACCAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCGTTATTAGGATCTGAGAAATTCAAACTCTCAGCCCGTAC
CATGCTATACATTTCGCCATCAGTTTATCAAAGAAGAAATCATAGCATGG
ATTCCCAGGCTACATAGACTAAAGAAAAATTTTGAAATTTTTCTTTAGTC
TATGTACGCACCGTGTTAGCTATAATACAATAATACAAGAATATAAATAT
ACGACAAATTTTGACAAAATTTGAGTCATTTGACTAAAAATTGTGCTGTA
TTTCAGTAGGAAATCATAGCGAGGTTACGTGACATTACAAAGCCCTTCGC
AGTAGCGTTGACAAGGGGGCGCAAAGAGCAGATTTTTATGACACTGTAAT
TATCTATTTGTAATGTAAAAAGATAATTACTGGGTCATAAAAATCACAAC
ACAAATCTTCCCAGCTGGCACACAACGTTGTTTCAACGTTCATCTAACGT
TATATGGACGTTGTGAACGTTAAATAAACGTTGAAACAACGTTGTGTGCC
AGCTGGGTTGCGCCCCTTGTCTACGCTACTGCTTCGGGCTTTCTTAAATC
TCAACCCCATAAGTTGATTCAAATTTCCTTTTTCTTAGGTTTTGTTGGTG
GAGTATTTACTGGACTGTCTGGAACTGGTATTGATATTTGTTGCTTCAGT
ATTCTAACGTTATTATTCCGTGTGACGGAGAAAACGGCGACACCGACGTC
TATTGTTCTCATGGCAATCAATTCAATGTTTGGAATGTATTGGAAGAATA
TTATGATCACTCCAATAAATGTAGAGGCATGGAAATATGTAGGTGTGGCA
CTTCCGATTGTAGTAGTTGGAGCTCCGCTAGGTAATTATTGATATATTTT
ATAAGACACCCCCTTCTCACTGCTGAGTACCGTGCCCGTAACAGAGAAAA
GTGGAAAGAGTTTGTCTCCTAGAAGTGTGCAAAGATCCCCGTGGGATTAT
ACACTTAAGTCAAGTAAGTCAAATAAGTCTTTTTATAAGGTGTTTGTGTC
TTTCTATTATGGGTTATTTCAGAAGTATCATATGGCTTATATACCCATTG
AGGAGGTGCGATGTTCAGGGTGGTCTGAAAAATAAAAAATCCAAAGCAGT
CTGGTTTTTGCTGGAAAATCCAGGATGGTCAAAAAAATAAAGAAAAAATC
CAAGGGGTCACTTTTCCTAAAAAATACCTCCTCAACATATGGGGTACATT
TTTTTCCTGGAGTAGCCTATTATCGATGTAGAATGTTTTTTAATACTAGG
GCATCAAGATATAAGTGACTCAGAAAAAAAAACAGAATGATTTTATAAAG
ATCAACGATGTAGATACGGTAAAACACAGCATGTTAACAGTACTTTCTAG
CCTCAATAGTCATATTGCAACATTTGGTGTCAAAACAGTAATTGTTCGAT
GTTGTGGAATAATCAGACAAATTTTGTGTATATAATAATGCTATCAGATA
AAAAACATTCATACACAGATTTTCAGTGATAGCAGTTCAAAGAGACTAGG
CGAGTTTTAAAGTAAAAGGGTTTCCTAGCGGTTAGTGTGGACATGAATAC
GTGAATACACTCTTCTCGAGATGCATAAATTTATTGCTGTCCTCGTTTTC
AAACAGATTTCATTGCTATGAAATTAGTATATGTAATCACATGATAACGA
GTGCAATTCGAATATAATTGCACGAGTGATTTTTTTTGTTATTAATTTTC
CGAGTCCGAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNATTAAAACGTTCGATGCAAAAAAAATGTAAG
AAAAAACATTAAAATCGATTTTGTAAACATTGGCGCGGCATTGGAGAGTG
TGATTAACGATTAATTGCTCTCTACAGGATGCAATTAACGATTAATTGCT
CTCTTTGAGGGGGCGCCAAATAAGAAAAAATAACCCATCGTGCGATTATA
CATTTAAACCAATTTAAATTCTCAAAAGGCAAACATTAACTCTAAAACAA
AAGTACTTGAAATTCAAAATGTCTCATGAGGTGTAACCAACACAATTATT
ATTGTGAATATGTAATTTTCCCGTAATTTTATAGCAATGAAATCTGTTTG
AAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGTGTATTGAAA
ATATTGGCGTGAACATAAGAATCCAATTTTTGATAGCGTGAATGTGTTAT
TTTTCCTTTTTAGCCAAATTTTGTTCAGTATTACAATATCAATGAATAAA
TTGCATACAGCATGAATGCGTGAACTTTGGGTCCGCTGGAGGTGCTCGTA
AAATTAATGATCCTTCATTTCGGAAATTCTTTTTTTTTGTTTCAGGCTCT
GTAATTGGTTCTCATTTTCATCGTCAGGCGCTCGCTGCGTTAAATTATAT
TACCGATACCGTAGCTTTGATAAGTGGTTTTGCAATCGTCAGACCGCTTG
ATAGCGAAGTTGTTGGAACAGCTGTGGGAATCATTATTGGTGGATTTCTT
TTTTACTCTCTAATCACGTGGATTGGTGGACGAATGCTAGATACGATCGT
GGAAAGACAAGAGAGAAATGAAGTTAATCAAAATGAAAAAGAAGAACTGA
AAAACGTGTCAATCATGTGACTCGAATCCACACTATATTGAAGTGCTATC
TAAGAGAGCTTGAACTCAAATTTCAAGTTTGTATAGCGCTTTTATGAATG
