TCONS_00066733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066733
Unique NameTCONS_00066733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066733 ID=TCONS_00066733|Name=TCONS_00066733|organism=Clytia hemisphaerica|type=transcript|length=1463bp
ATTAGTTATAAATATCTTAAAATTCAAAATGGTGAGAGTATTTGTTGTAA
CTGGATCAAACAAAGGCATTGGAAAATCAATAGTGAAGTTATTTTTGCAA
GATAAAGAGGAAAAGATTGTCTATCTCACTGCAAGAAATGAAGAGCTTGG
ATTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACCAAGGTTTC
ATCAACTAGATATTACGGATCAAAACAGTATTAATAGATTACGTGATCAT
CTTCAAAATGAGCATCTTGGCCTTGATGTTCTGGTCAATAATGCTGGAAT
GGCATACAAAGGATCAAGTACAGCTCCTTTTGCTGAACAAGCAGAAGTGA
CAAACAATTGCAACTTCTTTGGAACTGTGAACATATGTGAAGCGCTTTTT
CCCATCCTCAAACAAAATGGAAGAGTTGTTCTTGTTTCAAGTTTCACAAG
TGAGATGGCATACTCAGGCTTTTCCAAAGAACTTAAAGCTAAATTCACAG
ATCCAAATTTAAATATGGAagGATTGAAATTGTTAATTCATGATTTCGTT
ACCGCTGCAAAGGATAATCAACTAAAGGATCGTGGTTGGGTTGAATCTGC
ATATGCTACTTCAAAAGTTGGTGTTTCCTTTATGGGAATCTTGCAACAAA
AACAAGTAGATGCTGAATATCCTGATAAAAACATCCTGGTGAATTACTGC
TGTCCTGGTATAGTTGATACTGGAATGACCGGTGGGAGATATGAGGGAAT
GGTTTCCCCTGATGAAGGTGCTGATACTCCAACTTATTTAGCATTGATTT
CTGTTGATGCTAAAGAACCCAAGGGGCAATTTTGCAAATTGAGAAAAGTG
GTGCCATACCCTCCATCTgactgatttgatttgatttaatttgatttgat
ttggtttgatttttttaatgcaTTTATTTTTGTAGGGATACAGCTATTTA
ATATTTTGATACATAGGCATGATTTATTTTCTATTTAATTCCATTTCACA
TTTTACACAATTCACATTCACTTAGGATCTAGGTATATAATGTAAGCTGA
TTTTAaacttctttttggacctacctaaggtagtcctttaaattaaccct
tgtccgttcgttcgttcgtccgttcgttcgtccgttcgtctgttgccagc
ttttctcgggatcggctcattagttttttctaattttttgcacaatgatg
caaaatggCAATGCCCAAAATGTGACagagcccgattttcgaaaaaaaaa
tttccggccgaaaatggcggaaatatgctggaaaaactggtttttcggca
ttttctcgagatttcatcattagttttttctaattttttgctcaaacatg
cgtattaacaatgcccaaaacatggcctagtccgatttctgagaaaaaaa
tttttccggccgaaaatgccggaaatatgccggaaatcgccgtttttctg
gattttcattgga
Run BLAST on NCBI

protein sequence of TCONS_00066733-protein

>TCONS_00066733-protein ID=TCONS_00066733-protein|Name=TCONS_00066733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
LVINILKFKMVRVFVVTGSNKGIGKSIVKLFLQDKEEKIVYLTARNEELG
LQTVKEFEQNGLKPRFHQLDITDQNSINRLRDHLQNEHLGLDVLVNNAGM
AYKGSSTAPFAEQAEVTNNCNFFGTVNICEALFPILKQNGRVVLVSSFTS
EMAYSGFSKELKAKFTDPNLNMEGLKLLIHDFVTAAKDNQLKDRGWVESA
YATSKVGVSFMGILQQKQVDAEYPDKNILVNYCCPGIVDTGMTGGRYEGM
VSPDEGADTPTYLALISVDAKEPKGQFCKLRKVVPYPPSD
Run BLAST on NCBI

