TCONS_00066669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066669
Unique NameTCONS_00066669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2086

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066669 ID=TCONS_00066669|Name=TCONS_00066669|organism=Clytia hemisphaerica|type=transcript|length=2086bp
TTTCTAACTAGCttacaaatgataaaaaaaatacataGCTGTATTAAGAA
AAAGGCAATATTGACATCTGATCGGACAAGAGTAAGCACTATAGGCGGTG
GAAAGTCCTTTCTTTGGACTGCTTTCTTACGTAAATACTTTTTATAAAGA
TGGAGCGAAGATTTGACCGAATGAGACAGATTCAAACTGTTGGGTTTAGC
ACACTTATGATCATGCAACTTAGACCGTGCTATGATTTGTTTAACCTTCG
AGGTTATATTCGTATTGGTTCAAACGTGTGGGCGAGGGCGGTCAACGGTG
ACTATTACAGAGGCGTGGTGACCGCACTGACAGATAAAGTTCACGTCAAG
TTCGAAGATGGCGAAACCATATCTCATGAAAGGAAAGAAGAGGAGGCTTT
GGTATATGATATGGCTCCTAATccaaatgaaatcaaaattggtACACGAG
TTATTGCTCATTGGTCAGGCGTGGCAGCCTATCTACCTGGCGCTGTTACC
AAGATTGAAGGCAATAAATATCAAGTGCTGTACGACGATGGTGATAGGTT
AGGAAACCGGTTGGAAcaaatgagaattttaaaacCACCCCTCTATTTTG
GGCCTGGATCGGGACGCTCAAACTTACAAAAGAAATACTCGATGAAAACA
ACCGCTCTGATTGGTTCATCGTCTACATCGGAGGATGGTCCAAAACGGTC
CGCATCGGTCGACATCAACCGCGCGCGCACGCCTCGAACGCCTGCTGATG
ATGATGCATTCTTCCCTGATCGCAAAGGAAGCCCTCAGGTACCGCGCAGT
AAGTCATCGCCGGCAATTACGAACCGTAATGCGCCCGCGGGCGGTGGCGG
TTCTTTAAAATCGGACGATCAAAATTGGAATGCAAACCTGTCGTCTTCGT
CTAAAGATCCAGCCATGAAACGGACTCAAAGTGCGCCTGGTAAAAAAGCA
CATAACAACAACCAAAGaaatgGAGCTGCACCCACCCGAAGCCATTCCCA
TTCGAGTTCCAAAGGCTACACGGTCGATAAAAACACGCCAGCATTGAACG
CAAGACTTGTACCCAATGCCCAAACTGGTAAAAGTTATCAAATCACTGAT
CTGTAATATCCCTTGATCGGTCATCAGCGAGACGACCAGTGAAAATTGGT
ATCGAAGACCTCAAAAAGAGGATGTGCAGCAGGTGTACCTCCTGTTTGGC
TCGAAAGTTATTTCTCCATTACCAGTCAAGCATACGAAAATTCATCAACA
AGACTTTCGTAGGTGTTTTTGGAGTTCAAAAGCTATACCATCCCAGTCGA
TTCcttgtaaaattgttccattcgaAATGTATCAAGATATCATCGCAAGT
TTTACACGCCCGCCTTCAAAACACAAAAGGATTCGGTGGTTCGCTACTAC
CTACCTAAATCCTCTAAAAGGTGTactaaaattgtattttgatgGCTtgc
ttttaatgaaatttcatttttggacTGAGTGACGTCGCAGACTTTTAGAC
GGTGCTAAAACATTATTAGAAATATTATTAAGAATATATAAATATGAAGA
ATTGATAATACGAAACCGGAtaaaacttttatattttgaaaattaattta
atattttttttgtaacaataacattttactttaaattgGTTTATAATTCT
TGATGtcttttctttttagattttcataCACATACCTTTTTTGTATTTAT
CGATTTTTATACCACCCCCACCCTTCCTCCTCACCcattttttctttatc
tacCCCGTTCTAGCTTCTCGCcttctttttcttaaaaatattgacTCATC
GAGGTGTTTATTTGTTTTTCCGAAACCTTAGCACAGCACAGTGGATATAG
ACCCAAGATTCATATTGGGAGCTTGGAGTTTAAGAAATCCTAATTTTATT
CGGGACTGAAATTGTATAGAGAATATCctgattttattttaataaaattt
gttagtatattttaaattttacttaattttgttgtttttgtgcgtttttt
tttttgataagtttttccttttttaatttttaaacttGTATAAATATTAG
AAAATTCCAAATACTGAAAAAGTGTGTCAATAAATG
Run BLAST on NCBI

transcript from alignment at scaffold_458:145172..149839+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066669 ID=TCONS_00066669|Name=TCONS_00066669|organism=Clytia hemisphaerica|type=transcript|length=4668bp|location=Sequence derived from alignment at scaffold_458:145172..149839+ (Clytia hemisphaerica)
