TCONS_00066710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066710
Unique NameTCONS_00066710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066710 ID=TCONS_00066710|Name=TCONS_00066710|organism=Clytia hemisphaerica|type=transcript|length=570bp
TTGGTACCCATGGTTAAACCCTCAATGTACATTTCATCAGGTCTACTTAC
AGTTGGCTGGATGAAATTTTCTTAGTTCAAAATTGAGATGAGAATCAAGT
GAATACAATTGTTCTCTATAGTTTTCTTTCCTGACCAGCCATCTTGTGAC
CAactattttgaccattttgtggtTATTTTTGACCATCTTTCTATTCTTC
TATGAAAtatggtgtttttgagtccataaagccttaaaatgttcttaact
tgtacTTAACATTTTGTCTATTGAAGCCTTATtgtcttatatagtttgtt
cttataaaaaaataattggaATCATCTAACAACCACTCTAGTAGTTATTG
AAACGATACCTTGAGTAGCTTCACCACGGAATTGAATATTGTTTTGTTTA
GTTCATCATCATCGGAAAGAGTCGTGTTTGATATCCCGAATAAAGAtaga
tacacccctgtgtcacagacccgctgggactcagccccactggaaagttT
AGCGAAAATTTCGTCCTCAGTGGGCAAaaaccctggaatttcagccccac
tgggaaattcaatgtttaaa
Run BLAST on NCBI

transcript from alignment at scaffold_458:90016..90585

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066710 ID=TCONS_00066710|Name=TCONS_00066710|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at scaffold_458:90016..90585 (Clytia hemisphaerica)
tttaaacattgaatttcccagtggggctgaaattccagggtttTTGCCCA
CTGAGGACGAAATTTTCGCTAaactttccagtggggctgagtcccagcgg
gtctgtgacacaggggtgtatctaTCTTTATTCGGGATATCAAACACGAC
TCTTTCCGATGATGATGAACTAAACAAAACAATATTCAATTCCGTGGTGA
AGCTACTCAAGGTATCGTTTCAATAACTACTAGAGTGGTTGTTAGATGAT
tccaattatttttttataagaacaaactatataagacaATAAGGCTTCAA
TAGACAAAATGTTAAgtacaagttaagaacattttaaggctttatggact
caaaaacaccataTTTCATAGAAGAATAGAAAGATGGTCAAAAATAacca
caaaatggtcaaaatagtTGGTCACAAGATGGCTGGTCAGGAAAGAAAAC
TATAGAGAACAATTGTATTCACTTGATTCTCATCTCAATTTTGAACTAAG
AAAATTTCATCCAGCCAACTGTAAGTAGACCTGATGAAATGTACATTGAG
GGTTTAACCATGGGTACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041716XLOC_041716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066710-exon-scaffold_458-1491911889:90016..90585TCONS_00066710-exon-scaffold_458-1491911889:90016..90585Clytia hemisphaericaexon
TCONS_00066710-exon-scaffold_458-1510915933:90016..90585TCONS_00066710-exon-scaffold_458-1510915933:90016..90585Clytia hemisphaericaexon
TCONS_00066710-exon-scaffold_458-1575043694:90016..90585TCONS_00066710-exon-scaffold_458-1575043694:90016..90585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:90016..90585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.105935	0.111273	0	1.19278	0.418911	0.381539	0.828009	0.420821	0.213851	0.202821	0.332376	0.392163	0.135755	0.167414	0.242256	0.295103	0.151235	0.10447	0.21864	0.570115	0.139041	0.112682	0	0.21103	0.188339	0.134756	0.324521	0.327237	0.444537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top