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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066641 ID=TCONS_00066641|Name=TCONS_00066641|organism=Clytia hemisphaerica|type=transcript|length=1615bp
ATAGTCTCTAATATTCTTGTGTTCTTGTAGTTTTGATTGATTGTAATTCT
ACACCACTTCACTGCTATCTGAAATTCCATATTGACATTTCACAGATTAT
TTTTGACTTGATTTTTATAGATATCACAGAGCAAACATTGTAGTAGCAAA
TCTCTATATCTGCATTGATACACAAAAAGGATTTTGTGGAGTAGAATCAT
CGATTAGTTtcactttgttgttttgatcTTGCAGTTGGAATTTAACATAA
AGTGGTGAAGTCTCAATTTTCGAGGAAGTCTAACATATCTAAAAGAAATC
GTCACAAAATATTGTATTCATTAGATTGAGGATAGTAAGACATATTTGCA
ACAAAACTGTATTATCAATTCACTTAGCGACAACATAACAATTTGTTGGA
AATCAAATCTTGAAGTTCTGTAGAGAAACAAAGGAAAAACCTTATTTGAG
GAGAATGAAAATTCAACAGTAGCAGAATCAAGATTTTATTCGTCAAAGAG
TTGGTGTAAAAACTCTATAACCGAAATTCAAGTTCAAGCTTTTTGTCTTC
AACATCAACATCGTGATGAATAAAACACACTGCACTTCCACGTTTGGGAC
ATTGGCGATGCTCGGTGAGAATCAGCGAATCGGATACATGGTTGCCAACA
TCCTTATCGCCCTCGTTAACCTGGTCACCAATCTATGCGTCATTATTATC
atcataaaaacaaaacaaattaaaaaccaaTCAATAAAATTAGTTTATTA
TTTATCAATCTCAAATGTACTGTTTGCTGTAATTGGTCAACCtatttttg
ccgccattttGTATCTTGGAACTGAGGTTGGATGCACAGAAATGAGGCTG
TTGTTACTGGTTATCGAATTCTTTATGTATAGCTCGACCTATTTGACTGG
GATGCTAGGGTTTGACCGCTATATACGCATACGCTATCAAAGCACTTATA
ACAAAGTCTATTCGCGTCTTCGGTTCAACCTTAGCCTGGTTATACTTTAC
ATACTGATCGTTCTACAGGCTGGATTAGGCACAATGTCACGTTTTTTAAA
CCTGTCAGCAGTCCTGATTAATTTACCAGTTAACGTAATAATGTTTTTGA
TCGTCGCTTGCCTGTATGGGAAATCGATCCTGATTCTGCGAGAGTATGAA
CAAACCGCTAAAAGACTTTTTAAACACAAGAAGAAGGTACCATTGACTCG
ACTCGCTTCACTATACATAGCTACAGACACTATCCTATGTCTACCTTTGG
TCATAATCTTGAGTGCTTACTATTTTATACAGAAGAGCTCAATCGATTAT
GAACTAAAAGCTATCATCTTCTAcacatgttttttgtttttcttatgtCA
TTGTCCTATCAATGctgtgtgttttttgtttgttaacaAGAAAGCCAAAT
CAAGATTGGTCGGGAAAAAACGGAAATCAACGGACGCACTGAATAATAGT
TCAAGTTACAATAACCAAAATGACACAATAATCAGCAAGAGTCAATCAAG
CCCTGTACTTGACACACggatgtagtttttttaacacattttttctttag
ttctttCATTGTCAAACTATACGTAGTCAAAGAAATTGTTTCGTACAATA
TGGTGTCGTATTGAT Run BLAST on NCBI transcript from alignment at scaffold_457:238243..239934+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066641 ID=TCONS_00066641|Name=TCONS_00066641|organism=Clytia hemisphaerica|type=transcript|length=1692bp|location=Sequence derived from alignment at scaffold_457:238243..239934+ (Clytia hemisphaerica)
ATAGTCTCTAATATTCTTGTGTTCTTGTAGTTTTGATTGATTGTAATTCT
ACACCACTTCACTGCTATCTGAAATTCCATATTGACATTTCACAGATTAT
TTTTGACTTGATTTTTATAGATATCACAGAGCAAACATTGTAGTAGCAAA
TCTCTATATCTGCATTGATACACAAAAAGGATTTTGTGGAGTAGAATCAT
CGATTAGTTtcactttgttgttttgatcTTGCAGTTGGAATTTAACATAA
AGTGGTGAAGTCTCAATTTTCGAGGAAGTCTAACATATCTAAAAGAAATC
GTCACAAAATATTGTATTCATTAGATTGAGGATAGTAAGACATATTTGCA
