TCONS_00066629 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066629
Unique Name	TCONS_00066629
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	420

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_457:82429..91563+

transcript sequence

>TCONS_00066629 ID=TCONS_00066629|Name=TCONS_00066629|organism=Clytia hemisphaerica|type=transcript|length=420bp
atcaaaaatacggggcatattttaaggcttcaatttttcttgcctgagaa
aggtttagagattgacctctaacTCAATGCCCCGGGGGATATGTCTACCC
CGTGCATTTCCGCTGTTTTTATTAAACTGTTGGGACTCGATAAGTCAAGA
GACGGACAGTTTAAATAAGAGCGGTAAATTTTGGTTTGGAGAAGGCTTGC
TTTGCTGcgattttattcattttattcatcatcataaccagccATGCAAC
ATAAATGCAGCAGTGTCAGGGTTCCATGTATCTAGCCAGTAGCCATCACT
ACAAAGAGGACAAAACAATCAGTTGGCGAGGAAATGCCGCATTCGAAATA
AACTTAAATGAATGTGATGGGAAGTGGAAAGTAGCAGCTATCACTCAATG
ATCCGTTCATCAATCACCNN

Run BLAST on NCBI

transcript from alignment at scaffold_457:82429..91563+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066629 ID=TCONS_00066629|Name=TCONS_00066629|organism=Clytia hemisphaerica|type=transcript|length=9135bp|location=Sequence derived from alignment at scaffold_457:82429..91563+ (Clytia hemisphaerica)
atcaaaaatacggggcatattttaaggcttcaatttttcttgcctgagaa
aggtttagagattgacctctaacTCAATGCCCCGGGGGATATGTCTACCC
CGTGCATTTCCGCTGTTTTTATTAAACTGTTGGGACTCGATAAGTCAAGA
GACGGACAGTTTAAATAAGAGCGGTAAATTTTGGTTTGGAGAAGGCTTGC
TTTGCTGcgattttattcattttattcatcatcataaccagccATGCAAC
ATAAATGCAGCAGTGTCAGGGTTCCATGTATCTAGCCAGTAGCCATCACT
ACAAAGAGGACAAAACAATCAGTTGGCGAGGAAATGCCGCATTCGAAATA
AACTTAAATGGTAAgagcttatttttttcttcattttaaaaaccCTGTCA
AGAGTTGAGACAATCTCGATCTCTGTCAATCGAGCGGAATCAATATCGAA
CATGCAATCGACAGTCCAGCTCACTACAGTATGCGATTGggccattctat
ttttaaaccatacaggcTCCCCAGCAGTTTGCANACAGTATGCGATTGgg
ccattctatttttaaaccatacaggcTCCCCAGCAgtttgcatgaatgcg
tgaaaattgaaaaaacttgtgtGAATATGAAAATCTActttttgattgca
tgaatAGACGTTATCTACAGACGATAACTAATCAAAACGGGGAGAAGACA
AACCGTGGACCCCCGATATGgacccccaatatggaccccaatatggacca
ccAATATGGACCCCTAATGGACCCCCTTTAAATGGCGAGAAAAGCATTGT
GGGTATTTCCCAACATTAAATAGGTAGTTATTTGTGCTATATTAGTCGTT
CTATATACTATAAACATATTACAACAGTTATAGAGTTACATGATACATTC
TGTTATTTAGACATAAATTCAGTTCGTTCAGGGTGATTTGTTCTATTGTT
AAAATGTTGACATAATGttgatatttgagaaaaatattgacagaatcata
aaatatgacgTCTCTTaagacaaaaacattcaaaatattaTACCGAAagt
gatgtagatagtgtgaatggatataaaaagacaccaatcagaagcttgtg
actTCTCAGAGAGGGTTGTTTTAGAGTGACAAGCTTGACCAGATAGTTTA
TTGTTATTTTCATGACAAAATGACATTTGctaatcaaaataatattgaat
tcTTTAAATATGACATCTGTTAAGACAAAATCACNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNTTAATTTTCTTCCTATTTtgtctttgc
