TCONS_00066649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066649
Unique NameTCONS_00066649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066649 ID=TCONS_00066649|Name=TCONS_00066649|organism=Clytia hemisphaerica|type=transcript|length=2845bp
AgaattttatgatttatttcaCACTAggaccaatttttcaaaatcagatt
tCATGAATGAGCTTATCCAATGACAAATTCTATCACTTATCAATCACATC
TGGGCGTGGAATCTCATTAAAGCAGATTTTGTTACTTCCAAAGGGATATC
TGTTCCAAATAAATGTTTGTCCCGTTTTCTTCATAATTATTGAAACCGGG
TCGAGAATTTATCATCGACCTATCCAATTATTGAAATGGCATTGCTCACA
GCTTATGTTACCATTTTGATTATATTCCACACCGTAACCATGGTAATGTG
TAACCAACAATCAAAGGAACCAATAATGAAATTTAACGGAGAACAAGATC
TGACCTACTTACCAAGTAGACGGCAAGTTTATCAGAACCCGTACGTCAAT
AAATTGGAATTCAAGTTCCGGACCATTCACCCGTCCGGTGTGCTATTGGT
AATGTCCGGTATCAAATTGAGTGTCGGGAGTGTCCGACAGGGCAACGTTC
TTGGTGTTTACTTGGTTCACGGTTATCTTCGTTATTCTTTGACCAGTTTC
AACCATCGAAAATCCAGTACGCTAATGGGCAACAACTTAAACGATAACCA
ATGGCATCACGTCTCGATAGTTCGAACCAAATCGTTAACGAGAATTCGTC
TCGATAACCAAACGAAATTACACATCGCTCCACAATTGTTCCAATCCTTT
TCTTACGATAAGCAAACATCGATCGGAGGCTCTGGCGATTCATCAAACCG
AAAACtctatcagaaaaaaatatctgattcaaaaaacattgaatCTACTA
GTATCCCAAATTTTAACGGATGTTTACAGCTGCTCTATATTGATGGTCGT
GATCCGGTGGCTTATTACAACCAAGGTAGCAACAGAGTTTCCATACAACC
ACCTGGTGAAAGGCTCCAATATTGCACCATCAATGATGAAGTTGAATCTA
TCGTTGGTCTTCCTAAACCATCCTCATCGCTTAAAATCAATCTTGGAAAA
TTGAATGTGACATTTTCTAACTCATTTCTTATTGAATTCTCGCTAAGAAC
ATTCACTCAGCAAGGAACAATACTGAAGACGATCAATGAAAATGAAGTTA
CTTTTGAAATCTATCTAAACCTCAACGCTGGCAAAATGACCTGTTCTCTT
GGTGAAAGTCTTTCGTTACCTTCAGAAATTTTGGTAGCGGACGGCTCTTG
GCATTACATTAGAATCGAAATCAATCCAAAGGAATTCCAACTTCAAGTTG
ATAAAACCATTCATAAAACAACGATTGCCATACACTCAAACGACATTCAA
AACTTGGCAAATATTGTAGAATTTGTTGGAATGGTTGGTTGTATCAACTC
gatcaaaatacaaaacaaaagaGTGGATTTGAGCCATGATGAAATAATCC
AACGGAAAAATATTCGTGATGTGTGTACGCTTTTGAACCAATGTTTCCCA
AATCCTTGTCTCAACAATGGTGTTTGTCGCCATGAAAGAACGGATACAAC
TTGTGATTGTACGCGAAATGAATTTTACGGTAAACATTGTGAGAAAACTC
TTTACAAACCGTCTTGTGCCGTTTACCAAAAGTTCGGATTAAACGAGTCT
TCATATTGTCTCATTGATCTAGACGGCTCGGGTCCTTTAATGTCGTTTAC
AAACTTATGCCAAATGTCACAACAAAAGGGTCAAATAGCTACTATAGTGA
AACACAATaaagcagatttttttgaagGTGCCTACGGAGACAGCAAAGCT
TTTAAAATGACATACCATGTTTTCAAGTACGAAATCGATGAAACCAGCCT
TAATCTCTTGATCAAGAACAGTCAAACTTGTCGTCAAAAAGTACTTTTCC
AATGCCGACGATTTGCGATGAAATTCAAGTCACCAGGAGATCCACCAAAT
TTGACATGGTTGTCTAACAGTGGAATACAACGTTTCTACTGGGGTGATGT
TCCCCCAAGCACTAGAGGCTGTGAATGTGGATTATCCAAATCTTGTACAG
ATACAAGCGAAATCTGTAATTGTGATGCACTTCAAGAAGACTGGGCACAG
GATGGTGGGTACATTACCAATAAGGAAGACCTTCCAATACGTAGAGTCAC
