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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066722 ID=TCONS_00066722|Name=TCONS_00066722|organism=Clytia hemisphaerica|type=transcript|length=2575bpRun BLAST on NCBI protein sequence of TCONS_00066722-protein >TCONS_00066722-protein ID=TCONS_00066722-protein|Name=TCONS_00066722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp MEQIKDKVTDLVKEFATSVDEDIEMLDTNGVVLKFASNAPVETVQWICKLRun BLAST on NCBI transcript from alignment at scaffold_459:111476..126401+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066722 ID=TCONS_00066722|Name=TCONS_00066722|organism=Clytia hemisphaerica|type=transcript|length=14926bp|location=Sequence derived from alignment at scaffold_459:111476..126401+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_459:111476..126401+ >TCONS_00066722 ID=TCONS_00066722|Name=TCONS_00066722|organism=Clytia hemisphaerica|type=CDS|length=24192bp|location=Sequence derived from alignment at scaffold_459:111476..126401+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066722 vs. Swiss-Prot (Human)
Match: ANO10 (Anoctamin-10 OS=Homo sapiens GN=ANO10 PE=1 SV=2) HSP 1 Score: 431.795 bits (1109), Expect = 5.891e-139 Identity = 254/638 (39.81%), Postives = 399/638 (62.54%), Query Frame = 3
Query: 177 VVLKFASNAPVETVQWICKLIEKPVLSGGAELS----LKHYEVDGDEDSQIFIISANSTQLVKAADQFNLMKQTHEGIIKAXXXXXXXXXXXXXXXXXXXXSCSEQQYLIKCMLNNVISDDEEIKHVPGYPKVKVYKSRPVIPRCRAKKI-IDVYPLHDLDNLKGLKNKWYSDYTKFTQPLEEIKKYFGESITLYFSFLEYYTKYLIPPAIVGFFHSWFFVWDSTDTDNILFAVMNVIWATVFLELWKRKGASIVHSWGRLDTHTETSTILEKPRAEYKGHPRVSPITGLLEPYYPTWRRRLKMYLVTYPVLVLSLLFAAIGMWFYFEFKEKLMAWNKG---SSGGLLNKMLMKIPGVVYASIIFGLNNLYGKLAVIMNDWENHRIQSSYNNHLIVKLVLFYFVNSFLSLFYIAFYLQDMAMLKXXXXXXXXXXXXXXXXXESVFPYMKFKRHNIKVEKTSVGLVKFKKIRDPKNQVSREGNLPEYSTTFQDYLELFLQFGYVFLFSAVYPLAAFWAVLNNLVEMKTDAFKLCNLHQRPFIQPASSIGAWQIAFEVMSIIAVMTNCALIAMSPSIRSWLSMETNPIHYVICFVAIEHVVILVKIAITYMIPDIPGDIKKVIAKQQYQRNQRIKEKELQ 2066
VV++ A + ET +W+ I GGA+L L YE + E+ ++++ A+ +++ A+ L+K+ ++ ++AF + R +F+ F++NN DF + +E Q++IK L N+ + DE K +PGYP+ K+Y + ++ R I I V+PLHD + LK L++ WY+ + QP++ I+ YFGE+I LYF FLEY+T LIP A++G + + FVW+ D ++FA N+IW+TV LELWKR A++ + WG L + E+PR + G ++ ITG EP YP+++R+L++YLV+ P + L L F+ M YF+ + W G +SG +L+ +P ++YA +I +N LY A + WENHR++S+Y NHLI+K+++F F+N F SLFYIAF L+DM +L+Q LATLLIT QI+ Q+ ES PY ++H ++V K V +K QV E + Y TF DYLELFLQFGYV LFS VYPLAA +AVLNN E+ +DA K+C + +RPF +P+++IG WQ+AFE MS+I+V+TNCALI MSP + + + ++ VA+EH ++ +K + + IPD P I+ +A+ +++ + +K+++++
Sbjct: 19 VVIELAQDVKEETKEWLKNRIIAKKKDGGAQLLFRPLLNKYEQETLENQNLYLVGASKIRMLLGAEAVGLVKECNDNTMRAFTYRTRQNFKGFDDNNDDFLTMAECQFIIKHELENLRAKDE--KMIPGYPQAKLYPGKSLLRRLLTSGIVIQVFPLHDSEALKKLEDTWYTRFALKYQPIDSIRGYFGETIALYFGFLEYFTFALIPMAVIGLPY-YLFVWEDYD-KYVIFASFNLIWSTVILELWKRGCANMTYRWGTLLMKRK----FEEPRPGFHGVLGINSITGKEEPLYPSYKRQLRIYLVSLPFVCLCLYFSLYVMMIYFDME----VWALGLHENSGSEWTSVLLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLILKVLVFNFLNCFASLFYIAFVLKDMKLLRQSLATLLITSQILNQIMESFLPYWLQRKHGVRV-KRKVQALKADIDATLYEQVILEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNFTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNA--VFPESKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMK 641 The following BLAST results are available for this feature:
BLAST of TCONS_00066722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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