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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066628 ID=TCONS_00066628|Name=TCONS_00066628|organism=Clytia hemisphaerica|type=transcript|length=1184bp
GTGATATCGACCATGCTGATAATATAAATGATCACCCTTCCCTTGTAGCA
CTTGAAAAACAGCAACTTTTCGATCATCGATCATATGGACAGAACCACGG
TTGATGGCTGGAAGCCCCAATACTGAACCAATATTCATCCCAATCGATGA
AATACACACATCTTCTCGGGGGTCTTCAGGCTTCTCCCCTTCAGCATATT
TATTTGTAGCCAAATGAAACGCATACGGGTAACCATCCCATTAAAagaca
aaacactttttcttgTAAGGTACAGAGCGATAGGCGTGCTGGTACTTTGA
TCACACGATTTATGTCCTCTCGTATGTTGAGGAGCTGTATTTTGAGTGTG
TACACATGATTGTGTCCTGGTGCTTTTACATTTTCTAGATTTGACATAAA
AGACTCGACAACGGGATCTGTCGTGTTATTTCTTTCACGAGAAAGCCTTG
CCATTTTACTAGCAAAAAATTTCCCTTGTTCTcctttaaaaaatacttta
acGGACTCACGATTCCCGTCCAAGCCATCGTCACTGTTATTATCGTCATC
TGTGGTGAGGATATGTGGTGAAATAAAATGTTTCAACCAAAGAGGATAGT
CctcttcttcttcctcttcttctGAATCATCACTTTCGTCTCCTGATTCG
TCAGTGAGATAATCTTCACGTCCTGTTATCTCCTTGTACCATTTTCGGTA
ATTTAAAATGAGTTTGCCATACCAACCTCGGCTACTAATGTCTCGTATAT
CTAAAACTTTCTTCCgaaatttgatgttttcttCCTTTATACTCTGAGTA
ACCAGATAGTGTTCCATGATTTGTTTCGATGTACTCTCCTGGGTTTTTTG
TATcttttatcgaccgccggaggcggtttctttcatagtggtacgctaat
ctcgttttgccttggctcattactttgtctgccatttactttcgggtttt
ttaactagattacccaggtgtttctcttttttttctctgaatgtctttta
ttcggaattgaataatcgagacatgaaaaatgactatattgtaatttgtt
ttcaatgaataatctaaaatgtactggagatgacacgtaggcgttaataa
tgtgcgtgcgctctttcgcgagcgtgatgcgtgatggaaggcggtcgttt
cagtgtggtttagatccacactgtgacctagttt Run BLAST on NCBI protein sequence of TCONS_00066628-protein >TCONS_00066628-protein ID=TCONS_00066628-protein|Name=TCONS_00066628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MEHYLVTQSIKEENIKFRKKVLDIRDISSRGWYGKLILNYRKWYKEITGR
EDYLTDESGDESDDSEEEEEEEDYPLWLKHFISPHILTTDDDNNSDDGLD
GNRESVKVFFKGEQGKFFASKMARLSRERNNTTDPVVESFMSNLENVKAP
GHNHVYTLKIQLLNIREDINRVIKVPARLSLCTLQEKVFCLLMGWLPVCV
SFGYK Run BLAST on NCBI transcript from alignment at scaffold_456:868833..870016 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066628 ID=TCONS_00066628|Name=TCONS_00066628|organism=Clytia hemisphaerica|type=transcript|length=1184bp|location=Sequence derived from alignment at scaffold_456:868833..870016 (Clytia hemisphaerica)
aaactaggtcacagtgtggatctaaaccacactgaaacgaccgccttcca
tcacgcatcacgctcgcgaaagagcgcacgcacattattaacgcctacgt
gtcatctccagtacattttagattattcattgaaaacaaattacaatata
gtcatttttcatgtctcgattattcaattccgaataaaagacattcagag
aaaaaaaagagaaacacctgggtaatctagttaaaaaacccgaaagtaaa
tggcagacaaagtaatgagccaaggcaaaacgagattagcgtaccactat