TTTAAGAGGCATTGAGGCGGGACATTCGAATATTACTATTGGTCCTTTGG
AATGTTTCGGAGATACTTCCGTTAAAGTTTCTGAACAAGAATTAACCGAA
TTTAAAATAAGGGAATTACTTCCTAAAGCTTGTTGCTCACTAAATAAGAA
AGATAAATTACTCAAAGCAGCAAATGAGAGCATCCAATTGAAGTTACGTA
GTGAAGAACCGTACGTAACAACGCAACCATTGACGCCGTCGACCAAACCG
TATTCCGTTTACGTTATCTCCCATGCCGCACTACCGGTGTCGAATATATT
CGAATCGGAAAATCAAAACGATGAAAACACATTTTCAATATACGAAGTTA
TACTTATTATCATCGCAGGTTTTTCCACGATGATCCTAGTAGTGAAATTC
ATTCTGTGCAATATTTTTCGTCGTCTTCACGGACAAGTCACGTTAAATCA
CGAACATAATAGATACGACGAACCCGCCATGTTTCCATCTACACAGTCAA
CTGGAGAGGTTGGAAATTCATCCTCTTTAAACCGGAATTACGGTGGTATA
AACTGTACCAAAACATGTGTTAAGTCGCCAAGTAACTATTGGGTTTGATA
CGCCTACCTAAAGTTAAAGTATCTCAGatgtaaaataaaatgtaattttt
gaaagtataaaaatgtttttcttgtgTTTCTCTGCACAATGAAGAGTGCT
CGATACGTGAGTAAAGATTGCTATATGAAAATTAAAGAAACGGAT
Run BLAST on NCBI

protein sequence of TCONS_00066649-protein

>TCONS_00066649-protein ID=TCONS_00066649-protein|Name=TCONS_00066649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=820bp
MALLTAYVTILIIFHTVTMVMCNQQSKEPIMKFNGEQDLTYLPSRRQVYQ
NPYVNKLEFKFRTIHPSGVLLVMSGIKLSVGSVRQGNVLGVYLVHGYLRY
SLTSFNHRKSSTLMGNNLNDNQWHHVSIVRTKSLTRIRLDNQTKLHIAPQ
LFQSFSYDKQTSIGGSGDSSNRKLYQKKISDSKNIESTSIPNFNGCLQLL
YIDGRDPVAYYNQGSNRVSIQPPGERLQYCTINDEVESIVGLPKPSSSLK
INLGKLNVTFSNSFLIEFSLRTFTQQGTILKTINENEVTFEIYLNLNAGK
MTCSLGESLSLPSEILVADGSWHYIRIEINPKEFQLQVDKTIHKTTIAIH
SNDIQNLANIVEFVGMVGCINSIKIQNKRVDLSHDEIIQRKNIRDVCTLL
NQCFPNPCLNNGVCRHERTDTTCDCTRNEFYGKHCEKTLYKPSCAVYQKF
GLNESSYCLIDLDGSGPLMSFTNLCQMSQQKGQIATIVKHNKADFFEGAY
GDSKAFKMTYHVFKYEIDETSLNLLIKNSQTCRQKVLFQCRRFAMKFKSP
GDPPNLTWLSNSGIQRFYWGDVPPSTRGCECGLSKSCTDTSEICNCDALQ
EDWAQDGGYITNKEDLPIRRVTLRGIEAGHSNITIGPLECFGDTSVKVSE
QELTEFKIRELLPKACCSLNKKDKLLKAANESIQLKLRSEEPYVTTQPLT
PSTKPYSVYVISHAALPVSNIFESENQNDENTFSIYEVILIIIAGFSTMI
LVVKFILCNIFRRLHGQVTLNHEHNRYDEPAMFPSTQSTGEVGNSSSLNR
NYGGINCTKTCVKSPSNYWV
Run BLAST on NCBI

transcript from alignment at scaffold_457:153818..165227-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066649 ID=TCONS_00066649|Name=TCONS_00066649|organism=Clytia hemisphaerica|type=transcript|length=11410bp|location=Sequence derived from alignment at scaffold_457:153818..165227- (Clytia hemisphaerica)
AGAATTTTATGATTTATTTCACACTAGGACCAATTTTTCAAAATCAGATT
TCATGAATGAGCTTATCCAATGACAAATTCTATCACTTATCAATCACATC
TGGGCGTGGAATCTCATTAAAGCAGATTTTGTTACTTCCAAAGGGATATC
TGTTCCAAATAAATGTTTGTCCCGTTTTCTTCATAATTATTGAAACCGGG
TCGAGAATTTATCATCGACCTATCCAATTATTGAAATGGCATTGCTCACA
