TCONS_00066630 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066630
Unique Name	TCONS_00066630
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	898

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_457:194298..205412+

transcript sequence

>TCONS_00066630 ID=TCONS_00066630|Name=TCONS_00066630|organism=Clytia hemisphaerica|type=transcript|length=898bp
cgtctttccaaacaaattttttttcaccgtCTCTGGCCCTCTGGCCTTTT
CTTTACTGATCGTTTGAAGGTTTCACCTGCTGCGCAAAGGCACTGATTAT
TGGGTGGAATAAGTAtagatattttattttatcaaactCAGTAAATGACC
TGGCCAGACCTGgcactcggGTAGAGGACAACAATATATACTGCATGATG
TCAGCGGAGGAATCTACAACTGAATTCTTACTGCATTCCAATCAGTTTAA
ACTTAAATCAATAATGCCAGAATGCCGAAGGTGTCACAGCAAATTCATTC
AAATGATAATGCCATTAATGATAACACTAATTGGAACCATAATAGTGTTT
GTTGGTGGGCTGACGAGACTCTACAAAACAGATATTAGGCTTGCTATTGG
TATCATGCTGATATTTTTCAACATTATTACATTCTTTGTATTTGGTCTTG
ATAAATGTTGCGCTAGAAATGAAGGATCAAGGGTTGCAGAAATGGTGTTG
TTTTACATGACCTTTTTTGGAAGTCCCGTTGGTGCTGTTCTTGGAATGCT
TTTCTTTAGACACAAAACAGCAAAAAGGGAGTTTATTTGTGTCATTGTTC
TATTGTGCTTCTTTAATTTGCTTTGGCTTTTTGTCTATTTCGTGGCTACA
GCCAAGACAAGCCTCTCTGCTGCATATAGGAGCTAACTTTGATTATGCTA
CTGAGGAACTATAGTTagcaaaattttcttcatttgaaatattttgcaag
TTCTCTCGCATTTTCTCAAGTTaaacaattttatttcaaaatttgtgtga
ttttttttgtggtGATTTTTAAACTACAAGAGATAGAATTAAGGTGAAAA
TAATGTAAATAAGCATAATCTCATAATTGCAATCATTTTTAATTGTAT

