TCONS_00066727 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066727
Unique NameTCONS_00066727
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066727 ID=TCONS_00066727|Name=TCONS_00066727|organism=Clytia hemisphaerica|type=transcript|length=893bp
GTTCATTCAGAGTGGTGTTTTCAAGAGGGGAAGTTGCAAAAAGTCTACGA
AACCAACAACCAGCTCGCAGATTGTTTCTTTGGACTTTCCTCGCCACTGA
GAACGTATCAACTTCCAAAGCATACATCAACAACCAAATGGACAATAAAT
ATAAGTATTTTCGCTAGCATATTTATTTTGATCGATAATTTCACTTTGAG
TTAGTGTAATaaccagaaaaaagttttttattagtACGTTTTAATCCAGT
CATACATATTTAgcatcaacaaatttatacaaGCACACTTGTTTGATTTG
ACGTTTTAAGACGGGCGAAATCTTCTAAAGAACTACCCTTTTGGAGGGTC
GGTTCGGTGCTAGTATTTTTCTGTCCTTTTGAAAATGAGAGTTTTTTATT
GATTGATGACATCACTTTACATCAAAGCACGTAATTGACATATTTGTTGA
caaatcaaaaacaattcaTCACATTTCACGCCTTCATGTCCCAAAGGTAA
AcaatataaaattaaatataaaaacCAAGTAATTGTTTTAATTGAATCAA
GTAATTgcgaaaaaaagaattatttaatatcatatttttttaaagtttaa
ttttcaCGTCTAAGTGAGAGTCGATCATCTACGCATAAATCTGTTTGCTT
AAAACAATACACAAATCCCTTAAAAATACAGGCGATTCATTTCAATTCTT
TATCAACATTTTGCCACGCAAACTTTCGGGTTGTTAAAATCTAATTTATA
AAAGAAACTAAACAATCAAGTGACGTAACGcgggttcttttgttttgatg
attggtcTGAATAACTGCAATGTTTTTGCAAGCTCTAGCATTTTTGaagc
agcgattcagacctcAATAACAATGAAataatgtcaatctggc
Run BLAST on NCBI

transcript from alignment at scaffold_459:194930..196152+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066727 ID=TCONS_00066727|Name=TCONS_00066727|organism=Clytia hemisphaerica|type=transcript|length=1223bp|location=Sequence derived from alignment at scaffold_459:194930..196152+ (Clytia hemisphaerica)
GTTCATTCAGAGTGGTGTTTTCAAGAGGGGAAGTTGCAAAAAGTCTACGA
AACCAACAACCAGGTAAATTTTCTTGTTAATTTCTAATTGTGAAATAAAG
GAAATTTTCTATTCTTTGAATTGACCAATTTGCTTTTTCAATTGAAAAGT
CTTTTAAGTTATAATTTTAACTAGGAAATGTTCAAGACTGACAAAGTTTT
CTCTATCTTAGCTCGCAGATTGTTTCTTTGGACTTTCCTCGCCACTGAGA
ACGTATCAACTTCCAAAGCATACATCAACAACCAAATGGACAATAAATAT
AAGTATTTTCGCTAGCATATTTATTTTGATCGATAATTTCACTTTGAGTT
AGTGTAATaaccagaaaaaagttttttattagtACGTTTTAATCCAGTCA
TACATATTTAgcatcaacaaatttatacaaGCACACTTGTTTGATTTGAC
GTTTTAAGACGGGCGAAATCTTCTAAAGAACTACCCTTTTGGAGGGTCGG
TTCGGTGCTAGTATTTTTCTGTCCTTTTGAAAATGAGAGTTTTTTATTGG
CAAGTTTTAATTCAGTCATACatattttgtattaaaaatttATGTAAGCA
CATTTGTTTGATTTGACGTTGTAAGACGGGCGAAATCTTAAGTACTATAC
TACTCTTTAGGATATGAGACTTCTTCTATATATTTGAAAGTTCCGTTGCG
TAGACTGAATTTATATCTGATTTTCTTTCAGATTGATGACATCACTTTAC
ATCAAAGCACGTAATTGACATATTTGTTGAcaaatcaaaaacaattcaTC
ACATTTCACGCCTTCATGTCCCAAAGGTAAAcaatataaaattaaatata
aaaacCAAGTAATTGTTTTAATTGAATCAAGTAATTgcgaaaaaaagaat
tatttaatatcatatttttttaaagtttaattttcaCGTCTAAGTGAGAG
TCGATCATCTACGCATAAATCTGTTTGCTTAAAACAATACACAAATCCCT
TAAAAATACAGGCGATTCATTTCAATTCTTTATCAACATTTTGCCACGCA
AACTTTCGGGTTGTTAAAATCTAATTTATAAAAGAAACTAAACAATCAAG
TGACGTAACGcgggttcttttgttttgatgattggtcTGAATAACTGCAA
TGTTTTTGCAAGCTCTAGCATTTTTGaagcagcgattcagacctcAATAA
CAATGAAataatgtcaatctggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041729XLOC_041729Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066727-exon-scaffold_459-1491911889:194930..194992TCONS_00066727-exon-scaffold_459-1491911889:194930..194992Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1510915933:194930..194992TCONS_00066727-exon-scaffold_459-1510915933:194930..194992Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1575043694:194930..194992TCONS_00066727-exon-scaffold_459-1575043694:194930..194992Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1491911889:195141..195478TCONS_00066727-exon-scaffold_459-1491911889:195141..195478Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1510915933:195141..195478TCONS_00066727-exon-scaffold_459-1510915933:195141..195478Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1575043694:195141..195478TCONS_00066727-exon-scaffold_459-1575043694:195141..195478Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1491911889:195661..196152TCONS_00066727-exon-scaffold_459-1491911889:195661..196152Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1510915933:195661..196152TCONS_00066727-exon-scaffold_459-1510915933:195661..196152Clytia hemisphaericaexon
TCONS_00066727-exon-scaffold_459-1575043694:195661..196152TCONS_00066727-exon-scaffold_459-1575043694:195661..196152Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_459supercontigscaffold_459:194930..196152 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228367	0	0	0	2.31313	0.229895	1.64281	0	2.2177	0	0	1.01205	0	0	0.136442	0.167262	0.488	0.423733	0	0	1.53642	0.106514	0	0.636326	0	0	0.306199	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top