GCTTATGTTACCATTTTGATTATATTCCACACCGTAACCATGGTAATGTG
TAACCAACAATCAAAGGAACCAATAATGAAATTTAACGGAGAACAAGATC
TGACCTACTTACCAAGTAGACGGCAAGTTTATCAGAACCCGTACGTCAAT
AAATTGGAATTCAAGTTCCGGACCATTCACCCGTCCGGTGTGCTATTGGT
AATGTCCGGTATCAAATTGAGTGTCGGGAGTGTCCGACAGGGCAACGTTC
TTGGTGTTTACTTGGTTCACGGTTATCTTCGGTAAGAATGTTTCATTTTT
TATAGCTTTTAGTTAGAAAACTAGCCGTCACCCGGCGTCGCAACCGCCGA
GGTGGAGATAAGCTGAACGCATCATAAGCCCTTTGGATAGTTCATAATTT
TATCATTATTATTTTATCATTATGATTTTAAGTGACAATAAGTCAAGAAA
TATTTAGCCAAAAAGGTCAATTACCTGAAATGAAAGAATTGCAAATAGGA
GAATATTTTACAATGAAAAACCAAAGGAAATTTTAAATTTTCAAAAAAAG
ATGAAAGAATTGGAAAAAATGTTAAACAAGGTTTTTCATGTCTTTCCGCC
ATCATGGAAACAAATATTCGAATCTGTCGAGACGATCACTGTTGCAAATC
GAACGTTCGCTTCCATAATGGCGTTTCTGCCTGACTTTAGAACTTCCTCG
TGTAAATTATGTACGTCAAAAGAAGCGTTAGTGTATAGATTTCAGAGCTG
CCTGTTATGTCTATTATGACTTCACAAAGTACTTTTTCCCTAATTTCTTA
AAAAAGCCTATTCTTATTCTATTAAAAGACAATNNNNNNNNNNNNNNNNN
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NGAAAGAAGATCGATTATGACTTGAAAATCAAAATCAACGGACATCGGCT
TAGACCCAGCAAGGTTGTAAAGTATCTTGGTGTATACATCGATGAACATC
TGAACTAGTCTGAATCGCAGACCTCTACAAAACCCCAGGTAGTATAGGTC
TGCTTAATAATCTACCAGCCGCTTTCCGGTTCGCAAAGGAAATCTTGGCG
AGTTAATAATTTGATTGACATTGATGTGCACGCAAAAAAAGATTGTTTCG
AACGTTTTCAATGGAATGTTTACATTCGAAATTCGAATCCCAGACCAGAA
AAACAAAACAGAAAAAAGATGAAAAACAATCTGATGCGCGCATTATCTAC
AGTCTGTAGATTTATTTTTGACTTTTGCTTTTATAAGATATCAGGTCTGT
AAATTTATCAAAACTTTTCCATCAGCTCTTCGGTCGAATCTCAAAAAATA
CAAATATGAACACAAAAGTGAAAGAAAACAACCAAAAACACTCGCCAATC
TCTTCAAAGAATTGAAAAAAACAAAGGCCACACAGTATTAAAAAGTGAAA
TGCCAAAGCTGAAGAAAAGTTCTCTCTTTGTTTTAATATTTAAAGGCCCT
TGTTGAAGGAACAACAACACTCCCTTTTGTAGAATCATAAAGAAGTAATG
TCAGAAATATTCAATATTCAATATGACCCCCAAAATGTACTGTATATACA
TAACTAGAATACCTTGAAATAATCTGCAACATATCTGTAGAACTGACAGA
ACAATTATCTGGAGCCAAAGTGATCAACGAATCCAGTGTGGTAAAAAATT
ATACACTTATACAAGCCCAAATTCAAGCATCGAAATGTAGTTTTATGAAG
CAAAATTTTGTTGGTGCACACAGAAGATACATCAGGGCACTTAAATTCAA
TTAATCTAATTTCTCATCTTTTACAAAATCTCCACATTAAACAAGAAAGG
AGGAAGAAAAACAAGCAAACTTCCTTCCGCCTACTTTTTTTTCGAAATCC
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNTTTCACTTGTTGTTGTAATTATATCGTGCGGC
CACCTCCTTAGTTTAGCATTATGTCTATGAGTGTGGTCGCTAGTCTCGCT
TTCGTTGACAAATAAATGATTTACCTACCTACCTACCTACAATTCTGAAA
TCTACATCCTAATAATACACTTCTTTTGACGTATAAATGTCCATGCCTTA
GGTCCCCAATTTTCTGCGCCAAACTTATGTCCTTTTTGGGCATACCATAA
GTTACACGAGTCCGTTCAAAATTCAAGTTTGATTCATTTGTACAAGTCAA
GATAGAAATGATCTCGGTAGAGTCGTGTAGTCAGATAACTTAGCATCTTT
GAAATTAAGCTATCTCGAATTTATGATCACCAAATTTTGTTAATAAATTC