Run BLAST on NCBI

transcript from alignment at scaffold_457:194298..205412+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066630 ID=TCONS_00066630|Name=TCONS_00066630|organism=Clytia hemisphaerica|type=transcript|length=11115bp|location=Sequence derived from alignment at scaffold_457:194298..205412+ (Clytia hemisphaerica)
cgtctttccaaacaaattttttttcaccgtCTCTGGCCCTCTGGCCTTTT
CTTTACTGATCGTTTGAAGGTTTCACCTGCTGCGCAAAGGCACTGATTAT
TGGGTGGAATAAGTAtagatattttattttatcaaactCAGTAAATGACC
TGGCCAGACCTGgcactcgggtaagttatggcatatgtctcaaaaactga
aaattacaataatttttagatcgaaTTTGGGGgtgcccagtgcacgaacg
gcaaacttatttttctcttttctcacttacttttggtttttacataaatc
ctttttgaccatctcgtaaacaagcttgaagtccttctttcagtttgttt
tcactATATATATTTGAAGGCTTCTTTTCTTGTCTTAGAATAATAAGTCG
TTAAGGCTGATGGAAATTAATGATATGTTTACCGTAATGacgattttcag
aatttgatgcggccaagttttcattattcattattcattattttcccata
aaCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTC
ATTTCATTCTTTAACATATATCGAATATTTTTAGGAACAAGGATTTCAat
gcaaatttaaaataaactataaatAAACTACTATGAAAcacaatttacaa
aaaaattatttaaaaaattgtagaaaccatttttaatggaaaatatatta
aaaaggaACAATTTTAGATTTCATCAAATATTGCATGATTGGAAGTTTAC
ATTTGTCCtgtctttgtttttcaaaatatcgaagatctgttttacttttt
catatgcaggaaaattaaatttagatgCTCCTCTTAAAGGATTGATGACT
TCTAGAGGCCCACATATTACATCAGTCAATTCAAAGGTTGACTCGTCAGG
TGGTAGATGGGAAGGTGTGTATTCCAAAACAGTGCCAGATCCAAATTTCG
GTTTGAGTAATCTCATCACAACATTAGTTACATCGCCATCCATATCATAA
AGAAAGCGAGAGACAAACTTTGTGATGAAGAgtgtttcagattttttgcc
ttTGCAGCAGACACCAAACCAATGAGACTAGCCTTCTGTATTTGGAGGGC
TTAGTCTTTTCCAAGTTGATTTCATTGTGGCAATTTCGTCTTCTTCCTCC
AGCTCTTCATCAGCAGTAGACCTAGCATCAGCCTTATNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatcatcatcatcatc
aatgtcAGAAAAGAAGTCTTCATGTCTTGATAACTTAACTTTAGCCATAT
AATAGCTTGCCAATACCTTTCTTACCCTTACCTTTTTGCCCAACTTAATG
TCttactttattactttttgataaaacctaatttttacttttattaaaTC
AAACTAGTCCAAATTTACACACAGTCTAACTAATCATTTACAATATGGCT
TTTCTAGGTAGTTCAAAGCAATAGGAAAGGGTGGCTTTTAATCAAACTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTA
AATTTCACGTACATTCTGAGGGGCAAACACCTGTAGATACACAATCTCCT
CTTGTGTCTCCGGAACTctcgtgtttttattgaatctTTTGGTTCCCGTT
TGTACGAGCTTAAAgagataaatctttttcttcccgCTAGAGAATTATAT
ACGTAATGTTATCTCCAcaatatgacaaaattaaattcacacgGTAAAGA
CTACTAGAGGGCCGTTCGGGTTGTTAACAATCTAAAAAAGCcacgggccg
tttgttttgatatcaacTTTGAAAACTTTTGTTCTCTGCTCAAGTGGgag
gaaaaataatgacaactttactagaaaatggcaaataatgacaactttac
tagaaaatggcaaataatgacaacttgatGCGGCAGGTTTTTGAACACGC
GGGCAGCTTACAGTAGACATAACATTAAATTCCATCGGCCTAAAGCGAGC
GCTATTCAGACACAGTCCGCGATTGAACGAGGAACCAGAAAAAATTAGAG
CTTCGCTCGCAGGTACTACTTTAACTCACTAACTCTTCAAAACCACgtgc
tttttcactaaaaaagcgtcttttttataagaactttagcgttttactaa
cctgtttatttttgtaaatattttcttgtcgtccatttttttgttttctt
tttcgagTTTTGCTCATTGCAAAGCGCAGCAAggggtcttcgacaaaaaa
ctttcgaattttttatcggcattgggccgataagcttCACACAaatgttt
caaccggtattccaacgaagccatattttggtttgtacagaaatttcgcc
cgctcaaatcaaaacaacaaaatggtcaaactcactaaagcaaaacattg
ccgccatggcatttccctggataaaaattctggtcacgtgaccatccgtg
attttagaccaatgaaaacgcttcatttccccggatcaaagttgtgtcta
cactaacacgcgggaactAGCTAGAAAGCTAGAAAAAAAActgggggtca
aattaaatttttctaccttcttgcggcaaacataaaaaaGAGAGCCAATT
TATTTAAGAAAtaggtgttatatcataaataaattatgtaagtaagtgat
attttaagtaatatatttaagttcattaacaattttattttgaagtttgt
ttttaaaaacaaaacccccgtgctagatgataatttcattttcttaactt
atggacccatttggaagtatttttgtaatacagatcatttggcagtgtag
taccgtaagttggtctaatctcgacatacgtcttccAATCTCGACActgg
atctgtaaaataatcaaaacaaaccttgaatgaaattcttggtatcattc
ttatcaaacaagttcatccatcaaactagaagttcaataaacattgccat
cctttcaattaaaaaaacagccaaattataagcagttttacacaacacgc
gaaacgcatgcaaacttcctcgtaactttctcaaGTCCATCATTAAagtt
