TCONS_00066608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066608
Unique NameTCONS_00066608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066608 ID=TCONS_00066608|Name=TCONS_00066608|organism=Clytia hemisphaerica|type=transcript|length=628bp
gccattttcattttaaagttgagattttacacgttctagctcatttgcac
agggtcgTTAAAACCCTTTGCAAATGCACCTCAGAATTTGTAATCAGAAT
AACAGAGGGGAGTAGATTGATGGTGAACTGTCCGAGATCTTTAGACAGGC
ATAAGCTATTGATTAGCAGAATAACTTACctattattcaaaaataaagtg
aaaatttCTAGACATTAGCTAAATATACCCAGATCATGAACTGGACACaa
tggtcaaaattcaaaaaaagcagaaaaagacTAGCTAATTCCAAACCAAA
TGGACCATGGTGCAtggaaaagtataaaaaatcctgatatttcaaaaact
aaaataaaactgTAGTTTCCAGATGCATACAGCTTACCATTTTGACAGAC
TGACAGAAAGAAGCACGAATATTTTTACTGTGGTGTGGTGGccataaaaa
ttaaaacttgactGGTGTGTATGGAACGCCATAGCTGCCATAAGTGCTCT
TTTTGTGCGCTCTTTTTTCATGATATTCGCTCTTTTAGTTCGCTGAACTC
TTTCGGTTCGCTCTTTtgttcgctcttttcattcgctcattcgctctttt
cattcgctcattccctcttttcattcgc
Run BLAST on NCBI

transcript from alignment at scaffold_456:331032..331659

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066608 ID=TCONS_00066608|Name=TCONS_00066608|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at scaffold_456:331032..331659 (Clytia hemisphaerica)
gcgaatgaaaagagggaatgagcgaatgaaaagagcgaatgagcgaatga
aaagagcgaacaAAAGAGCGAACCGAAAGAGTTCAGCGAACTAAAAGAGC
GAATATCATGAAAAAAGAGCGCACAAAAAGAGCACTTATGGCAGCTATGG
CGTTCCATACACACCagtcaagttttaatttttatggCCACCACACCACA
GTAAAAATATTCGTGCTTCTTTCTGTCAGTCTGTCAAAATGGTAAGCTGT
ATGCATCTGGAAACTAcagttttattttagtttttgaaatatcaggattt
tttatacttttccaTGCACCATGGTCCATTTGGTTTGGAATTAGCTAgtc
tttttctgctttttttgaattttgaccattGTGTCCAGTTCATGATCTGG
GTATATTTAGCTAATGTCTAGaaattttcactttatttttgaataatagG
TAAGTTATTCTGCTAATCAATAGCTTATGCCTGTCTAAAGATCTCGGACA
GTTCACCATCAATCTACTCCCCTCTGTTATTCTGATTACAAATTCTGAGG
TGCATTTGCAAAGGGTTTTAAcgaccctgtgcaaatgagctagaacgtgt
aaaatctcaactttaaaatgaaaatggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041657XLOC_041657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066608-exon-scaffold_456-1491911889:331032..331659TCONS_00066608-exon-scaffold_456-1491911889:331032..331659Clytia hemisphaericaexon
TCONS_00066608-exon-scaffold_456-1510915933:331032..331659TCONS_00066608-exon-scaffold_456-1510915933:331032..331659Clytia hemisphaericaexon
TCONS_00066608-exon-scaffold_456-1575043694:331032..331659TCONS_00066608-exon-scaffold_456-1575043694:331032..331659Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:331032..331659 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.508035	0.531999	0.211814	0.290044	1.94115	0.631616	0.448546	0.917219	0.332875	0.627998	0	0.400261	0.475829	0.984648	0.968873	0.919715	0.7653	1.64144	0.597181	0.3576	0.502049	0.96207	0.644122	0.0976001	0.272727	0.326914	0.879727	0.864151	2.82562	2.67471
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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