Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066551 ID=TCONS_00066551|Name=TCONS_00066551|organism=Clytia hemisphaerica|type=transcript|length=1382bp CAGTTTTTCAATATGAATCATGCTGCTCTATTGTCCTCGGGAACGACAAT TTATATGTCAATGTTTTGAATGGTACAAATTATCGCAGTCTTATATTGAA TGTACTTGTAAGCATTTGCTTATGTATATATACGTGTCGTtgggaaataa aaaatgaaagacgAACGTTCGTTGACAGTCAAAGATTCAAaaatgttCGA TATGTTAACACGACATAGCCGTAATCGATATCGGATCATTGTTCTATCCT TAATCTTCGTCACATCAATATACGTTTTTCTTAATAAACGTAATTGGGCA TGGTACAATCGGTCTAGTGGGGAGAGTATTTGTGAAACACCAGAGCCTGA AATGAAGGACTTGATTGCACTAGCGACTGATACCCGTGACGTCTTACACG GACTGAAAATGACGTATTTCTTGATATATGGCAGCCTGTGGGGCGCATTA CGACACAATCGACCACTAGCCTGGGACAACGATTTCGATATCGGTTTAGT TTACGAAGAACTAAAAGATAATGGATTAGaacaaaaactttataaagaac ttcaaaagaaaaatatcaaaatttattatcGGTTATGGTTCGGTACCTAT CGGGTTACTCGGGATACCGCACGTGGTGATTTGATGATATACCGACGAAA CTATTTTGATACTTGTGTACGGTTAGGTATGGAGTCGTGGGTTTTCTTTG TGAATTATCGTAAGTATCATCAATTCCCATGTCGATTGATTAAGAAACCA TTACCTagtatgaaattttcaaaagtgaaCTTCACGGTACCGAGAGAAgg aaatgaaattcaaaaacatttttatccaGAAGACTGGTGGGTTGAAAGTA AACCATCTGGTTGTTGATGATGTTGATGAAACATTCAGAAACATTCTACG ATTTTAGCTTCTTGatttttcaatgaatttaaGACTTGAAAATGTTCAAG TATCATATGCCGGAGCAACACTGTTGTTATTCCGTTGTTGCTAGATTTAG TTAGTTTATATTAAGTNCGGAGTAACACTGTTGTTATTCCGTTGTTGCTA GATTTAGTTAGTTTATATTAAGTCcgaacttgatttttcaaaatgtgaaa tGAATGATTCTCTGATATAATATTTGGGCGAATATTAAACGTCGTCGAGT CAAAGcacatttaagggctctgaccatagtcgaaaaattgattttagtat ttgaacataaaagttatgtttaacacttttaacaaagaattgcctttaca aattgcttaagagtaattaaaaatttaattacaaaaatgacgctatgaac tttaaaaagacgttaataatatgttgtattaccttcttttataaaaagtg ctaacttttgatagtttttttcaaactgttcg Run BLAST on NCBI transcript from alignment at scaffold_456:442634..445999- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066551 ID=TCONS_00066551|Name=TCONS_00066551|organism=Clytia hemisphaerica|type=transcript|length=3366bp|location=Sequence derived from alignment at scaffold_456:442634..445999- (Clytia hemisphaerica) CAGTTTTTCAATATGAATCATGCTGCTCTATTGTCCTCGGGAACGACAAT
TTATATGTCAATGTTTTGAATGGTACAAATTATCGCAGTCTTATATTGAA
TGTACTTGTAAGCATTTGCTTATGTATATATACGTGTCGTTGGGAAATAA
AAAATGAAAGACGAACGTTCGTTGACAGTCAAAGATTCAAGTTAGTTTTA
TTTATTTTTGAGTTTCTCAAAAAGTCTTTCAATTTCTATTCATTGGGTAG
TATATGATGGTCTAGGGCTCACATTTTTTAATTATATATTTTTCACCGGT
TATAAAAATGAATATCCTAAGAATTTTCTACCAATGTAGTTTAGCCTTAA