cgacctaaacaagctacttaggacggctttgccgacctaaaatgacctct
aggtcagcaaaattttgccggcctATGGCCGGTTTTGGTCGGCACTTAAG
TGCCGAtatgattttgtctgaattcacaGGGCTGAAATGTATTCATAAGA
GCGAGTGAGTCAAGGTTATGAAATACGAGGGAGTATGTCATTTACAATGA
AAAAACTGtatgaaaacaattttgcttaTAATGAGTATTTCGGCTTCCAT
AAAACGTTTTGGACTGGTTGTATCAGCCTGGACCGGTCCATATCGACCTA
GATCTGTCTTACATTGGCCgaatatcattgtttttattttaacagttttg
taaCTTGACAAAACTGGACCTGGTCATTATTGGCCGAGAcagacagataa
aaaaattaactccattaagaattagtgaaaagtttaagtttaagcaaata
aaaacaaaaaagaatggTAGATGCTGTGAAATCCAGCAAAGACAGCACAA
ACAGGGTTGTGATCAACCTGGCACTCTTGAGAANAAAAAATtaactccat
taagaattagtgaaaagtttaagtttaagcaaataaaaacaaaaaagaat
ggTAGATGCTGTGAAATCCAGCAAAGACAGCACAGACAGGGTTGTGATCA
ACCTGGCACTCTTGAGAAGTGTGAAGCTCCTTGTTGGTGcaggggggggt
cagtgtaccagaaggtggcatgtatcctggggtgggaaggtgtttgagaa
aaaaatttgtcatgtactacctgtgtactataattggggtgttgggtcca
aaatcgaatttgttttttattacctgtgtaccaaaataagGGTGTTGGGT
CCAGAATCGATGTTAAAAGtgtggaaacaaaaaggttcagaaattatctg
ctaaaatagaaatgtaaagttgttctattataaattgatcaagccaagtt
tgtccaagatcattcttccaaaattcttaaaatgaatagcataccgcagt
gaatctaaaaatagacattgatttttctgtttgaccgaaattcaatccca
tccaGTCCCATCACCCTTCGCGTTAACTACGCCTGCATGCAAATTACACT
CaactacaaagaaaaagtaatgactttcacgactttttaaTTAAGANCTA
CTAGATCCCACTGAAATACTCATgcatttccacatggtctcgcgtaactt
ttgaaaagtttgttttctcacgcattttggatttttgataaaattttcct
gtttttccgatttttggaaaaaagttttcccaaatACCCGAGTTCCTGAT
TTTCTGAGAAAGGGTTTTCCCGAGCtcccaatttttggaaaaatgtttct
ttattttccGGATTTTTCTAGGTAGTGCCCGGTAATAAATGGGGGGCATG
Tgatagttttgttttttttccaggtactacccggtagtaaataggggtat
ggggtggtttttggatttttccatgtagtattgtgtacttcaggggtggg
tgggtgtcaagttttgaaaaNgttttgggatttttccatgtagtattgtg
tacttcaggggtgggtgggtgtcaagttttgaaaaataccttgtagtaca
catacatgccACCTTCTAGTACACCGACCCCCCCTGGTTGGTGTTGTTGG
AATCCAGCAGAAACATTCGAAGCGTTGAAGACTTTGGATCCAACTGGAAT
TGGACATCTTCCATGACAATTACTTCAAAAATTGCAGACTTGAGGTCTTG
GCAAATAACCTTGGACCAGCTGTACGCCTGGTTTGGAATCGGCGTGCAGC
TGAGCAGGTACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NAAAAATAATCACACAGAATGGCACTGATGTCCTTATACATAGGATCAGA
AACACATCTATCTTGTAATATCTTCAACAAGAAATTCCTACCGAAACATT
ACACTGCTTCGCGCCAGGACAGAACTGATGGCAAAGGAGGTATTATCATC
ATTTACAAAGAAAGCTTGATAGTCAAAGTAATCACGTCGAAAGCAGGAGA
AATTGTATCCattaagataaaaacatttgaaaaacctATTTTAATCACAG
CATGTTATCGTACGATGTATAATTCCAAAGAGCAGAACCAGGAACTAATT
GACAGTTTGAGAAAGATAATAGTAAAACACAAAAACATATCTGTGTGGGT
TGGTGGTGACTTTAACCTACCAGACATTGATTGGCATTCAAGTGAAATCG
GCGTCCACCAAGTATGTAAAAGAACTATGAATAtgctatcttttttgaaa
ataaccttGACAATGAATCAATaataaactttgaaataaacCAAGTACTC
