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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066640 ID=TCONS_00066640|Name=TCONS_00066640|organism=Clytia hemisphaerica|type=transcript|length=2745bpRun BLAST on NCBI transcript from alignment at scaffold_457:226798..236883+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066640 ID=TCONS_00066640|Name=TCONS_00066640|organism=Clytia hemisphaerica|type=transcript|length=10086bp|location=Sequence derived from alignment at scaffold_457:226798..236883+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066640 vs. Swiss-Prot (Human)
Match: NRX1A (Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.514e-17 Identity = 92/429 (21.45%), Postives = 185/429 (43.12%), Query Frame = 1
Query: 202 VTYTYPGKGFTKFPILKSSQTTKISFEFQTSSLEVERSLLYV--------DNVRGGGMEGDSMRVWLDAGRLKIAWNVVNGNYRDGDIKEVGHNLDDNIKHYVVIERFNGKHFVVRVDGVESRRSF---SKAVRFNSEVYLGGCHPDPTKRTLQRDPYFCFQN-GFIGCISGLRWSTESEEDERTFKPIETYNVTKGCTNR----CLTDPSFSCSNRGRCLNQYIKTGCDCRGTGFTGTTCQKPKLAVTFFGEQYVTWVPQTSMNSLVTNIFVRFKSNQPSGIILFITGQSTSEFMLLELYERTLVLKMKIN--GYDEKVFKIPKST----NEKAEHWQMVSFSRMGASITIAMDDG---VHEYTNSVKQLENKIVQVKFIIRKIYFGGVDKLQYGDFALRKSESKINFIGCLQNVDVNQF---DLVEN 1404
+T+ P + F P + +T ISF+F+T+ E +L+ D ++ D + + G L + ++ +G + IK + ++D ++V +R +G+ + V+ + + + S+ + + E+YLGG + + + N G++GCI L +S++ + + T V C+ CL++P C N G C + + + CDC GTG+ G +C++ +++ G ++ M++ ++ +RF+S + GI++ T + +++ + LEL + L + ++ + K P++ N W V R G S+ + +DD + +LE ++ I + Y V NFIG LQ++ N DL +N
Sbjct: 482 ITFETP-ESFISLPKWNAKKTGSISFDFRTT--EPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK---IKALLKKVNDGEWYHVDFQR-DGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSKETAKPCLSNP---CKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPS---------------NFIGHLQSLTFNGMAYIDLCKN 885 The following BLAST results are available for this feature:
BLAST of TCONS_00066640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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