ACATTTTTTATTTGTCAATAAGGAGGGGGGGGTACTAGGGCAAGATGGGT
TACGGGGATGCTCCGCTGGTCAGGGTACCTTTCTTAACCTCCACGAGTCC
CAGGTAGGGTCGCAAAAAAACACCAAAATAGAAAAATCAGTCTCACGTAG
GGTGCCTATTTTTGGAAAATTTGGGAAAAAAGTAGAAAATTTTGGAATTT
CAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTAGAGTCCCACGTAGGG
TTCATTTTTCGAACCTCAGCGGAGCACCCCGTCGGTCGACAAGGGTAGTA
CCCCCCCCCGGGCTTCAGATAGTCTAGTAGTAATCGATAAGCTAAGTCAA
ACAGTTGATATTGATTAGCCTCGAGCTAAGTACACATTGTACTACTTCAC
ATCAAGTTTAAAGAAAAGAAACATAAACATTATTTTTTCTTTATAAGCTG
TTATTTTAAAGGGTTGAGTGCTGTTCAAAGTTAATTCTTGACTGTGCTAT
GGTATTCGAATATTGAGCAATACTTTAAAAACTTCTTGTATGGTGGGTTG
TTGATAGGAGATTTCTTATTTGCAAATTTTGGTATCGCGAGGAGAAAATT
ATTGGTGTTGTAGAGACTTCTACAATATCGGTCAAAGTATAAATATAATT
TTGGTTAATTTCTCGTTTTTAGCATTTTAAAATTCGGGTGAGAAAGTTGA
TTTTGGGCTATCTGATAAGTATTTCAATTCGGGAGGGGTTTATAGACTTC
CAGGTTATAGTCTGAGCCCTATTGTACAATTCTTGGACTTTTGGATCCTC
AGATCCTAAGGTTCCAAACTTAAGTCTACCGTTAAAACTCTACCCTTCCA
ACCTAATTTTTTGTGGTTATATAAGATTTCGTAGGAATTTTTTTCTCAAA
TATTATGACTTTTATTGTAGAGACTTCTACCATCTTTTGAAATTTCACCT
GTGAGGAGGTTTTGAGCTTTATTATTGAGTTTGAGTTTGTTTGTTTTTTG
GTTTGGCTGTCATCCAAAATCTGTTTGCCGTGGATTACTTTTAACCTAGT
TTGAATCACAGACCTTGCTTTATAGATATGATTCCTATATAGAAACTGTA
AGAAACTTTTTGTCGCTAGAGGATGAGCAGAATTCTTTTAATGCTAAATG
CTAAATGCTTTAAATAAATGAAAGCTGATTACCATCGTTATACTTTTGAT
CTCGAATCTAGAAAACATTTTTTTATAAGAGCATCCAAAATTTTTGAAGT
CTTGGGATGTTTTTAACTTTTTGGGTTTCAAGCCTAAAATGTTCTTAATA
TTTTGGCCATCAAAGCCTTATAGTTTGTTCCTTGTAGTAGGATATGCTTG
CTCATGGCCACACTTGATGCAAGACTTTGATCTTCATCTATCCGCACTCC
GTTAATTTCTTAACTTTCTTTATGTTTTTTATGTTCACTTACCGGTTTTC
TCTATGTTACACGTTTTTTTTATAAGAATACACTTTATAAGAATGTCCAT
GATGAAAATGACCAAAAAATTAAGAATATGCTAAAAAT

Coding sequence (CDS) from alignment at scaffold_456:49442..59729-

>TCONS_00066536 ID=TCONS_00066536|Name=TCONS_00066536|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_456:49442..59729- (Clytia hemisphaerica)
GCTCTGTAATTGGTTCTCATTTTCATCGTCAGGCGCTCGCTGCGTTAAAT
TATATTACCGATACCGTAGCTTTGATAAGTGGTTTTGCAATCGTCAGACC
GCTTGATAGCGAAGTTGTTGGAACAGCTGTGGGAATCATTATTGGTGGAT
TTCTTTTTTACTCTCTAATCACGTGGATTGGTGGACGAATGCTAGATACG
ATCGTGGAAAGACAAGAGAGAAATGAAGTTAATCAAAATGAAAAAGAAGA
ACTGAAAAACGTGTCAATCATGTGAGTTTTGTTGGTGGAGTATTTACTGG
ACTGTCTGGAACTGGTATTGATATTTGTTGCTTCAGTATTCTAACGTTAT
TATTCCGTGTGACGGAGAAAACGGCGACACCGACGTCTATTGTTCTCATG
GCAATCAATTCAATGTTTGGAATGTATTGGAAGAATATTATGATCACTCC
AATAAATGTAGAGGCATGGAAATATGTAGGTGTGGCACTTCCGATTGTAG
TAGTTGGAGCTCCGCTAGATGGGCTTTGTGTCCTTGTTCTTCGCTTTCGC
TTTTGCACTCTTTCTACTGAACCGTGTTCATAAAAGAAAAACGTTTAAAA
TCATCCCAGAGTTTTGTTGGTGGAAAGCTCTCATCTTGATTATAACAGGC
TCTGTAATTGGTTCTCATTTTCATCGTCAGGCGCTCGCTGCGTTAAATTA
TATTACCGATACCGTAGCTTTGATAAGTGGTTTTGCAATCGTCAGACCGC
TTGATAGCGAAGTTGTTGGAACAGCTGTGGGAATCATTATTGGTGGATTT
CTTTTTTACTCTCTAATCACGTGGATTGGTGGACGAATGCTAGATACGAT
CGTGGAAAGACAAGAGAGAAATGAAGTTAATCAAAATGAAAAAGAAGAAC
TGAAAAACGTGTCAATCATGTGAGTTTTGTTGGTGGAGTATTTACTGGAC
TGTCTGGAACTGGTATTGATATTTGTTGCTTCAGTATTCTAACGTTATTA
