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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066667 ID=TCONS_00066667|Name=TCONS_00066667|organism=Clytia hemisphaerica|type=transcript|length=1146bp
cccagccatagaaAACAGGAgtatatcaatccccatcgagtttcagccCG
TTTTTTTATACCTGGTGGCTGAAAGAATTCATCCGGGTTTGTGAGGAGGG
GGTGTGATCATGAGTAAATGATAATGAAAGCATAAACATTTTACCAAATC
TAGTGGAAAGCTTTGTTAAACAGTatgaaaaattatatattttaaatttt
tgtgataGAAGTTTTTATAATATTCATCGGAATGGAGTTCTTCTGCTGTT
CAATATTTATAACACTTCTTTGTTTAGGTCTTCCTCTCAAACTCGTTGAT
TGGTTAGAGCTTTTGTACGACCTTcgattgaaaatcaaaaaagcatACCG
CATTTACTGGACAGtgacataaaaaaaacaagaggCAGGTGTAGAATACA
ATAGCTCTTAGTTCATAATCGATTGAATCTTTATTAGGTACCAGAAAGTA
AACGAGAAGATTCAATATCATTGGTAAACTGAAAATCACATCTGTCGTGA
TATACAAGGAAGCGAGTCTTGTCAACGGTAGTGCCTTTTTGTTCTTGAAA
GccatttttaagttttgaacatattttcgtaaaatcaaaatagattttCC
ATATAATACAATCACTATAATTAACATCAAAACGTTAATGGGTAGCGCCA
CAAAGATGGCCGACAGCTCAAAAAATCGTGACACAGCACTGAGAATGACT
TGTATTAGAATCAATACGTATACAAAGGCTAGACTATTCTTGAAACGTAA
CCCTGTGTAAACTTGATTATACAAATTCTGGTACCTAATTCTTAAGTACC
GGTCAAATCCGAGCATTGCAGTTAAATAAGTCGAGCTGTATAGGAAGAAC
TCAATAACCAATATAAAGAGCCTCATTTCTGTGCATCCAACCTCGCTTCC
ATCATTAAGAATCACTGCTAAAACAGGTTGGCCAGTGAGAGCGAAGACTA
CGTTTGAGATTGATAGATagtaaatcaattttattgattgGTTTCGATTG
TTCTTTGGTTTCGAGCGAATTGATTTGATGACAAGAATATTGGTGATAAA
ATTAAACACAGTGATAGAAATGTCTGATGCAAAAAGCCAAATCTTTTGTT
GCTGACTCAGCATTATTATTGTGCCATACGTTGATGTGCATCTTCT Run BLAST on NCBI protein sequence of TCONS_00066667-protein >TCONS_00066667-protein ID=TCONS_00066667-protein|Name=TCONS_00066667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=280bp
RRCTSTYGTIIMLSQQQKIWLFASDISITVFNFITNILVIKSIRSKPKNN
RNQSIKLIYYLSISNVVFALTGQPVLAVILNDGSEVGCTEMRLFILVIEF
FLYSSTYLTAMLGFDRYLRIRYQNLYNQVYTGLRFKNSLAFVYVLILIQV
ILSAVSRFFELSAIFVALPINVLMLIIVIVLYGKSILILRKYVQNLKMAF
KNKKALPLTRLASLYITTDVIFSLPMILNLLVYFLVPNKDSIDYELRAIV
FYTCLLFFLCHCPVNAVCFFDFQSKVVQKL Run BLAST on NCBI transcript from alignment at scaffold_457:244880..246025 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066667 ID=TCONS_00066667|Name=TCONS_00066667|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at scaffold_457:244880..246025 (Clytia hemisphaerica)
AGAAGATGCACATCAACGTATGGCACAATAATAATGCTGAGTCAGCAACA
AAAGATTTGGCTTTTTGCATCAGACATTTCTATCACTGTGTTTAATTTTA
TCACCAATATTCTTGTCATCAAATCAATTCGCTCGAAACCAAAGAACAAT
CGAAACcaatcaataaaattgatttactATCTATCAATCTCAAACGTAGT
CTTCGCTCTCACTGGCCAACCTGTTTTAGCAGTGATTCTTAATGATGGAA
GCGAGGTTGGATGCACAGAAATGAGGCTCTTTATATTGGTTATTGAGTTC
TTCCTATACAGCTCGACTTATTTAACTGCAATGCTCGGATTTGACCGGTA
CTTAAGAATTAGGTACCAGAATTTGTATAATCAAGTTTACACAGGGTTAC
