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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066634 ID=TCONS_00066634|Name=TCONS_00066634|organism=Clytia hemisphaerica|type=transcript|length=887bp
TAAACAATTTAAATATTCTCCAGGGGGTGAATTCTAGTTTTCCTTCTATT
CTCCATATTTGCCAACATACAAAAGctcatgaaaaatttcaaaattgaac
gttttttttaggttttgattTACCACACCTCTGGAAATTAGGAACTTTTT
GgcaaaaagGTAGAGGACAACAATATATACTGCATGATGTCAGCGGAGGA
ATCTACAACTGAATTCTTACTGCATTCCAATCAGTTTAAACTTAAATCAA
TAATGCCAGAATGCCGAAGGTGTCACAGCAAATTCATTCAAATGATAATG
CCATTAATGATAACACTAATTGGAACCATAATAGTGTTTGTTGGTGGGCT
GACGAGACTCTACAAAACAGATATTAGGCTTGCTATTGGTATCATGCTGA
TATTTTTCAACATTATTACATTCTTTGTATTTGGTCTTGATAAATGTTGC
GCTAGAAATGAAGGATCAAGGGTTGCAGAAATGGTGTTGTTTTACATGAC
CTTTTTTGGAAGTCCCGTTGGTGCTGTTCTTGGAATGCTTTTCTTTAGAC
ACAAAACAGCAAAAAGGGAGTTTATTTGTGTCATTGTTCTATTGTGCTTC
TTTAATTTGCTTTGGCTTTTTGTCTATTTCGTGGCTACAGCCAAGACAAG
CCTCTCTGCTGCATATAGGAGCTAACTTTGATTATGCTACTGAGGAACTA
TAGTTagcaaaattttcttcatttgaaatattttgcaagTTCTCTCGCAT
TTTCTCAAGTTaaacaattttatttcaaaatttgtgtgattttttttgtg
gtGATTTTTAAACTACAAGAGATAGAATTAAGGTGAAAATAATGTAAATA
AGCATAATCTCATAATTGCAATCATTTTTAATTGTAT Run BLAST on NCBI transcript from alignment at scaffold_457:202924..205412+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066634 ID=TCONS_00066634|Name=TCONS_00066634|organism=Clytia hemisphaerica|type=transcript|length=2489bp|location=Sequence derived from alignment at scaffold_457:202924..205412+ (Clytia hemisphaerica)
TAAACAATTTAAATATTCTCCAGGGGGTGAATTCTAGTTTTCCTTCTATT
CTCCATATTTGCCAACATACAAAAGctcatgaaaaatttcaaaattgaac
gttttttttaggttttgattTACCACACCTCTGGAAATTAGGAACTTTTT
Ggcaaaaaggtttttgaaacattttgtaaaatattctttttttttctttt
tttattgattttagcTGATGATTGTCGTCCATACAGGcggcatgaaactt
aaagttctaaattaataattaatagtctctttcttttaacttaaaacatt
cttttaaaTACATATTTAAAGGTAGAGGACAACAATATATACTGCATGAT
GTCAGCGGAGGAATCTACAACTGAATTCTTACTGCATTCCAATCAGGTAC
AATGATTGATATTCCGTatcttatttcatttttttgcacTTTATTTAGAT
TTCATTATCTTTCAGTTACTGAGATTTGAAAATTATAGGAAAGATAACTA
ATTTAAATATAAAGTGATTACGTGTTATATCTGCCATTGtagaaaagaaa
agtattggTATAGaaaatgtatgtatgtatgtatattGCACCATTATAAT
TATGATGGTTGTTAGCATAATGTTCATGACacttatttttgtattttgat
attcatggctccgactggggttctaggtccccccgccaaatttaggtccc
ccctgagaacaaggtcccccccagcctgataaaattttaggtcccagtat
aggggaaacattttatggcattcacaaagctctatttacatgtgtgtgca
ctttCAGAGAATGCAATAgattgtcttcatttttgcattttaaggatcag
atcacactttgcatgaaaacataaaggtttagttagagaaattaaaaacc
aacagtaaagaaaaatatttaggaagtgtTATTTAGCCCCCAGAGTTACA
TTAACTAATGCAGGTCCCCCCCAAGATAGAGCTCCCCCCGCCTGTCAGGA
AAAACAAGCAGCTCCCATCTCTTATATGGAAAATTTTAGGTGTAGCTCCC
CCTGCTcaggcggggggggggggggagccATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGGGGGCTGAA
CTATCAGAAACTTTGAGAAATGAAAATTAACAATGATGTCTTCAAATATA