ATTCGTTTGAAGTATAAACTTCAATTTTGAAAATTTTCGAACTTCTTTCT
TTAGAAATTATAGTACCCGAAAACCCAAAAATATCTTCTCAGACTGTTTA
TTGAGATTGAAACCTATAATTTCGAATTAATCAGTCGATTGATTAAAAGA
TAAGAGGCAAAACAATAATTTTTTTGTACCTTGATTTTACTTTTAGTTAT
TCTTTGACCAGTTTCAACCATCGAAAATCCAGTACGCTAATGGGCAACAA
CTTAAACGATAACCAATGGCATCACGTCTCGATAGTTCGAACCAAATCGT
TAACGAGAATTCGTCTCGATAACCAAACGAAATTACACATCGCTCCACAA
TTGTTCCAATCCTTTTCTTACGATAAGCAAACATCGATCGGAGGCTCTGG
CGATTCATCAAACCGAAAACTCTATCAGAAAAAAATATCTGATTCAAAAA
ACATTGAATCTACTAGTATCCCAAATTTTAACGGATGTTTACAGCTGCTC
TATATTGATGGTCGTGATCCGGTGGCTTATTACAACCAAGGTAGCAACAG
AGTTTCCATACAACCACCTGGTGAAAGGCTCCAATATTGCACCATCAATG
ATGAAGTTGAATCTATCGTTGGTCTTCCTAAACCATCCTCATCGCTTAAA
ATCAATCTTGGAAAATTGAATGTGACATTTTCTAACTCATTTCTTATTGA
ATTCTCGCTAAGAACATTCACTCAGCAAGGAACAATACTGAAGACGATCA
ATGAAAATGAAGTTACTTTTGAAATCTATCTAAACCTCAACGCTGGCAAA
ATGACCTGTTCTCTTGGTGAAAGTCTTTCGTTACCTTCAGAAATTTTGGT
AGCGGACGGCTCTTGGCATTACATTAGAATCGAAATCAATCCAAAGGAAT
TCCAACTTCAAGTTGATAAAACCATTCATAAAACAACGATTGCCATACAC
TCAAACGACATTCAAAACTTGGCAAATATTGTAGAATTTGTTGGAATGGT
TGGTTGTATCAACTCGATCAAAATACAAAACAAAAGAGTGGATTTGAGCC
ATGATGAAATAATCCAACGGAAAAATATTCGTGATGTGTGTACGCTTTTG
AACCAATGTTTCCCAAATCCTTGTCTCAACAATGGTGTTTGTCGCCATGA
AAGAACGGATACAACTTGTGATTGTACGCGAAATGAATTTTACGGTAAAC
ATTGTGAGAAAACTCTTTACAAACCGTCTTGTGCCGTTTACCAAAAGTTC
GGATTAAACGAGTCTTCATATTGTCTCATTGATCTAGACGGCTCGGGTCC
TTTAATGTCGTTTACAAACTTATGCCAAATGTCACAACAAAAGGGTCAAA
TAGCTACTATAGTGAAACACAATAAAGCAGATTTTTTTGAAGGTGCCTAC
GGAGACAGCAAAGCTTTTAAAATGACATACCATGTTTTCAAGTACGAAAT
CGATGAAACCAGCCTTAATCTCTTGATCAAGAACAGTCAAACTTGTCGTC
AAAAAGTACTTTTCCAATGCCGACGATTTGCGATGAAATTCAAGTCACCA
GGAGATCCACCAAATTTGACATGGTTGTCTAACAGTGGAATACAACGTTT
CTACTGGGGTGATGTTCCCCCAAGCACTAGAGGCTGTGAATGTGGATTAT
CCAAATCTTGTACAGATACAAGCGAAATCTGTAATTGTGATGCACTTCAA
GAAGACTGGGCACAGGATGGTGGGTACATTACCAATAAGGAAGACCTTCC
AATACGTAGAGTCACTTTAAGAGGCATTGAGGCGGGACATTCGAATATTA
CTATTGGTCCTTTGGAATGTTTCGGAGATACTTCCGTTAAAGTTTCTGAA
CAAGAATTAACCGAATTTAAAATAAGGGAATTACTTCCTAAAGCTTGTTG
CTCACTAAATAAGAAAGATAAATTACTCAAAGCAGCAAATGAGAGCATCC
AATTGAAGTTACGTAGTGAAGAACCGTACGTAACAACGCAACCATTGACG
CCGTCGACCAAACCGTATTCCGTTTACGTTATCTCCCATGCCGCACTACC
GGTGTCGAATATATTCGAATCGGAAAATCAAAACGATGAAAACACATTTT
CAATATACGAAGTTATACTTATTATCATCGCAGGTTTTTCCACGATGATC
CTAGTAGTGAAATTCATTCTGTGCAATATTTTTCGTCGTCTTCACGGACA
AGTCACGTTAAATCACGAACATAATAGATACGACGAACCCGCCATGTTTC
CATCTACACAGTCAACTGGAGAGGTTGGAAATTCATCCTCTTTAAACCGG
AATTACGGTGGTATAAACTGTACCAAAACATGTGTTAAGTCGCCAAGTAA