AAACTATAGCTAGAGTGTAGTGTAAAACAAAGGCAAAGTTTCTCCACGCT
TTCAGGCTTGCACCAACACCTTCGAGAAAAGTTGTTGTTGTGCCAAAAAT
GAAAAAACGGTTTTCATAATTGCGTAACTTTACTAAATACACGCTTTTTT
TTATAAGAATGGTGTAAATCCATTTCATCATGGATATTCTTAACTTTTTT
GGGGAAATCATCCTAAAATATTGTTACAGCATTCTTAGGTTAGGATCCTA
ATTCAGACTAGATTTAACATTTAGTACATACGTCTCAAGCAGAAAATGGC
ATTTTTGTGAAAGAAGTGAACCTTACTTGAGGGCAATTGACAATTTATAA
TCGAAAATACTCTCGGGTACCTAATAGCCGCCCCCCCTGCTAATTAATTT
TTGGGAAAATGTTTTTGAAAGTTCCCTCTTTTGTCCTAATTCAGCTGTAT
TAGCCTCCATTTCAAAAATTTTCCACCCAGGACATTTTTATTCCAACCCC
CCCCCCCCCCCTCTTTCTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCACTTATTAAGTTTTGAGATTTTTTCC
AACCCCCCGGCTATTAGGTACCCGAGAGTAGGTTGTTTTGAGGTTTTGGC
CAATTTTCAGTTTCACTCTTAGTTCTTATAAAAAAAGCGTGTATTTAAAG
TATTGCAAAAGCAATCTTTCCTAACTCCTAACATTTTATCAACATCACAT
TTCATAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATTTCT
ATGGAGATTATATAGGAAGTAGTTTTAATAAAATCCGCTGGGAGCTAATC
ACCAATGCAACAATTTCAAAACGAGGCACGTGATGTTCGTAACGTAATTT
ATGAAAAGGTCTATTCTTTTCTTTTTTAGAAATGTTCGATATGTTAACAC
GACATAGCCGTAATCGATATCGGATCATTGTTCTATCCTTAATCTTCGTC
ACATCAATATACGTTTTTCTTAATAAACGTAATTGGGCATGGTACAATCG
GTCTAGTGGGGAGAGTATTTGTGAAACACCAGAGCCTGAAATGAAGGACT
TGATTGCACTAGCGACTGATACCCGTGACGTCTTACACGGACTGAAAATG
ACGTATTTCTTGATATATGGCAGGTATGTTTATTTGAAGTTTTTCTCTCT
GATGGTATTGAAACTTTTTTCGGATTGTTATTGTAAGCTTATTTTTTATA
AGAAAGAATATTTTTAAAGCCTTTGGATGTTCTTAACTTTTTGGGTTTTA
TGCCTTAAATGTGATCATAGTCCGTATAAAAAACCCCGGTCTGGAAGCCT
TTTGTTTCTTTCTATTGAACTTGAACTTGCATTGAGAAATTATTTTATTT
TGCTCACTTTTTGATCATGTGATTAACTTTTGAACCAATCCCAAGAGGAG
TATTGGTAATGTGATCCAAAACTGAGCAAATCGATTTTTATCTTTTGAAA
TTATCAACAAATGAAAAAGTTAATAAATAGTTACACAAAAGGCTTTTAGA
CCAGGGCTTTTTATACGTTCATAGTTAGAGGGGGGGGTCTTAGGTTTTGA
TGAACCAAAAGCAAGGGGGTGCTAAAAGTATGACTTTCTTAAGGGGGGTT
GCCAGTTAAGGGGGGTCTTTTTACCTAAGGGGGGTCTTCTTACCTAAGGG
GGGTCTTCTTACCTAAGGGGGGTCTTCTTAGATAAGGGGGATCTTCCTTG
AATTATGACTCTTGTACAATCGTTTCATTTATACTGATTTTCTAAGGGGA
GGGTGTAAAATTTTAAATGAATTTCATAAGGGGGTTAGCACTTAATGGGG
GGTCCTCTTACCTAAGGGGGGGGGTCTTGACCCCTCTAGAAACTATGAAT
ACGGACTATATGACGTGATAAAGTGATGTCACTGAATCCTGATGCATGGT
TGTGTTCAAAAAGTCAATACTATAGAGAACAATATGATACGAACGTTTGA
ATTTCCATCATTTTTTAGCCTGTGGGGCGCATTACGACACAATCGACCAC
TAGCCTGGGACAACGATTTCGATATCGGTTTAGTTTACGAAGAACTAAAA
GATAATGGATTAGAACAAAAACTTTATAAAGAACTTCAAAAGAAAAATAT
CAAAATTTATTATCGGTTATGGTTCGGTACCTATCGGGTTACTCGGGATA
CCGCACGTGGTGATTTGATGATATACCGACGAAACTATTTTGATACTTGT