ACAAAACTGTATTATCAATTCACTTAGCGACAACATAACAATTTGTTGGA
AATCAAATCTTGAAGTTCTGTAGAGAAACAAAGGAAAAACCTTATTTGAG
GAGAATGAAAATTCAACAGTAGCAGAATCAAGATTTTATTCGTCAAAGAG
TTGGTGTAAAAACTCTATAACCGAAATTCAAGTTCAAGCTTTTTGTCTTC
AACATCAACATCGTGATGAATAAAACACACTGCACTTCCACGTTTGGGAC
ATTGGCGATGCTCGGTGAGAATCAGCGAATCGGATACATGGTTGCCAACA
TCCTTATCGCCCTCGTTAACCTGGTCACCAATCTATGCGTCATTATTATC
atcataaaaacaaaacaaattaaaaaccaaTCAATAAAATTAGTTTATTA
TTTATCAATCTCAAATGTACTGTTTGCTGTAATTGGTCAACCtatttttg
ccgccattttGTATCTTGGAACTGAGGTTGGATGCACAGAAATGAGGCTG
TTGTTACTGGTTATNAACCTATTTTTGCCGCTATTTTGTATCTTGGAACT
GAGGTTGGATGCACAGAAATGAGGCTGTTGTTACTGGTTATCGAATTCTT
TATGTATAGCTCGACCTATTTGACTGGGATGCTAGGGTTTGACCGCTATA
TACGCATACGCTATCAAAGCACTTATAACAAAGTCTATTCGCGTCTTCGG
TTCAACCTTAGCCTGGTTATACTTTACATACTGATCGTTCTACAGGCTGG
ATTAGGCACAATGTCACGTTTTTTAAACCTGTCAGCAGTCCTGATTAATT
TACCAGTTAACGTAATAATGTTTTTGATCGTCGCTTGCCTGTATGGGAAA
TCGATCCTGATTCTGCGAGAGTATGAACAAACCGCTAAAAGACTTTTTAA
ACACAAGAAGAAGGTACCATTGACTCGACTCGCTTCACTATACATAGCTA
CAGACACTATCCTATGTCTACCTTTGGTCATAATCTTGAGTGCTTACTAT
TTTATACAGAAGAGCTCAATCGATTATGAACTAAAAGCTATCATCTTCTA
cacatgttttttgtttttcttatgtCATTGTCCTATCAATGctgtgtgtt
ttttgtttgttaacaAGAAAGCCAAATCAAGATTGGTCGGGAAAAAACGG
AAATCAACGGACGCACTGAATAATAGTTCAAGTTACAATAACCAAAATGA
CACAATAATCAGCAAGAGTCAATCAAGCCCTGTACTTGACACACggatgt
agtttttttaacacattttttctttagttctttCATTGTCAAACTATACG
TAGTCAAAGAAATTGTTTCGTACAATATGGTGTCGTATTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066641-exon-scaffold_457-1491911889:238243..239088 | TCONS_00066641-exon-scaffold_457-1491911889:238243..239088 | Clytia hemisphaerica | exon |
| TCONS_00066641-exon-scaffold_457-1510915933:238243..239088 | TCONS_00066641-exon-scaffold_457-1510915933:238243..239088 | Clytia hemisphaerica | exon |
| TCONS_00066641-exon-scaffold_457-1575043694:238243..239088 | TCONS_00066641-exon-scaffold_457-1575043694:238243..239088 | Clytia hemisphaerica | exon |
| TCONS_00066641-exon-scaffold_457-1491911889:239166..239934 | TCONS_00066641-exon-scaffold_457-1491911889:239166..239934 | Clytia hemisphaerica | exon |
| TCONS_00066641-exon-scaffold_457-1510915933:239166..239934 | TCONS_00066641-exon-scaffold_457-1510915933:239166..239934 | Clytia hemisphaerica | exon |
| TCONS_00066641-exon-scaffold_457-1575043694:239166..239934 | TCONS_00066641-exon-scaffold_457-1575043694:239166..239934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_457 | supercontig | scaffold_457:238243..239934 + |
Blast
The following BLAST results are available for this feature:
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