TCONS_00066619 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066619
Unique NameTCONS_00066619
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066619 ID=TCONS_00066619|Name=TCONS_00066619|organism=Clytia hemisphaerica|type=transcript|length=773bp
CAAGAAAGAAAGTATCACACATTATGCCAGAATGGATATACACTTGTGAA
GATGTTCTCTGCCAATGATCAAACCGTGCATCCTTCTTTTAATACTGATA
CCCAGAGTCCACAAACCAAAATTCATATATTCAATCGACCTAATCATAAT
GtggtattttttaatttcattttcgaATTGTTACCAACATTATCagacat
aaaacaaaagattcaaGAGACTCTTCCGATTCCAAGTGATGATTTACTGC
TCTTTGAATATGACGGTCCCTGTAGTATAGAAAGTTTGGTTCTGGAAGAA
CCTGTGAAAGCTTTGCATGTGAACAATGAACGTAAAtctgttttaaaatt
tcttttggttATTCGTGGAAACACAACAATTGGCATTGCAAGAGAACTTT
TCTTTGAAACTCTTGATGAAATAGAGATCCAAGTGCTTGGCTCACATACG
CATTTTAAGGTGGAGACGATAAGAAGATTACATTTTATTAAAACAGCAAT
TGTATCAAAACTTAATATCCCTTTGGAAAATCTAGCATTATTAACTAATG
ATGGTATAGAAGATTATGAAGATTATGAACCTATTCCTTATGATGCAAAC
GTGTCTTTAGCAGTTATAGGAGATGTACCAACAGAAACTATAAGTTGGTT
AACAGAGAATGACATTACACCGATCACAACCTTCAAGTTGAGGTTTTTGT
CAAAGATCGATTCTTTGAATATTACGGAATACCAGACAGTCAGTGCCATA
AAGGATTACAttgaaattcaata
Run BLAST on NCBI

transcript from alignment at scaffold_456:547572..548344

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066619 ID=TCONS_00066619|Name=TCONS_00066619|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at scaffold_456:547572..548344 (Clytia hemisphaerica)
tattgaatttcaaTGTAATCCTTTATGGCACTGACTGTCTGGTATTCCGT
AATATTCAAAGAATCGATCTTTGACAAAAACCTCAACTTGAAGGTTGTGA
TCGGTGTAATGTCATTCTCTGTTAACCAACTTATAGTTTCTGTTGGTACA
TCTCCTATAACTGCTAAAGACACGTTTGCATCATAAGGAATAGGTTCATA
ATCTTCATAATCTTCTATACCATCATTAGTTAATAATGCTAGATTTTCCA
AAGGGATATTAAGTTTTGATACAATTGCTGTTTTAATAAAATGTAATCTT
CTTATCGTCTCCACCTTAAAATGCGTATGTGAGCCAAGCACTTGGATCTC
TATTTCATCAAGAGTTTCAAAGAAAAGTTCTCTTGCAATGCCAATTGTTG
TGTTTCCACGAATaaccaaaagaaattttaaaacagaTTTACGTTCATTG
TTCACATGCAAAGCTTTCACAGGTTCTTCCAGAACCAAACTTTCTATACT
ACAGGGACCGTCATATTCAAAGAGCAGTAAATCATCACTTGGAATCGGAA
GAGTCTCttgaatcttttgttttatgtctGATAATGTTGGTAACAATtcg
aaaatgaaattaaaaaataccaCATTATGATTAGGTCGATTGAATATATG
AATTTTGGTTTGTGGACTCTGGGTATCAGTATTAAAAGAAGGATGCACGG
TTTGATCATTGGCAGAGAACATCTTCACAAGTGTATATCCATTCTGGCAT
AATGTGTGATACTTTCTTTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041667XLOC_041667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066619-exon-scaffold_456-1491911889:547572..548344TCONS_00066619-exon-scaffold_456-1491911889:547572..548344Clytia hemisphaericaexon
TCONS_00066619-exon-scaffold_456-1510915933:547572..548344TCONS_00066619-exon-scaffold_456-1510915933:547572..548344Clytia hemisphaericaexon
TCONS_00066619-exon-scaffold_456-1575043694:547572..548344TCONS_00066619-exon-scaffold_456-1575043694:547572..548344Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:547572..548344 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.470071	0.543508	1.42513	0.790992	0.372015	1.09025	0.33925	0.0656587	0.25492	0	0.903643	0.573493	0	0.988961	0.368329	0.638889	0.173857	0.0279891	0.231112	1.06795	0	0.222943	0	0	0.138006	0	0.321164	0.256082
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066619 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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