GTACGGTTAGGTATGGAGTCGTGGGTTTTCTTTGTGAATTATCGTAAGTA
TCATCAATTCCCATGTCGATTGATTAAGAAACCATTACCTAGTATGAAAT
TTTCAAAAGTGAACTTCACGGTACCGAGAGAAGGAAATGAAATTCAAAAA
CATTTTTATCCAGAAGACTGGTGGGTTGAAAGTAAACCATCTGGTTGTTG
ATGATGTTGATGAAACATTCAGAAACATTCTACGATTTTAGCTTCTTGAT
TTTTCAATGAATTTAAGACTTGAAAATGTTCAAGTATCATATGCCGGAGC
AACACTGTTGTTATTCCGTTGTTGCTAGATTTAGTTAGTTTATATTAAGT
NCGGAGTAACACTGTTGTTATTCCGTTGTTGCTAGATTTAGTTAGTTTAT
ATTAAGTCCGAACTTGATTTTTCAAAATGTGAAATGAATGATTCTCTGAT
ATAATATTTGGGCGAATATTAAACGTCGTCGAGTCAAAGCACATTTAAGG
GCTCTGACCATAGTCGAAAAATTGATTTTAGTATTTGAACATAAAAGTTA
TGTTTAACACTTTTAACAAAGAATTGCCTTTACAAATTGCTTAAGAGTAA
TTAAAAATTTAATTACAAAAATGACGCTATGAACTTTAAAAAGACGTTAA
TAATATGTTGTATTACCTTCTTTTATAAAAAGTGCTAACTTTTGATAGTT
TTTTTCAAACTGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066551-exon-scaffold_456-1575043694:445810..445999 | TCONS_00066551-exon-scaffold_456-1575043694:445810..445999 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1575043694:444427..444670 | TCONS_00066551-exon-scaffold_456-1575043694:444427..444670 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1575043694:442634..443581 | TCONS_00066551-exon-scaffold_456-1575043694:442634..443581 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1510915933:445810..445999 | TCONS_00066551-exon-scaffold_456-1510915933:445810..445999 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1510915933:444427..444670 | TCONS_00066551-exon-scaffold_456-1510915933:444427..444670 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1510915933:442634..443581 | TCONS_00066551-exon-scaffold_456-1510915933:442634..443581 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1491911889:445810..445999 | TCONS_00066551-exon-scaffold_456-1491911889:445810..445999 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1491911889:444427..444670 | TCONS_00066551-exon-scaffold_456-1491911889:444427..444670 | Clytia hemisphaerica | exon |
TCONS_00066551-exon-scaffold_456-1491911889:442634..443581 | TCONS_00066551-exon-scaffold_456-1491911889:442634..443581 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_456 | supercontig | scaffold_456:442634..445999 - |
Blast
The following BLAST results are available for this feature:
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