TTTCTAACTAGCttacaaatgataaaaaaaatacataGCTGTATTAAGAA
AAAGGCAATATTGACATCTGATCGGACAAGAGTAAGCACTATAGGCGGTG
GAAAGTCCTTTCTTTGGACTGCTTTCTTACGTAAATACTTTTTATAAAGA
TGGAGCGAAGATTTGACCGAATGAGACAGATTCAAACTGTTGGGTTTAGC
ACACTTATGATCATGCAACTTAGACCGTGCTATGATTTGTTTAACCTTCG
AGGTCCGTTTCTATACGTCCGTCGCTATAACATTTGTTTCAAAATACCTT
TTTTTACCACACAATTACAGTCCTACAACGAATATTCGTTTGTGAAGGTA
TTCAGATGAATTGGGATTagttttactattttttttgTTACTTCTTGTCA
TTTAAAACTAACTTTAGGAATAgtaattcttaaaattttgagagaaaagg
TTTGCTGTCTTTCCTAgagcaatttttgaaaaatatttggtaAAATAGCT
CTGCAACTTAACAAAAACCAAGTTTATTGTTATAACGAACACGCATTATA
TTCTCCCTTTCACCTTTCAGATGAATTGGGATTagttttactattttttt
tgTTACTTCTTGTCATTTAAAACTAAGTTTAGGAATAgtaattcttaaaa
ttttgagagaaaaggTTTGCTGTCTTTCCTAgagcaatttttgaaaaata
tttggtaAAATAGCTCTGCAACTTAACAAAAACCAAGTTTATTGTTATAA
CGAACACGCATTATATTCTCCCTTTCACCTTTCAGATGAATTGGGATTag
ttttactattttttttgTTACTTCTTGTCATTTAAAACTAAGTTTAGGAA
TAgtaattcttaaaattttgagagaaaaggTTTGCTGTCTTTCCTAgagc
aatttttgaaaaatatttggtaAAATAGCTCTGCAACTTAACAAAAACCA
AGTTTATTGTTATAACGAACACGCATTATATTCTCCCTTTCACCTTTCAC
AGGTTATATTCGTATTGGTTCAAACGTGTGGGCGAGGGCGGTCAACGGTG
ACTATTACAGAGGCGTGGTGACCGCACTGACAGATAAAGTTCACGTCAAG
TTCGAAGATGGCGAAACCATATCTCATGAAAGgtatttcttcaaattttt
gaataGAGATAATTTGCCTTTTTGGTTTTTGTGATTCGCTGATCCACCTC
AATTATGTAAGAGGGCAAGTAATATAGCAaccataaatttttttcttctg
aatTTGAAGTCATTTAAGTTCCGTTAACAGTCATCGTAATGGAAAGTTTC
TATTAATTacaaattattacaatatgtttaaaaaatgTACTCACACATAA
TACTTTTACGAGACTCACTAAACTTTTGTTTtctaatgaatgaatgaatg
gaaCCTCGATTCACTCACAATGACAGAGTATATTCTATTCGTATACTGTG
ATATTCATGGTACTTAAAACAATACGCTAATAGAAAAGGAAAGTCCCGGA
GAAAAGTTAAAACTTAATAGACAGAAGACCTTTCGAAGCCTCATAATCAA
TTCTCGTTTTTATGCTTAACTTGCAATTTTCACTTTTCTTAGGAAAGAAG
AGGAGGCTTTGGTATATGATATGGCTCCTAATccaaatgaaatcaaaatt
ggtACACGAGTTATTGCTCATTGGTCAGGCGTGGCAGCCTATCTACCTGG
CGCTGTTACCAAGATTGAAGGCAATAAATATCAAGTGCTGTACGACGATG
GTGATAGGTTAGGAAACCGGTTGGAAcaaatgagaattttaaaacCACCC
CTCTATTTTGGTAAGTTGATAACacgtacatgtttttttctttttataag
cataactttTGTAAGCATATTGACACCTGGATTCGTTAAAAAAAAGCCTA
TCATAAGCATATCAGTGAGCTTTGGTCATTGGTCATTGGTCATTGGTCAT
TAGCCATTAGGACTGTGTACTTGGGaagattgatttttttcttttccatt
ttaaattcgtctttttttctttttcagaagaaTAAGAATATCACAAGCGT
GATTTGAGCTTAAATTTAAAATACAAGCTAAGCATAACTGCacctgtttt
tcaaaaaaagtatgcttataaaaaacatgtacaataTCGCTGAGCATTAA
AAAATGTATTGTTAGTTTTGCTTCTTTGAGTTTATTTTGTTACCGAAACG
TATTCCTCGTACTACCAATCAGTATCAAATTTACTCCCTTAATGCTCATA
TATCCTTTATCAGTCGTACaattttaaacgtcaattttcTGTCATTTTAC
CTACTATAGGGCCTGGATCGGGACGCTCAAACTTACAAAAGAAATACTCG
ATGAAAACAACCGCTCTGATTGGTTCATCGTCTACATCGGAGGATGGTCC
AAAACGGTCCGCATCGGTCGACATCAACCGCGCGCGCACGCCTCGAACGC
