TCONS_00066715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066715
Unique NameTCONS_00066715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066715 ID=TCONS_00066715|Name=TCONS_00066715|organism=Clytia hemisphaerica|type=transcript|length=820bp
AACACGTAAACAACAAATAAATTTATAACATCAAAGCacaatattttcta
ttttgaacTATACAAAACTTAGGAAAGACCCACAacagtaaatttatttt
tcaataatgGGGGAAATGAAACATTATTCTGCTATACAAATCAACCGTAT
AAATATCACAACCACAGCAAAAACCAAAAGCATGAGCAATTCAAAATTAA
TGACACTAGCAGAATAATGTAATGTCTGTTAAATGACTGCTTGGAAGCGA
TACTTAATTTTCTTGTGCTCTTTAAATAGAAAGCTACGTCAGGGTGAAAA
CATCTCAAATAAACACTTGAGGTAATAGTCACTTACATCATCATCATTCA
TTGCAGTGACATAAAAATTGGACAAATGATATATACAGTCTATTTAGACT
AGATGTTTACTTTAGTGATTCTATGAATTTTAGCAACATACTTGTACGGT
CGTAGTTTGTACATCTCCCTTCAGATTGAGAGGGGGCAGACCTAACCCCA
TTTGTACTGTGAACTGGCTTAGCTAGGTCTATAGTCCAGTCTGTTCGCAG
TCTTATATCCCATAAATTTTGCCTTTTATTAAACTCtggagaatattttt
gaaaaatataacattattCACTTTTTGTATCACATAGCCATAGACAGATC
TGTATGACACATGAACAATCCTGTACTATTTTACCAGTTGTATTTCACCT
TGCCTTGACCCTGCCATATGAATAATTTGTAAACCATAGCAGTTACTCGA
ATCTAATTTCACGTTACCATAATCTGTCAACAAAACATAGCAAATAACAC
TAAAGTACTCTAACTCAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_458:130143..130962

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066715 ID=TCONS_00066715|Name=TCONS_00066715|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_458:130143..130962 (Clytia hemisphaerica)
TCTTGAGTTAGAGTACTTTAGTGTTATTTGCTATGTTTTGTTGACAGATT
ATGGTAACGTGAAATTAGATTCGAGTAACTGCTATGGTTTACAAATTATT
CATATGGCAGGGTCAAGGCAAGGTGAAATACAACTGGTAAAATAGTACAG
GATTGTTCATGTGTCATACAGATCTGTCTATGGCTATGTGATACAAAAAG
TGaataatgttatatttttcaaaaatattctccaGAGTTTAATAAAAGGC
AAAATTTATGGGATATAAGACTGCGAACAGACTGGACTATAGACCTAGCT
AAGCCAGTTCACAGTACAAATGGGGTTAGGTCTGCCCCCTCTCAATCTGA
AGGGAGATGTACAAACTACGACCGTACAAGTATGTTGCTAAAATTCATAG
AATCACTAAAGTAAACATCTAGTCTAAATAGACTGTATATATCATTTGTC
CAATTTTTATGTCACTGCAATGAATGATGATGATGTAAGTGACTATTACC
TCAAGTGTTTATTTGAGATGTTTTCACCCTGACGTAGCTTTCTATTTAAA
GAGCACAAGAAAATTAAGTATCGCTTCCAAGCAGTCATTTAACAGACATT
ACATTATTCTGCTAGTGTCATTAATTTTGAATTGCTCATGCTTTTGGTTT
TTGCTGTGGTTGTGATATTTATACGGTTGATTTGTATAGCAGAATAATGT
TTCATTTCCCCcattattgaaaaataaatttactgtTGTGGGTCTTTCCT
AAGTTTTGTATAgttcaaaatagaaaatattgtGCTTTGATGTTATAAAT
TTATTTGTTGTTTACGTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041721XLOC_041721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066715-exon-scaffold_458-1491911889:130143..130962TCONS_00066715-exon-scaffold_458-1491911889:130143..130962Clytia hemisphaericaexon
TCONS_00066715-exon-scaffold_458-1510915933:130143..130962TCONS_00066715-exon-scaffold_458-1510915933:130143..130962Clytia hemisphaericaexon
TCONS_00066715-exon-scaffold_458-1575043694:130143..130962TCONS_00066715-exon-scaffold_458-1575043694:130143..130962Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:130143..130962 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174195	0.0566226	0.262977	0.128641	0	0	0.0746518	0.0698881	0	0.363648	0	0	0.0772345	0.0401044	0	0	0	0.0446775	0	0.0645902	0.0561406	0.1643	0.0665762	0.24211	0.498735	0.278193	0.398094	0.339885	0.386686	0.722282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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