CTATTGGGTTTGATACGCCTACCTAAAGTTAAAGTATCTCAGATGTAAAA
TAAAATGTAATTTTTGAAAGTATAAAAATGTTTTTCTTGTGTTTCTCTGC
ACAATGAAGAGTGCTCGATACGTGAGTAAAGATTGCTATATGAAAATTAA
AGAAACGGAT

Coding sequence (CDS) from alignment at scaffold_457:153818..165227-

>TCONS_00066649 ID=TCONS_00066649|Name=TCONS_00066649|organism=Clytia hemisphaerica|type=CDS|length=4926bp|location=Sequence derived from alignment at scaffold_457:153818..165227- (Clytia hemisphaerica)
TTATTCTTTGACCAGTTTCAACCATCGAAAATCCAGTACGCTAATGGGCA
ACAACTTAAACGATAACCAATGGCATCACGTCTCGATAGTTCGAACCAAA
TCGTTAACGAGAATTCGTCTCGATAACCAAACGAAATTACACATCGCTCC
ACAATTGTTCCAATCCTTTTCTTACGATAAGCAAACATCGATCGGAGGCT
CTGGCGATTCATCAAACCGAAAACTCTATCAGAAAAAAATATCTGATTCA
AAAAACATTGAATCTACTAGTATCCCAAATTTTAACGGATGTTTACAGCT
GCTCTATATTGATGGTCGTGATCCGGTGGCTTATTACAACCAAGGTAGCA
ACAGAGTTTCCATACAACCACCTGGTGAAAGGCTCCAATATTGCACCATC
AATGATGAAGTTGAATCTATCGTTGGTCTTCCTAAACCATCCTCATCGCT
TAAAATCAATCTTGGAAAATTGAATGTGACATTTTCTAACTCATTTCTTA
TTGAATTCTCGCTAAGAACATTCACTCAGCAAGGAACAATACTGAAGACG
ATCAATGAAAATGAAGTTACTTTTGAAATCTATCTAAACCTCAACGCTGG
CAAAATGACCTGTTCTCTTGGTGAAAGTCTTTCGTTACCTTCAGAAATTT
TGGTAGCGGACGGCTCTTGGCATTACATTAGAATCGAAATCAATCCAAAG
GAATTCCAACTTCAAGTTGATAAAACCATTCATAAAACAACGATTGCCAT
ACACTCAAACGACATTCAAAACTTGGCAAATATTGTAGAATTTGTTGGAA
TGGTTGGTTGTATCAACTCGATCAAAATACAAAACAAAAGAGTGGATTTG
AGCCATGATGAAATAATCCAACGGAAAAATATTCGTGATGTGTGTACGCT
TTTGAACCAATGTTTCCCAAATCCTTGTCTCAACAATGGTGTTTGTCGCC
ATGAAAGAACGGATACAACTTGTGATTGTACGCGAAATGAATTTTACGGT
AAACATTGTGAGAAAACTCTTTACAAACCGTCTTGTGCCGTTTACCAAAA
GTTCGGATTAAACGAGTCTTCATATTGTCTCATTGATCTAGACGGCTCGG
GTCCTTTAATGTCGTTTACAAACTTATGCCAAATGTCACAACAAAAGGGT
CAAATAGCTACTATAGTGAAACACAATAAAGCAGATTTTTTTGAAGGTGC
CTACGGAGACAGCAAAGCTTTTAAAATGACATACCATGTTTTCAAGTACG
AAATCGATGAAACCAGCCTTAATCTCTTGATCAAGAACAGTCAAACTTGT
CGTCAAAAAGTACTTTTCCAATGCCGACGATTTGCGATGAAATTCAAGTC
ACCAGGAGATCCACCAAATTTGACATGGTTGTCTAACAGTGGAATACAAC
GTTTCTACTGGGGTGATGTTCCCCCAAGCACTAGAGGCTGTGAATGTGGA
TTATCCAAATCTTGTACAGATACAAGCGAAATCTGTAATTGTGATGCACT
TCAAGAAGACTGGGCACAGGATGGTGGGTACATTACCAATAAGGAAGACC
TTCCAATACGTAGAGTCACTTTAAGAGGCATTGAGGCGGGACATTCGAAT
ATTACTATTGGTCCTTTGGAATGTTTCGGAGATACTTCCGTTAAAGTTTC
TGAACAAGAATTAACCGAATTTAAAATAAGGGAATTACTTCCTAAAGCTT
GTTGCTCACTAAATAAGAAAGATAAATTACTCAAAGCAGCAAATGAGAGC
ATCCAATTGAAGTTACGTAGTGAAGAACCGTACGTAACAACGCAACCATT
GACGCCGTCGACCAAACCGTATTCCGTTTACGTTATCTCCCATGCCGCAC
TACCGGTGTCGAATATATTCGAATCGGAAAATCAAAACGATGAAAACACA