CTGCTGATGATGATGCATTCTTCCCTGATCGCAAAGGAAGCCCTCAGGTA
CCGCGCAGTAAGTCATCGCCGGCAATTACGAACCGTAATGCGCCCGCGGG
CGGTGGCGGTTCTTTAAAATCGGACGATCAAAATTGGAATGCAAACCTGT
CGTCTTCGTCTAAAGATCCAGCCATGAAACGGACTCAAAGTGCGCCTGGT
AAAAAAGCACATAACAACAACCAAAGGTATGGGTATTTTCGATCGATACT
CATCTCCTTAAAAAAATACACTTTGCACTAAACTTTCTGATattataact
tttgaaaattctacCAATGCAGTCTCAGCACATCAAACTTATTCCTGAtc
ataaaagaataaaaaaatttctagctgTCCCATATATCATATATCACCAT
ATTTTTCTAGAAAGCTTTAaaccatttttatttgaatgcGATAATCGATC
CTTGCATAGTCTAGCAACACAATACTGCCAACTGCTCTATCTCGTTTGGT
CTCAGATAAGGATTCGATCGAGATAGTTTCGGTGGCAAGCTTCGAAACGA
TCAGTAGTGTCTGTGTTCATATTTCAGTCTATTTTGCTCTGTCCCAATCG
TATCTTTATATTTgaatcttttcattttcaagaaatgGAGCTGCACCCAC
CCGAAGCCATTCCCATTCGAGTTCCAAAGGCTACACGGTAAGCTTTTAGT
TCCTTTCttcctttattttttctttgccaGGCTAACTTTGGATGAATAAT
AATTTGTTTTTACAATGACCTTTGATTGTGGTTTTCATTACTTAACTGAG
ATTCCAGATATTGTCTCATTAAATCACCAGACTACGAGGacgggctcttc
cagaaaatgtccgtacatgggggtggaggatatagtgtccgggggtagtg
aaaaatctataAAGTTTGCCTTGCCtagggggtaaacttgctctgtttga
ggacAATTTTGATTGTTCATGGGGTCAgctaatgcttgtccgggggctag
acctgctgtccgggggtcaaaagtcacaatgtccgggggtaaatttccaa
aaaatgttatatcctccatcccccatACTCAAATTCTTTCTAAACTCTTC
ACTCTTACTCTCAAAAGAACATCGACTCAATAATCTATTTTCTACACTTT
ACAGGTCGATAAAAACACGCCAGCATTGAACGCAAGACTTGTACCCAATG
CCCAAACTGGTAAAAGTTATCAAATCACTGATCTGTAATATCCCTTGATC
GGTCATCAGCGAGACGACCAGTGAAAATTGGTATCGAAGACCTCAAAAAG
AGGATGTGCAGCAGGTGTACCTCCTGTTTGGCTCGAAAGTTATTTCTCCA
TTACCAGTCAAGCATACGAAAATTCATCAACAAGACTTTCGTAGGTGTTT
TTGGAGTTCAAAAGCTATACCATCCCAGTCGATTCcttgtaaaattgttc
cattcgaAATGTATCAAGATATCATCGCAAGTTTTACACGCCCGCCTTCA
AAACACAAAAGGATTCGGTGGTTCGCTACTACCTACCTAAATCCTCTAAA
AGGTGTactaaaattgtattttgatgGCTtgcttttaatgaaatttcatt
tttggacTGAGTGACGTCGCAGACTTTTAGACGGTGCTAAAACATTATTA
GAAATATTATTAAGAATATATAAATATGAAGAATTGATAATACGAAACCG
GAtaaaacttttatattttgaaaattaatttaatattttttttgtaacaa
taacattttactttaaattgGTTTATAATTCTTGATGtcttttcttttta
gattttcataCACATACCTTTTTTGTATTTATCGATTTTTATACCACCCC
CACCCTTCCTCCTCACCcattttttctttatctacCCCGTTCTAGCTTCT
CGCcttctttttcttaaaaatattgacTCATCGAGGTGTTTATTTGTTTT
TCCGAAACCTTAGCACAGCACAGTGGATATAGACCCAAGATTCATATTGG
GAGCTTGGAGTTTAAGAAATCCTAATTTTATTCGGGACTGAAATTGTATA
GAGAATATCctgattttattttaataaaatttgttagtatattttaaatt
ttacttaattttgttgtttttgtgcgtttttttttttgataagtttttcc
ttttttaatttttaaacttGTATAAATATTAGAAAATTCCAAATACTGAA
AAAGTGTGTCAATAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041703XLOC_041703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066669-exon-scaffold_458-1491911889:145172..145423TCONS_00066669-exon-scaffold_458-1491911889:145172..145423Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1510915933:145172..145423TCONS_00066669-exon-scaffold_458-1510915933:145172..145423Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1575043694:145172..145423TCONS_00066669-exon-scaffold_458-1575043694:145172..145423Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1491911889:146174..146303TCONS_00066669-exon-scaffold_458-1491911889:146174..146303Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1510915933:146174..146303TCONS_00066669-exon-scaffold_458-1510915933:146174..146303Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1575043694:146174..146303TCONS_00066669-exon-scaffold_458-1575043694:146174..146303Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1491911889:146764..146981TCONS_00066669-exon-scaffold_458-1491911889:146764..146981Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1510915933:146764..146981TCONS_00066669-exon-scaffold_458-1510915933:146764..146981Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1575043694:146764..146981TCONS_00066669-exon-scaffold_458-1575043694:146764..146981Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1491911889:147481..147847TCONS_00066669-exon-scaffold_458-1491911889:147481..147847Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1510915933:147481..147847TCONS_00066669-exon-scaffold_458-1510915933:147481..147847Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1575043694:147481..147847TCONS_00066669-exon-scaffold_458-1575043694:147481..147847Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1491911889:148254..148308TCONS_00066669-exon-scaffold_458-1491911889:148254..148308Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1510915933:148254..148308TCONS_00066669-exon-scaffold_458-1510915933:148254..148308Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1575043694:148254..148308TCONS_00066669-exon-scaffold_458-1575043694:148254..148308Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1491911889:148776..149839TCONS_00066669-exon-scaffold_458-1491911889:148776..149839Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1510915933:148776..149839TCONS_00066669-exon-scaffold_458-1510915933:148776..149839Clytia hemisphaericaexon
TCONS_00066669-exon-scaffold_458-1575043694:148776..149839TCONS_00066669-exon-scaffold_458-1575043694:148776..149839Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:145172..149839 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.263715	0.899528	1.36411	0	0.35951	0.203796	0.352753	0.440851	0.372722	0.328331	1.30597	0.665216	2.4993	0.903244	0.237777	18.1208	17.0749	2.46896	1.52896	7.72081	8.12939	2.00185	4.33143	0.446377	0.155291	13.2878	9.59082	3.64502	1.62338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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