ttacaactttattacacttcaagtcacgtgataaaaataatttgcgcgct
tagtcgacctggtttctatttccttattatttattgcaagcacacgctct
aggcgctaggaggccacgttaaacttctaggcgccgcacctagcacaccc
ggtcccttttcaaattcataaggaaaccgggttcttttaattattttcgg
gtcacggtaaaaaggtctactaaaaaattcctcacatgcaaaatgttgtt
gtgatttgggcatcttcgttgttagcatgctaattagtttttagtgatta
ctacatcgttaaagtgttcttttcaaatataagtaataacagttcacatt
tctcatattatattaacaatctatgacgtgatagagagagagagtacaat
ttagtgattgattgataactttggtatgtatttgtttatgtttgattttt
tatttcgaagaccagcctacagctatgtcgNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG
tagcagcctatacaagaattggaatctaaagtctgaagtcgtaactcctt
gccagtgaccccgcagagaaatttttagtcggcagacactgactttaggN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccatt
ttgaatttagattttttttctccggtactcggcaatttagaggttgttcg
taatacacGATTTGGcgtacgcgtaacacttgtgttcagaccccctcccc
ccttgctcttatcggccaaaattttcgaaaccaatttttacatcttcgaa
aacacaattttttccaatcatGTCCGCCATCGCGTTGATCTTGCCTTCCC
ACCCGTCTTTGTTGAGTTTTTGTCTATTTGCACCAGTattgagtttgttc
ataccTGCATTGGtattgttaatcaaaacgaaagttaaaaagacGCGATG
AAGTCGCAACATTTCGAAGGAAATGGCAGCAcgctggccaatgaaaaaag
agtttttttatcaaagctaatTCAAAACTGTATTTTTAAAGTTGCAAATT
TGTGTGCgaaggtgaaagcaagtgaaattgTATGCTTTCAGTTGAGTTTG
TGgacaaaatcagaaagaaattggctgaaaaaattttcgtcccaatactt
gtttttttatcggtatgtagTTGGACCCCCCTCCCACCCCCTTATAGGCC
CAATGCtgataaaaaattctaaagttTTTTGTCGAGGATCCCAAtgtagt
ttcttcttttttaaagggACCCTtcgcttaaaaatgataacaagacaCTC
ACTTGATAATCATATGAAAAGCTACTTTCCGAGTGTGTTCGAACTGTCTA
GAATCCGCGCTCTCCTCCCAAGAAAAACCTTTTGCTTGGAGTCGAGTTGC
AGGTTTATGGTTAATCGATGTCGGCTTCAGAACTCCCAATGAGCCCCGGT
TGTGTTGGTTTAAGTCAGACGGAGACGCCATACTGTTTTCAGAGGAGTTT
TTCGATATCTCTACAGGAACTAGCAGTAAGTTTTAAGTTCTTTGGATATG
TTGTTAGGGGTTTTTGGACCAATATAGTTTCATTTCCTAAAGATCACAaa
caagcgaggggtcccttttAATTAAGTTCATTCATCCAAGAAGTTTAATG
TTACTTCGCCATGTTTGTTTTTGATTGATCGCTCTGGCTGTTTCAAAAAC
CATAACAAACGAACCAATGTTTATGCCTCGGGTCCTCTTTGTTTGACGGC
CCACATGACCCACAAATTCTTGTAGACTGCCGGTTTTTTCTGTCGCTTTA
TATTACGGAGATGAAAAATTCCGGGATTCTTGGggaaaaaaagtttagaa
attatctccgttatttTTTTAATGTAAACTATGCGAGCAgtaggccaggc
ccaattgatagtttggttTGTGTCCTCTGACCAGCTCTAAACTTTTGCAT
CCATTGAAGTATGGAGTATTTAGTTATGCAATAGAACTTTCCTAAAGGAG
TATTTTTTTTAGTCTATGTCTCAAAATTCTGGTAATTTCTCATAAGTTAC
TTTCATTATTGAAAGcttcaaataaaatatttattagaAGGGTAGAATTT
TTAATTGTTTAATGTCTGTTTCAACCAATGACATTGCTGGCTATGATGAA
GGTTTACTACTGGCCCTAATTTTTGGCGCTAATGGCTTTTGGCACTTTGG
ATGACAAGCTGTCTTATAACTTTTGTTTCAATAGTTGGTGTTATTAAGGG
TTGAATGTTTTCTTCTCTTTAGTTCTCAAACAAAAGCAGGAATTTAATGC
TAGTGTTTGATTTTTAAAGTATCCTTTCTGATTGGACGAAAGCAACCTTC
ATTTGATTGGATACAATTGCACAGCaactttttgattgaaaaaaaataaa
ataggtAATCAATATTGCAGTGATTTgataataaaatatttaaaatgcgT
TCACAAGTGTCTGGGATTGATCAAATTAAACAATTTAAATATTCTCCAGG
GGGTGAATTCTAGTTTTCCTTCTATTCTCCATATTTGCCAACATACAAAA
GctcatgaaaaatttcaaaattgaacgttttttttaggttttgattTACC
ACACCTCTGGAAATTAGGAACTTTTTGgcaaaaaggtttttgaaacattt
tgtaaaatattctttttttttctttttttattgattttagcTGATGATTG
TCGTCCATACAGGcggcatgaaacttaaagttctaaattaataattaata
gtctctttcttttaacttaaaacattcttttaaaTACATATTTAAAGGTA
GAGGACAACAATATATACTGCATGATGTCAGCGGAGGAATCTACAACTGA
ATTCTTACTGCATTCCAATCAGGTACAATGATTGATATTCCGTatcttat
ttcatttttttgcacTTTATTTAGATTTCATTATCTTTCAGTTACTGAGA
TTTGAAAATTATAGGAAAGATAACTAATTTAAATATAAAGTGATTACGTG
TTATATCTGCCATTGtagaaaagaaaagtattggTATAGaaaatgtatgt
atgtatgtatattGCACCATTATAATTATGATGGTTGTTAGCATAATGTT
CATGACacttatttttgtattttgatattcatggctccgactggggttct
aggtccccccgccaaatttaggtcccccctgagaacaaggtcccccccag
cctgataaaattttaggtcccagtataggggaaacattttatggcattca
caaagctctatttacatgtgtgtgcactttCAGAGAATGCAATAgattgt