TTTTCAATATACGAAGTTATACTTATTATCATCGCAGGTTTTTCCACGAT
GATCCTAGTAGTGAAATTCATTCTGTGCAATATTTTTCGTCGTCTTCACG
GACAAGTCACGTTAAATCACGAACATAATAGATACGACGAACCCGCCATG
TTTCCATCTACACAGTCAACTGGAGAGGTTGGAAATTCATCCTCTTTAAA
CCGGAATTACGGTGGTATAAACTGTACCAAAACATGTGTTAAGTCGCCAA
GTAACTATTGGGTTTGAATGGCATTGCTCACAGCTTATGTTACCATTTTG
ATTATATTCCACACCGTAACCATGGTAATGTGTAACCAACAATCAAAGGA
ACCAATAATGAAATTTAACGGAGAACAAGATCTGACCTACTTACCAAGTA
GACGGCAAGTTTATCAGAACCCGTACGTCAATAAATTGGAATTCAAGTTC
CGGACCATTCACCCGTCCGGTGTGCTATTGGTAATGTCCGGTATCAAATT
GAGTGTCGGGAGTGTCCGACAGGGCAACGTTCTTGGTGTTTACTTGGTTC
ACGGTTATCTTCGTTATTCTTTGACCAGTTTCAACCATCGAAAATCCAGT
ACGCTAATGGGCAACAACTTAAACGATAACCAATGGCATCACGTCTCGAT
AGTTCGAACCAAATCGTTAACGAGAATTCGTCTCGATAACCAAACGAAAT
TACACATCGCTCCACAATTGTTCCAATCCTTTTCTTACGATAAGCAAACA
TCGATCGGAGGCTCTGGCGATTCATCAAACCGAAAACTCTATCAGAAAAA
AATATCTGATTCAAAAAACATTGAATCTACTAGTATCCCAAATTTTAACG
GATGTTTACAGCTGCTCTATATTGATGGTCGTGATCCGGTGGCTTATTAC
AACCAAGGTAGCAACAGAGTTTCCATACAACCACCTGGTGAAAGGCTCCA
ATATTGCACCATCAATGATGAAGTTGAATCTATCGTTGGTCTTCCTAAAC
CATCCTCATCGCTTAAAATCAATCTTGGAAAATTGAATGTGACATTTTCT
AACTCATTTCTTATTGAATTCTCGCTAAGAACATTCACTCAGCAAGGAAC
AATACTGAAGACGATCAATGAAAATGAAGTTACTTTTGAAATCTATCTAA
ACCTCAACGCTGGCAAAATGACCTGTTCTCTTGGTGAAAGTCTTTCGTTA
CCTTCAGAAATTTTGGTAGCGGACGGCTCTTGGCATTACATTAGAATCGA
AATCAATCCAAAGGAATTCCAACTTCAAGTTGATAAAACCATTCATAAAA
CAACGATTGCCATACACTCAAACGACATTCAAAACTTGGCAAATATTGTA
GAATTTGTTGGAATGGTTGGTTGTATCAACTCGATCAAAATACAAAACAA
AAGAGTGGATTTGAGCCATGATGAAATAATCCAACGGAAAAATATTCGTG
ATGTGTGTACGCTTTTGAACCAATGTTTCCCAAATCCTTGTCTCAACAAT
GGTGTTTGTCGCCATGAAAGAACGGATACAACTTGTGATTGTACGCGAAA
TGAATTTTACGGTAAACATTGTGAGAAAACTCTTTACAAACCGTCTTGTG
CCGTTTACCAAAAGTTCGGATTAAACGAGTCTTCATATTGTCTCATTGAT
CTAGACGGCTCGGGTCCTTTAATGTCGTTTACAAACTTATGCCAAATGTC
ACAACAAAAGGGTCAAATAGCTACTATAGTGAAACACAATAAAGCAGATT
TTTTTGAAGGTGCCTACGGAGACAGCAAAGCTTTTAAAATGACATACCAT
GTTTTCAAGTACGAAATCGATGAAACCAGCCTTAATCTCTTGATCAAGAA
CAGTCAAACTTGTCGTCAAAAAGTACTTTTCCAATGCCGACGATTTGCGA
TGAAATTCAAGTCACCAGGAGATCCACCAAATTTGACATGGTTGTCTAAC
AGTGGAATACAACGTTTCTACTGGGGTGATGTTCCCCCAAGCACTAGAGG
CTGTGAATGTGGATTATCCAAATCTTGTACAGATACAAGCGAAATCTGTA
ATTGTGATGCACTTCAAGAAGACTGGGCACAGGATGGTGGGTACATTACC
AATAAGGAAGACCTTCCAATACGTAGAGTCACTTTAAGAGGCATTGAGGC
GGGACATTCGAATATTACTATTGGTCCTTTGGAATGTTTCGGAGATACTT
CCGTTAAAGTTTCTGAACAAGAATTAACCGAATTTAAAATAAGGGAATTA
CTTCCTAAAGCTTGTTGCTCACTAAATAAGAAAGATAAATTACTCAAAGC
AGCAAATGAGAGCATCCAATTGAAGTTACGTAGTGAAGAACCGTACGTAA
