TCONS_00066718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066718
Unique NameTCONS_00066718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length803

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066718 ID=TCONS_00066718|Name=TCONS_00066718|organism=Clytia hemisphaerica|type=transcript|length=803bp
ACTATTTTAGGCGTGACAAAATCCTCCAGTAACAATGATGTCAACAAAGC
TTTCAGATATCTTTGTTTGAAGCACCACCCTGATAAAGGAGGCGATGCTT
CAGATTTTATCATCCTGCAAACACATATGGCAAACATTAAACGTGCAAGG
GGAGAATTTTAGGtattttaacttgttcttttcATTATCAAGTAATTTTT
ATTCCAAATATTTACAGTAATTCATACATTATTTTCTATATAAAAACTTA
GTTACTTTTTCCTTTCTTCTAACATTCAGATTTTATATAAAATGCAAAGC
TTGCCCTCAAAATGTTATACCTACATTaaagaagtttgttaaaattCCAT
TAAATCATGAATGGTCTTATCTATAATATTTATGACATCAGCTGACGCTT
TCTAGttcgattttcaaaagaaattgaattttcatcgaataagggagcgt
atcaaaTAGGGAAACGTTCGTTTATGAGATTTTTTGTTGACGGTAacttt
ttcaatattatcgaataatggagcgttaTCAAAATGTAGAACGTCGAATC
AAAAAGGGTCAACTGAAATTGCCAAAAATACCATTTCAGTTAGCCTTTTT
TATCTCATGGGGTAAGAAGATTAACTTTTGAGCCCCGGACAACCCGAACG
TATCCCCGTACATCCAAAATTATTCAACTTCtgtcaaaaatattaaattt
tttaaacttaagTCTTAAGCCTAAGTATGGAAAGAATAGGCAAGATTAAA
TGCTTAACGAATCAAATGTcaattactcttaggtgccaaataaatgcccc
ccc
Run BLAST on NCBI

transcript from alignment at scaffold_458:196922..197724

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066718 ID=TCONS_00066718|Name=TCONS_00066718|organism=Clytia hemisphaerica|type=transcript|length=803bp|location=Sequence derived from alignment at scaffold_458:196922..197724 (Clytia hemisphaerica)
gggggggcatttatttggcacctaagagtaattgACATTTGATTCGTTAA
GCATTTAATCTTGCCTATTCTTTCCATACTTAGGCTTAAGActtaagttt
aaaaaatttaatatttttgacaGAAGTTGAATAATTTTGGATGTACGGGG
ATACGTTCGGGTTGTCCGGGGCTCAAAAGTTAATCTTCTTACCCCATGAG
ATAAAAAAGGCTAACTGAAATGGTATTTTTGGCAATTTCAGTTGACCCTT
TTTGATTCGACGTTCTACATTTTGAtaacgctccattattcgataatatt
gaaaaagtTACCGTCAACAAAAAATCTCATAAACGAACGTTTCCCTAttt
gatacgctcccttattcgatgaaaattcaatttcttttgaaaatcgaaCT
AGAAAGCGTCAGCTGATGTCATAAATATTATAGATAAGACCATTCATGAT
TTAATGGaattttaacaaacttctttAATGTAGGTATAACATTTTGAGGG
CAAGCTTTGCATTTTATATAAAATCTGAATGTTAGAAGAAAGGAAAAAGT
AACTAAGTTTTTATATAGAAAATAATGTATGAATTACTGTAAATATTTGG
AATAAAAATTACTTGATAATgaaaagaacaagttaaaataCCTAAAATTC
TCCCCTTGCACGTTTAATGTTTGCCATATGTGTTTGCAGGATGATAAAAT
CTGAAGCATCGCCTCCTTTATCAGGGTGGTGCTTCAAACAAAGATATCTG
AAAGCTTTGTTGACATCATTGTTACTGGAGGATTTTGTCACGCCTAAAAT
AGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041724XLOC_041724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066718-exon-scaffold_458-1491911889:196922..197724TCONS_00066718-exon-scaffold_458-1491911889:196922..197724Clytia hemisphaericaexon
TCONS_00066718-exon-scaffold_458-1510915933:196922..197724TCONS_00066718-exon-scaffold_458-1510915933:196922..197724Clytia hemisphaericaexon
TCONS_00066718-exon-scaffold_458-1575043694:196922..197724TCONS_00066718-exon-scaffold_458-1575043694:196922..197724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:196922..197724 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.132323	0.080545	0.0636477	1.61255	2.51609	2.31521	3.55353	1.14971	0.715999	3.09835	1.11381	11.5311	7.0244	1.92798	2.11398	2.98407	3.65413	0.173242	0.507008	0.890261	1.61875	3.97582	4.63571	7.61645	7.16705	2.71798	1.89115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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