GTTTCAAGAATAGTCTAGCCTTTGTATACGTATTGATTCTAATACAAGTC
ATTCTCAGTGCTGTGTCACGATTTTTTGAGCTGTCGGCCATCTTTGTGGC
GCTACCCATTAACGTTTTGATGTTAATTATAGTGATTGTATTATATGGaa
aatctattttgattttacgaaaatatgttcaaaacttaaaaatggCTTTC
AAGAACAAAAAGGCACTACCGTTGACAAGACTCGCTTCCTTGTATATCAC
GACAGATGTGATTTTCAGTTTACCAATGATATTGAATCTTCTCGTTTACT
TTCTGGTACCTAATAAAGATTCAATCGATTATGAACTAAGAGCTATTGTA
TTCTACACCTGcctcttgttttttttatgtcaCTGTCCAGTAAATGCGGT
atgcttttttgattttcaatcgAAGGTCGTACAAAAGCTCTAACCAATCA
ACGAGTTTGAGAGGAAGACCTAAACAAAGAAGTGTTATAAATATTGAACA
GCAGAAGAACTCCATTCCGATGAATATTATAAAAACTTCtatcacaaaaa
tttaaaatatataatttttcatACTGTTTAACAAAGCTTTCCACTAGATT
TGGTAAAATGTTTATGCTTTCATTATCATTTACTCATGATCACACCCCCT
CCTCACAAACCCGGATGAATTCTTTCAGCCACCAGGTATAAAAAAACGgg
ctgaaactcgatggggattgatatacTCCTGTTttctatggctggg Coding sequence (CDS) from alignment at scaffold_457:244880..246025 >TCONS_00066667 ID=TCONS_00066667|Name=TCONS_00066667|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_457:244880..246025 (Clytia hemisphaerica)
AGAAGATGCACATCAACGTATGGCACAATAATAATGCTGAGTCAGCAACA
AAAGATTTGGCTTTTTGCATCAGACATTTCTATCACTGTGTTTAATTTTA
TCACCAATATTCTTGTCATCAAATCAATTCGCTCGAAACCAAAGAACAAT
CGAAACcaatcaataaaattgatttactATCTATCAATCTCAAACGTAGT
CTTCGCTCTCACTGGCCAACCTGTTTTAGCAGTGATTCTTAATGATGGAA
GCGAGGTTGGATGCACAGAAATGAGGCTCTTTATATTGGTTATTGAGTTC
TTCCTATACAGCTCGACTTATTTAACTGCAATGCTCGGATTTGACCGGTA
CTTAAGAATTAGGTACCAGAATTTGTATAATCAAGTTTACACAGGGTTAC
GTTTCAAGAATAGTCTAGCCTTTGTATACGTATTGATTCTAATACAAGTC
ATTCTCAGTGCTGTGTCACGATTTTTTGAGCTGTCGGCCATCTTTGTGGC
GCTACCCATTAACGTTTTGATGTTAATTATAGTGATTGTATTATATGGaa
aatctattttgattttacgaaaatatgttcaaaacttaaaaatggCTTTC
AAGAACAAAAAGGCACTACCGTTGACAAGACTCGCTTCCTTGTATATCAC
GACAGATGTGATTTTCAGTTTACCAATGATATTGAATCTTCTCGTTTACT
TTCTGGTACCTAATAAAGATTCAATCGATTATGAACTAAGAGCTATTGTA
TTCTACACCTGcctcttgttttttttatgtcaCTGTCCAGTAAATGCGGT
atgcttttttgattttcaatcgAAGGTCGTACAAAAGCTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066667-exon-scaffold_457-1491911889:244880..246025 | TCONS_00066667-exon-scaffold_457-1491911889:244880..246025 | Clytia hemisphaerica | exon |
| TCONS_00066667-exon-scaffold_457-1510915933:244880..246025 | TCONS_00066667-exon-scaffold_457-1510915933:244880..246025 | Clytia hemisphaerica | exon |
| TCONS_00066667-exon-scaffold_457-1575043694:244880..246025 | TCONS_00066667-exon-scaffold_457-1575043694:244880..246025 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_457 | supercontig | scaffold_457:244880..246025 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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