CAACGCAACCATTGACGCCGTCGACCAAACCGTATTCCGTTTACGTTATC
TCCCATGCCGCACTACCGGTGTCGAATATATTCGAATCGGAAAATCAAAA
CGATGAAAACACATTTTCAATATACGAAGTTATACTTATTATCATCGCAG
GTTTTTCCACGATGATCCTAGTAGTGAAATTCATTCTGTGCAATATTTTT
CGTCGTCTTCACGGACAAGTCACGTTAAATCACGAACATAATAGATACGA
CGAACCCGCCATGTTTCCATCTACACAGTCAACTGGAGAGGTTGGAAATT
CATCCTCTTTAAACCGGAATTACGGTGGTATAAACTGTACCAAAACATGT
GTTAAGTCGCCAAGTAACTATTGGGTTTGAATGGCATTGCTCACAGCTTA
TGTTACCATTTTGATTATATTCCACACCGTAACCATGGTAATGTGTAACC
AACAATCAAAGGAACCAATAATGAAATTTAACGGAGAACAAGATCTGACC
TACTTACCAAGTAGACGGCAAGTTTATCAGAACCCGTACGTCAATAAATT
GGAATTCAAGTTCCGGACCATTCACCCGTCCGGTGTGCTATTGGTAATGT
CCGGTATCAAATTGAGTGTCGGGAGTGTCCGACAGGGCAACGTTCTTGGT
GTTTACTTGGTTCACGGTTATCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041685XLOC_041685Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066649-proteinTCONS_00066649-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066649-exon-scaffold_457-1575043694:164697..165227TCONS_00066649-exon-scaffold_457-1575043694:164697..165227Clytia hemisphaericaexon
TCONS_00066649-exon-scaffold_457-1575043694:153818..156131TCONS_00066649-exon-scaffold_457-1575043694:153818..156131Clytia hemisphaericaexon
TCONS_00066649-exon-scaffold_457-1510915933:164697..165227TCONS_00066649-exon-scaffold_457-1510915933:164697..165227Clytia hemisphaericaexon
TCONS_00066649-exon-scaffold_457-1510915933:153818..156131TCONS_00066649-exon-scaffold_457-1510915933:153818..156131Clytia hemisphaericaexon
TCONS_00066649-exon-scaffold_457-1491911889:164697..165227TCONS_00066649-exon-scaffold_457-1491911889:164697..165227Clytia hemisphaericaexon
TCONS_00066649-exon-scaffold_457-1491911889:153818..156131TCONS_00066649-exon-scaffold_457-1491911889:153818..156131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_457supercontigscaffold_457:153818..165227 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0262492	0.0304778	0	0.490053	0.200795	4.55084	5.281	3.94687	3.24518	3.19075	3.98879	0.0358044	0	0	0.00820149	1.29326	2.0401	0	0	3.7477	3.8845	1.11109	1.87998	2.45654	4.21716	0	0.0196955	0.0149384	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001791Laminin_G
IPR000742EGF-like_dom
IPR013320ConA-like_dom
Blast
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BLAST of TCONS_00066649 vs. Swiss-Prot (Human)
Match: CNTP5 (Contactin-associated protein-like 5 OS=Homo sapiens GN=CNTNAP5 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.249e-52