TTCCGTGTGACGGAGAAAACGGCGACACCGACGTCTATTGTTCTCATGGC
AATCAATTCAATGTTTGGAATGTATTGGAAGAATATTATGATCACTCCAA
TAAATGTAGAGGCATGGAAATATGTAGGTGTGGCACTTCCGATTGTAGTA
GTTGGAGCTCCGCTAGATGGGCTTTGTGTCCTTGTTCTTCGCTTTCGCTT
TTGCACTCTTTCTACTGAACCGTGTTCATAAAAGAAAAACGTTTAAAATC
ATCCCAGAGTTTTGTTGGTGGAAAGCTCTCATCTTGATTATAACAGGCTC
TGTAATTGGTTCTCATTTTCATCGTCAGGCGCTCGCTGCGTTAAATTATA
TTACCGATACCGTAGCTTTGATAAGTGGTTTTGCAATCGTCAGACCGCTT
GATAGCGAAGTTGTTGGAACAGCTGTGGGAATCATTATTGGTGGATTTCT
TTTTTACTCTCTAATCACGTGGATTGGTGGACGAATGCTAGATACGATCG
TGGAAAGACAAGAGAGAAATGAAGTTAATCAAAATGAAAAAGAAGAACTG
AAAAACGTGTCAATCATGTGAGTTTTGTTGGTGGAGTATTTACTGGACTG
TCTGGAACTGGTATTGATATTTGTTGCTTCAGTATTCTAACGTTATTATT
CCGTGTGACGGAGAAAACGGCGACACCGACGTCTATTGTTCTCATGGCAA
TCAATTCAATGTTTGGAATGTATTGGAAGAATATTATGATCACTCCAATA
AATGTAGAGGCATGGAAATATGTAGGTGTGGCACTTCCGATTGTAGTAGT
TGGAGCTCCGCTAGATGGGCTTTGTGTCCTTGTTCTTCGCTTTCGCTTTT
GCACTCTTTCTACTGAACCGTGTTCATAAAAGAAAAACGTTTAAAATCAT
CCCAGAGTTTTGTTGGTGGAAAGCTCTCATCTTGATTATAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041626XLOC_041626Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066536-proteinTCONS_00066536-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066536-exon-scaffold_456-1575043694:59391..59729TCONS_00066536-exon-scaffold_456-1575043694:59391..59729Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1575043694:53149..53391TCONS_00066536-exon-scaffold_456-1575043694:53149..53391Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1575043694:49442..51334TCONS_00066536-exon-scaffold_456-1575043694:49442..51334Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1510915933:59391..59729TCONS_00066536-exon-scaffold_456-1510915933:59391..59729Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1510915933:53149..53391TCONS_00066536-exon-scaffold_456-1510915933:53149..53391Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1510915933:49442..51334TCONS_00066536-exon-scaffold_456-1510915933:49442..51334Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1491911889:59391..59729TCONS_00066536-exon-scaffold_456-1491911889:59391..59729Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1491911889:53149..53391TCONS_00066536-exon-scaffold_456-1491911889:53149..53391Clytia hemisphaericaexon
TCONS_00066536-exon-scaffold_456-1491911889:49442..51334TCONS_00066536-exon-scaffold_456-1491911889:49442..51334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:49442..59729 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.332116	0.194597	0.40963	0.418212	7.80494	5.4622	6.75006	6.34145	6.67036	7.40394	8.10263	4.53108	35.4747	41.9939	4.40374	4.49327	5.65124	11.7916	39.8446	28.7204	3.41717	3.3523	1.34107	1.64143	5.34623	6.55302	1.7329	2.01286	2.27111	2.56832
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002781TM_pro_TauE-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top