TCACCTCAAGAAGATGATGAAAGTTGACCGTTGAGACTGATCGAGATCCT
CTTGCTTCTTGTCCATGAGTGTCATGAGATTTGAAACAACTTAGCCAGCT
ACTAGTGCGAATCAGCTTTAACATTTAATAAAATAGTTCACAGTACGCTT
CGGAAGAGGTGGCGCAATATAAGGGAGATAACGGCTGATGTAATAATTAA
AGCGCAGCTCGGCGCATACAAATTCTTGTTTCGGATTTTCTAAGTCAAAT
CGGGAAAATCGGAATTAGACTGAGGAGTCTTAACGATGACGACgaccagc
gggaaaaaaatcgcggaacagatttgaagggtcaccagGGCTGACCAATA
ATCTcgttaaaaacttaaaaaagacgtagagaaaaattaaattttacttt
ACCATACTACTTCTAACGAAgtttaaagtcacccatagcatttagctatc
atcttctttcttttttataaaattctcaaaagaaaacttaaaattaaaGC
AAGCTGGGGGTTTATATCTAATTGAGTTGTTCATCTTCGATTTACAGGTA
ACTGAAAAAAATCGCatttcaatttacttttgaagttaaagtcagaaaaa
tttaaaacttaaatttttaacattagaaagaaaaaaactacTAGCTCAGA
AAATTTATACTTTTGaggtataaaaatttgttgaccaattaaagagaatg
tgtcaagaaggATGTACACATACTTAAAATACCTAAAGACCAGTCTAGTT
TCAGGTACCTGAAGCAACAAGCTCAATGTCATCAACAGGAAAATTGATAT
ATTAccctttgtttttataatttaGAATGTGATGGGAAGTGGAAAGTAGC
AGCTATCACTCAATGATCCGTTCATCAATCACCNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041677	XLOC_041677	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066629-exon-scaffold_457-1491911889:82429..82788	TCONS_00066629-exon-scaffold_457-1491911889:82429..82788	Clytia hemisphaerica	exon
TCONS_00066629-exon-scaffold_457-1510915933:82429..82788	TCONS_00066629-exon-scaffold_457-1510915933:82429..82788	Clytia hemisphaerica	exon
TCONS_00066629-exon-scaffold_457-1575043694:82429..82788	TCONS_00066629-exon-scaffold_457-1575043694:82429..82788	Clytia hemisphaerica	exon
TCONS_00066629-exon-scaffold_457-1491911889:91504..91563	TCONS_00066629-exon-scaffold_457-1491911889:91504..91563	Clytia hemisphaerica	exon
TCONS_00066629-exon-scaffold_457-1510915933:91504..91563	TCONS_00066629-exon-scaffold_457-1510915933:91504..91563	Clytia hemisphaerica	exon
TCONS_00066629-exon-scaffold_457-1575043694:91504..91563	TCONS_00066629-exon-scaffold_457-1575043694:91504..91563	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_457	supercontig	scaffold_457:82429..91563 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
98.659	92.5401	45.0791	39.419	36.9469	36.1919	26.366	24.8892	11.9674	14.2601	8.73146	9.36234	8.9864	7.1724	6.23107	5.7611	9.88322	9.73527	4.36284	4.88795	4.72885	4.24639	93.5399	76.8852	40.4328	28.4984	9.09701	10.017	35.2033	47.8251

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00066629 vs. Swiss-Prot (Human)

BLAST of TCONS_00066629 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00066629 (transcript) - C. hemisphaerica