gaaagaaaccgcctccggcggtcgataaaagATACAAAAAACCCAGGAGA
GTACATCGAAACAAATCATGGAACACTATCTGGTTACTCAGAGTATAAAG
GaagaaaacatcaaatttcGGAAGAAAGTTTTAGATATACGAGACATTAG
TAGCCGAGGTTGGTATGGCAAACTCATTTTAAATTACCGAAAATGGTACA
AGGAGATAACAGGACGTGAAGATTATCTCACTGACGAATCAGGAGACGAA
AGTGATGATTCagaagaagaggaagaagaagagGACTATCCTCTTTGGTT
GAAACATTTTATTTCACCACATATCCTCACCACAGATGACGATAATAACA
GTGACGATGGCTTGGACGGGAATCGTGAGTCCgttaaagtattttttaaa
ggAGAACAAGGGAAATTTTTTGCTAGTAAAATGGCAAGGCTTTCTCGTGA
AAGAAATAACACGACAGATCCCGTTGTCGAGTCTTTTATGTCAAATCTAG
AAAATGTAAAAGCACCAGGACACAATCATGTGTACACACTCAAAATACAG
CTCCTCAACATACGAGAGGACATAAATCGTGTGATCAAAGTACCAGCACG
CCTATCGCTCTGTACCTTAcaagaaaaagtgttttgtctTTTAATGGGAT
GGTTACCCGTATGCGTTTCATTTGGCTACAAATAAATATGCTGAAGGGGA
GAAGCCTGAAGACCCCCGAGAAGATGTGTGTATTTCATCGATTGGGATGA
ATATTGGTTCAGTATTGGGGCTTCCAGCCATCAACCGTGGTTCTGTCCAT
ATGATCGATGATCGAAAAGTTGCTGTTTTTCAAGTGCTACAAGGGAAGGG
TGATCATTTATATTATCAGCATGGTCGATATCAC Coding sequence (CDS) from alignment at scaffold_456:868833..870016 >TCONS_00066628 ID=TCONS_00066628|Name=TCONS_00066628|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_456:868833..870016 (Clytia hemisphaerica)
ATGGAACACTATCTGGTTACTCAGAGTATAAAGGaagaaaacatcaaatt
tcGGAAGAAAGTTTTAGATATACGAGACATTAGTAGCCGAGGTTGGTATG
GCAAACTCATTTTAAATTACCGAAAATGGTACAAGGAGATAACAGGACGT
GAAGATTATCTCACTGACGAATCAGGAGACGAAAGTGATGATTCagaaga
agaggaagaagaagagGACTATCCTCTTTGGTTGAAACATTTTATTTCAC
CACATATCCTCACCACAGATGACGATAATAACAGTGACGATGGCTTGGAC
GGGAATCGTGAGTCCgttaaagtattttttaaaggAGAACAAGGGAAATT
TTTTGCTAGTAAAATGGCAAGGCTTTCTCGTGAAAGAAATAACACGACAG
ATCCCGTTGTCGAGTCTTTTATGTCAAATCTAGAAAATGTAAAAGCACCA
GGACACAATCATGTGTACACACTCAAAATACAGCTCCTCAACATACGAGA
GGACATAAATCGTGTGATCAAAGTACCAGCACGCCTATCGCTCTGTACCT
TAcaagaaaaagtgttttgtctTTTAATGGGATGGTTACCCGTATGCGTT
TCATTTGGCTACAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066628-exon-scaffold_456-1491911889:868833..870016 | TCONS_00066628-exon-scaffold_456-1491911889:868833..870016 | Clytia hemisphaerica | exon |
| TCONS_00066628-exon-scaffold_456-1510915933:868833..870016 | TCONS_00066628-exon-scaffold_456-1510915933:868833..870016 | Clytia hemisphaerica | exon |
| TCONS_00066628-exon-scaffold_456-1575043694:868833..870016 | TCONS_00066628-exon-scaffold_456-1575043694:868833..870016 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:868833..870016 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024047 | MM3350-like_dom |
Blast
The following BLAST results are available for this feature:
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