TTCTAAAATTGGCTATACATTTCTTTTGCCCTAGAAGCCTCATTCTAAAC
AATTTCTAGCCAACTTTAGTTAATTAAACTGAGCCACTTAATCTTCATGA
AAGCATAACATTTCAGCAAACCTTGTCTGTTGTTTTTAAACTCAGATAAT
GTATATGTTTGTTACATTTTTGTAAACGTGTGTTGTTTTTTGTGTTTCAT
CTTGTATAATTTTATTCTGCACTTGTCCATTATAGTTACACTTACTTTCA
AAGATCATGACTAAACTTTTGATTTTGGTTTCATTTTATCATATTATCAT
AATGTCGCTATACTTTAAAGATTGTCATTAGTGTAGTAATTGATTGTAAA
TAAAGTAAAGTAAAACTGCACATACATGCACATTTAAATTAAATTCTTGT
TTACAATACTATTtcttattcaactttttgtttcAGTTTAAACTTAAATC
AATAATGCCAGAATGCCGAAGGTGTCACAGCAAATTCATTCAAATGATAA
TGCCATTAATGATAACACTAATTGGAACCATAATAGTGTTTGTTGGTGGG
CTGACGAGACTCTACAAAACAGATATTAGGCTTGCTATTGGTATCATGCT
GATATTTTTCAACATTATTACATTCTTTGTATTTGGTCTTGATAAATGTT
GCGCTAGAAATGAAGGATCAAGGGTTGCAGAAATGGTGTTGTTTTACATG
ACCTTTTTTGGAAGTCCCGTTGGTGCTGTTCTTGGAATGCTTTTCTTTAG
ACACAAAACAGCAAAAAGGGAGTTTATTTGTGTCATTGTTCTATTGTGCT
TCTTTAATTTGCTTTGGCTTTTTGTCTATTTCGTGGCTACAGCCAAGACA
AGCCTCTCTGCTGCATATAGGAGCTAACTTTGATTATGCTACTGAGGAAC
TATAGTTagcaaaattttcttcatttgaaatattttgcaagTTCTCTCGC
ATTTTCTCAAGTTaaacaattttatttcaaaatttgtgtgattttttttg
tggtGATTTTTAAACTACAAGAGATAGAATTAAGGTGAAAATAATGTAAA
TAAGCATAATCTCATAATTGCAATCATTTTTAATTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066634-exon-scaffold_457-1491911889:202924..203082 | TCONS_00066634-exon-scaffold_457-1491911889:202924..203082 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1510915933:202924..203082 | TCONS_00066634-exon-scaffold_457-1510915933:202924..203082 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1575043694:202924..203082 | TCONS_00066634-exon-scaffold_457-1575043694:202924..203082 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1491911889:203245..203319 | TCONS_00066634-exon-scaffold_457-1491911889:203245..203319 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1510915933:203245..203319 | TCONS_00066634-exon-scaffold_457-1510915933:203245..203319 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1575043694:203245..203319 | TCONS_00066634-exon-scaffold_457-1575043694:203245..203319 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1491911889:204760..205412 | TCONS_00066634-exon-scaffold_457-1491911889:204760..205412 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1510915933:204760..205412 | TCONS_00066634-exon-scaffold_457-1510915933:204760..205412 | Clytia hemisphaerica | exon |
| TCONS_00066634-exon-scaffold_457-1575043694:204760..205412 | TCONS_00066634-exon-scaffold_457-1575043694:204760..205412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_457 | supercontig | scaffold_457:202924..205412 + |
Blast
The following BLAST results are available for this feature:
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