Identity = 171/653 (26.19%), Postives = 273/653 (41.81%), Query Frame = 2 
Query:  314 KEPIMKFNGEQDLTYLPSRRQVYQNPYVNKLEFKFRTIHPSGVLLVMSGIKLSVGSVRQGNVLGVYLVHG--YLRYSLTSFNHRKSSTL----MGNNLNDNQWHHVSIVRTKSLTRIRLDNQTKLHIAPQLFQSFSYDKQTSIGGSGDSSNRKLYQKKISDSKNIESTSIPNFNGCLQLLYIDGRDPVAYYNQGSNRVSIQPPGERLQYCTINDEVESIVGLPKPSSSLKINLGKLNVTFSNSFLIEFSLRTFTQQGTILKTINENEVTFEIYLNLNAGKMTCSLGESLSLPSEILVA----DGSWHYIRIEINPKEFQLQVDKTI-----HKTTIAIHSN-------------DIQNLANIVEFVGMVGCINSIKIQNKRVDLSHDEIIQRKNIRDV----CTLLNQCFPNPCLNNGVCRHERTDTTCDCTRNEFYGKHCEKTLYKPSCAVYQKFGLNESSYCLIDLDGSGPLMSFTNLCQMSQQKGQIATIVKHNKADF--FEGAYGDSKAFKMTYHVFKYEIDETSLNLLIKNSQTCRQKVLFQCRRFAMKFKSPGDPPNLTWLSNSGIQRFYWGDVPPSTRGCECGLSKSCTDTSEICNCDALQEDWAQDGGYITNKEDLPIRRVTLRGIEAGHSNIT--IGPLECFGD 2164
            K  +  F+G   L Y     Q   +   + +  KF+++   GVL    G        ++G+ + + L  G   L  +L     R SS+L    +G+ L+D  WH V I R        +D  T+         +   D + S GG         + KK             NF+GC++ LY +G + +    +  +++     G     C+    V   +     S S  +  G   +   +   + F  RT+ + G +L T   +E +  + L+L  G +   + +     +EIL      DG WH + I        L +D          T + I+S              D Q L  I  F G   C+  I I N+  DL   +     N  D+    C++ ++C PN C + G C    T   C+C+   + G  C  ++Y+ SC VY+  G N + +  ID DGSGPL      C +++ K  I T V+HN  +     GA    K + M      Y      L  +I  S+ C Q+V + CRR  +   +P   P   W+  S  +  YWG  PP  + CECGL +SC D    CNCDA +++W  D G+++ K+ LP+ ++ +   +  +S     IGPL C+GD
Sbjct:  177 KSDVADFDGRSSLLY--RFNQKLMSTLKDVISLKFKSMQGDGVLFHGEG--------QRGDHITLELQKGRLALHLNLGDSKARLSSSLPSATLGSLLDDQHWHSVLIERVGKQVNFTVDKHTQHFRTKGETDALDIDYELSFGGIPVPGKPGTFLKK-------------NFHGCIENLYYNGVNIIDLAKRRKHQIYT---GNVTFSCSEPQIVP--ITFVNSSGSYLLLPGTPQI---DGLSVSFQFRTWNKDGLLLST-ELSEGSGTLLLSLEGGILRLVIQKMTERVAEILTGSNLNDGLWHSVSINARRNRITLTLDDEAAPPAPDSTWVQIYSGNSYYFGGCPDNLTDSQCLNPIKAFQG---CMRLIFIDNQPKDLISVQQGSLGNFSDLHIDLCSIKDRCLPNYCEHGGSCSQSWTTFYCNCSDTSYTGATCHNSIYEQSCEVYRHQG-NTAGFFYIDSDGSGPLGPLQVYCNITEDK--IWTSVQHNNTELTRVRGA-NPEKPYAM---ALDYGGSMEQLEAVIDGSEHCEQEVAYHCRRSRL-LNTPDGTPFTWWIGRSNERHPYWGGSPPGVQQCECGLDESCLDIQHFCNCDADKDEWTNDTGFLSFKDHLPVTQIVITDTDRSNSEAAWRIGPLRCYGD 786
The following BLAST results are available for this feature:
BLAST of TCONS_00066649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNTP59.249e-5226.19Contactin-associated protein-like 5 OS=Homo sapien... [more]
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