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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066725 ID=TCONS_00066725|Name=TCONS_00066725|organism=Clytia hemisphaerica|type=transcript|length=659bp
CGCCAGAGTTCATTCAGAGTGGTGTTTTCAAGAGGGGAAGTTGCAAAAAG
TCTACGAAACCAACAACCAGCTCGCAGATTGTTTCTTTGGACTTTCCTCG
CCACTGAGAACGTATCAACTTCCAAAGCATACATCAACAACCAAATGGAC
AATAAATATAAGTATTTTCGCTAGCATATTTATTTTGATCGATAATTTCA
CTTTGAGTTAGTGTAATaaccagaaaaaagttttttattagtACGTTTTA
ATCCAGTCATACATATTTAgcatcaacaaatttatacaaGCACACTTGTT
TGATTTGACGTTTTAAGACGGGCGAAATCTTCTAAAGAACTACCCTTTTG
GAGGGTCGGTTCGGTGCTAGTATTTTTCTGTCCTTTTGAAAATGAGAGTT
TTTTATTGATTGATGACATCACTTTACATCAAAGCACGTAATTGACATAT
TTGTTGAcaaatcaaaaacaattcaTCACATTTCACGCCTTCATGTCCCA
AAGtgTCGCGTTTCAGCTGGCTTCTGGATAATTGTTCCATCAAAATTGGT
CAACAAGTTCCTGCAATCACAATGAGATTTATATCAAATCCTCGAATTAT
ATGCATATCTTCAGAGTCAATGTTATATATTGTATCAATAAATTTGAAAG
AGATTTAAT Run BLAST on NCBI transcript from alignment at scaffold_459:194923..196864+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066725 ID=TCONS_00066725|Name=TCONS_00066725|organism=Clytia hemisphaerica|type=transcript|length=1942bp|location=Sequence derived from alignment at scaffold_459:194923..196864+ (Clytia hemisphaerica)
CGCCAGAGTTCATTCAGAGTGGTGTTTTCAAGAGGGGAAGTTGCAAAAAG
TCTACGAAACCAACAACCAGGTAAATTTTCTTGTTAATTTCTAATTGTGA
AATAAAGGAAATTTTCTATTCTTTGAATTGACCAATTTGCTTTTTCAATT
GAAAAGTCTTTTAAGTTATAATTTTAACTAGGAAATGTTCAAGACTGACA
AAGTTTTCTCTATCTTAGCTCGCAGATTGTTTCTTTGGACTTTCCTCGCC
ACTGAGAACGTATCAACTTCCAAAGCATACATCAACAACCAAATGGACAA
TAAATATAAGTATTTTCGCTAGCATATTTATTTTGATCGATAATTTCACT
TTGAGTTAGTGTAATaaccagaaaaaagttttttattagtACGTTTTAAT
CCAGTCATACATATTTAgcatcaacaaatttatacaaGCACACTTGTTTG
ATTTGACGTTTTAAGACGGGCGAAATCTTCTAAAGAACTACCCTTTTGGA
GGGTCGGTTCGGTGCTAGTATTTTTCTGTCCTTTTGAAAATGAGAGTTTT
TTATTGGCAAGTTTTAATTCAGTCATACatattttgtattaaaaatttAT
GTAAGCACATTTGTTTGATTTGACGTTGTAAGACGGGCGAAATCTTAAGT
ACTATACTACTCTTTAGGATATGAGACTTCTTCTATATATTTGAAAGTTC
CGTTGCGTAGACTGAATTTATATCTGATTTTCTTTCAGATTGATGACATC
ACTTTACATCAAAGCACGTAATTGACATATTTGTTGAcaaatcaaaaaca
attcaTCACATTTCACGCCTTCATGTCCCAAAGGTAAAcaatataaaatt
aaatataaaaacCAAGTAATTGTTTTAATTGAATCAAGTAATTgcgaaaa
aaagaattatttaatatcatatttttttaaagtttaattttcaCGTCTAA
GTGAGAGTCGATCATCTACGCATAAATCTGTTTGCTTAAAACAATACACA
AATCCCTTAAAAATACAGGCGATTCATTTCAATTCTTTATCAACATTTTG
CCACGCAAACTTTCGGGTTGTTAAAATCTAATTTATAAAAGAAACTAAAC
AATCAAGTGACGTAACGcgggttcttttgttttgatgattggtcTGAATA
ACTGCAATGTTTTTGCAAGCTCTAGCATTTTTGaagcagcgattcagacc
tcAATAACAATGAAataatgtcaatctggcttNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAATACGTAAAGTGCAAGTAAACTTTTTCAGGTCTTTACGAAAATTCGG
TTtataattacacccctgtctcagtgactcgTTAAGATTTTGTGACCGGT
GGGGATGGAAAAGTAATAGCTGAATACCGATACATGGAGCGGAGAATCTC
TTTGTTTTTAACGAATGGGGATTTAAAATTCTATTTCTTACAGCTGAAAA
ATTCCACAAAAATATTACTGACTTTTCGAGTGAGCATAAGAGCCTAAGAG
GGTAAGAGTAGTGGGAATAAAATTTCAGGGGATATTTCCCATCAGAGACG
GATTTTCGGTCAATATTCCAAATGGATTTGGGATCCCACCCAAATTGTGA
GACGGAAgtgtaaaattgtttttatttttgttttagtgTCGCGTTTCAGC
TGGCTTCTGGATAATTGTTCCATCAAAATTGGTCAACAAGTTCCTGCAAT
CACAATGAGATTTATATCAAATCCTCGAATTATATGCATATCTTCAGAGT
CAATGTTATATATTGTATCAATAAATTTGAAAGAGATTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066725-exon-scaffold_459-1491911889:194923..194992 | TCONS_00066725-exon-scaffold_459-1491911889:194923..194992 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1510915933:194923..194992 | TCONS_00066725-exon-scaffold_459-1510915933:194923..194992 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1575043694:194923..194992 | TCONS_00066725-exon-scaffold_459-1575043694:194923..194992 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1491911889:195141..195478 | TCONS_00066725-exon-scaffold_459-1491911889:195141..195478 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1510915933:195141..195478 | TCONS_00066725-exon-scaffold_459-1510915933:195141..195478 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1575043694:195141..195478 | TCONS_00066725-exon-scaffold_459-1575043694:195141..195478 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1491911889:195661..195755 | TCONS_00066725-exon-scaffold_459-1491911889:195661..195755 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1510915933:195661..195755 | TCONS_00066725-exon-scaffold_459-1510915933:195661..195755 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1575043694:195661..195755 | TCONS_00066725-exon-scaffold_459-1575043694:195661..195755 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1491911889:196709..196864 | TCONS_00066725-exon-scaffold_459-1491911889:196709..196864 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1510915933:196709..196864 | TCONS_00066725-exon-scaffold_459-1510915933:196709..196864 | Clytia hemisphaerica | exon |
| TCONS_00066725-exon-scaffold_459-1575043694:196709..196864 | TCONS_00066725-exon-scaffold_459-1575043694:196709..196864 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_459 | supercontig | scaffold_459:194923..196864 + |
Blast
The following BLAST results are available for this feature:
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