cttcatttttgcattttaaggatcagatcacactttgcatgaaaacataa
aggtttagttagagaaattaaaaaccaacagtaaagaaaaatatttagga
agtgtTATTTAGCCCCCAGAGTTACATTAACTAATGCAGGTCCCCCCCAA
GATAGAGCTCCCCCCGCCTGTCAGGAAAAACAAGCAGCTCCCATCTCTTA
TATGGAAAATTTTAGGTGTAGCTCCCCCTGCTcaggcggggggggggggg
gagccATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGGGGGGGGGCTGAACTATCAGAAACTTTGAGAAATGAA
AATTAACAATGATGTCTTCAAATATATTCTAAAATTGGCTATACATTTCT
TTTGCCCTAGAAGCCTCATTCTAAACAATTTCTAGCCAACTTTAGTTAAT
TAAACTGAGCCACTTAATCTTCATGAAAGCATAACATTTCAGCAAACCTT
GTCTGTTGTTTTTAAACTCAGATAATGTATATGTTTGTTACATTTTTGTA
AACGTGTGTTGTTTTTTGTGTTTCATCTTGTATAATTTTATTCTGCACTT
GTCCATTATAGTTACACTTACTTTCAAAGATCATGACTAAACTTTTGATT
TTGGTTTCATTTTATCATATTATCATAATGTCGCTATACTTTAAAGATTG
TCATTAGTGTAGTAATTGATTGTAAATAAAGTAAAGTAAAACTGCACATA
CATGCACATTTAAATTAAATTCTTGTTTACAATACTATTtcttattcaac
tttttgtttcAGTTTAAACTTAAATCAATAATGCCAGAATGCCGAAGGTG
TCACAGCAAATTCATTCAAATGATAATGCCATTAATGATAACACTAATTG
GAACCATAATAGTGTTTGTTGGTGGGCTGACGAGACTCTACAAAACAGAT
ATTAGGCTTGCTATTGGTATCATGCTGATATTTTTCAACATTATTACATT
CTTTGTATTTGGTCTTGATAAATGTTGCGCTAGAAATGAAGGATCAAGGG
TTGCAGAAATGGTGTTGTTTTACATGACCTTTTTTGGAAGTCCCGTTGGT
GCTGTTCTTGGAATGCTTTTCTTTAGACACAAAACAGCAAAAAGGGAGTT
TATTTGTGTCATTGTTCTATTGTGCTTCTTTAATTTGCTTTGGCTTTTTG
TCTATTTCGTGGCTACAGCCAAGACAAGCCTCTCTGCTGCATATAGGAGC
TAACTTTGATTATGCTACTGAGGAACTATAGTTagcaaaattttcttcat
ttgaaatattttgcaagTTCTCTCGCATTTTCTCAAGTTaaacaatttta
tttcaaaatttgtgtgattttttttgtggtGATTTTTAAACTACAAGAGA
TAGAATTAAGGTGAAAATAATGTAAATAAGCATAATCTCATAATTGCAAT
CATTTTTAATTGTAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041678	XLOC_041678	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066630-exon-scaffold_457-1491911889:194298..194467	TCONS_00066630-exon-scaffold_457-1491911889:194298..194467	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1510915933:194298..194467	TCONS_00066630-exon-scaffold_457-1510915933:194298..194467	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1575043694:194298..194467	TCONS_00066630-exon-scaffold_457-1575043694:194298..194467	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1491911889:203245..203319	TCONS_00066630-exon-scaffold_457-1491911889:203245..203319	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1510915933:203245..203319	TCONS_00066630-exon-scaffold_457-1510915933:203245..203319	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1575043694:203245..203319	TCONS_00066630-exon-scaffold_457-1575043694:203245..203319	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1491911889:204760..205412	TCONS_00066630-exon-scaffold_457-1491911889:204760..205412	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1510915933:204760..205412	TCONS_00066630-exon-scaffold_457-1510915933:204760..205412	Clytia hemisphaerica	exon
TCONS_00066630-exon-scaffold_457-1575043694:204760..205412	TCONS_00066630-exon-scaffold_457-1575043694:204760..205412	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_457	supercontig	scaffold_457:194298..205412 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.11427	1.95533	3.56561	3.8305	0	3.43709	2.76749e-08	3.32468e-09	2.42115	4.9594	1.27055	2.69299	2.65833	4.33163	2.87621	3.54894	4.01498	4.71336	2.30333	2.22727	4.62111	5.90644	3.06557	3.38961	5.01307e-09	4.44226e-09	2.94561	5.21278	4.38178	3.59654

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00066630 vs. Swiss-Prot (Human)

BLAST of TCONS_00066630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00066630 (transcript) - C. hemisphaerica