transcript from alignment at scaffold_459:84075..85832-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066733 ID=TCONS_00066733|Name=TCONS_00066733|organism=Clytia hemisphaerica|type=transcript|length=1758bp|location=Sequence derived from alignment at scaffold_459:84075..85832- (Clytia hemisphaerica)
ATTAGTTATAAATATCTTAAAATTCAAAATGGTGAGAGTATTTGTTGTAA
CTGGATCAAACAAAGGCATTGGAAAATCAATAGTGAAGTTATTTTTGCAA
GATAAAGAGGAAAAGATTGTCTATCTCACTGCAAGAAATGAAGAGCTTGG
ATTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACCAAGGTTTC
ATCAACTAGATATTACGGATCAAAACAGTATTAATAGATTACGTGATCAT
CTTCAAAATGAGCATCTTGGCCTTGATGTTCTGGTCAATAATGCTGGAAT
GGCATACAAAGGATCAAGTACAGCTCCTTTTGCTGAACAAGCAGAAGTGA
CAAACAATTGCAACTTCTTTGGAACTGTGAACATATGTGAAGCGCTTTTT
CCCATCCTCAAACAAAATGGAAGAGTTGTTCTTGTTTCAAGTTTCACAAG
TGAGATGGCATACTCAGGCTTTTCCAAAGAACTTAAAGCTAAATTCACAG
ATCCAAATTTAAATATGGAAGGTAATTTTTATGTTTTTGTGATTTTTGCT
TTTTGAATTTTGGTGTTTTTTTTACTATCTGGTCTTACATTTGAAAATCG
ATAGTCAAGTTACTACAGGATATTATCATCCTATAATTCATTTCTATTCA
TTAGAGATTAGTTTGAACTGTATGGTGGTTGAATTCCCTTTATTTTGAGA
TTCTGATTATAATATTGAATAAAAATTTTCCCTCCTCACATGAAAATTGA
AATTTGTTTGTTGCTATATTAGAGGTAGATTTCTAATAAAAGCCTTCTAA
CTTTTAAAAATTACAGGATTGAAATTGTTAATTCATGATTTCGTTACCGC
TGCAAAGGATAATCAACTAAAGGATCGTGGTTGGGTTGAATCTGCATATG
CTACTTCAAAAGTTGGTGTTTCCTTTATGGGAATCTTGCAACAAAAACAA
GTAGATGCTGAATATCCTGATAAAAACATCCTGGTGAATTACTGCTGTCC
TGGTATAGTTGATACTGGAATGACCGGTGGGAGATATGAGGGAATGGTTT
CCCCTGATGAAGGTGCTGATACTCCAACTTATTTAGCATTGATTTCTGTT
GATGCTAAAGAACCCAAGGGGCAATTTTGCAAATTGAGAAAAGTGGTGCC
ATACCCTCCATCTGACTGATTTGATTTGATTTAATTTGATTTGATTTGGT
TTGATTTTTTTAATGCATTTATTTTTGTAGGGATACAGCTATTTAATATT
TTGATACATAGGCATGATTTATTTTCTATTTAATTCCATTTCACATTTTA
CACAATTCACATTCACTTAGGATCTAGGTATATAATGTAAGCTGATTTTA
AACTTCTTTTTGGACCTACCTAAGGTAGTCCTTTAAATTAACCCTTGTCC
GTTCGTTCGTTCGTCCGTTCGTTCGTCCGTTCGTCTGTTGCCAGCTTTTC
TCGGGATCGGCTCATTAGTTTTTTCTAATTTTTTGCACAATGATGCAAAA
TGGCAATGCCCAAAATGTGACAGAGCCCGATTTTCGAAAAAAAAATTTCC
GGCCGAAAATGGCGGAAATATGCTGGAAAAACTGGTTTTTCGGCATTTTC
TCGAGATTTCATCATTAGTTTTTTCTAATTTTTTGCTCAAACATGCGTAT
TAACAATGCCCAAAACATGGCCTAGTCCGATTTCTGAGAAAAAAATTTTT
CCGGCCGAAAATGCCGGAAATATGCCGGAAATCGCCGTTTTTCTGGATTT
TCATTGGA

Coding sequence (CDS) from alignment at scaffold_459:84075..85832-

>TCONS_00066733 ID=TCONS_00066733|Name=TCONS_00066733|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_459:84075..85832- (Clytia hemisphaerica)
GATTGAAATTGTTAATTCATGATTTCGTTACCGCTGCAAAGGATAATCAA
CTAAAGGATCGTGGTTGGGTTGAATCTGCATATGCTACTTCAAAAGTTGG
TGTTTCCTTTATGGGAATCTTGCAACAAAAACAAGTAGATGCTGAATATC
CTGATAAAAACATCCTGGTGAATTACTGCTGTCCTGGTATAGTTGATACT
GGAATGACCGGTGGGAGATATGAGGGAATGGTTTCCCCTGATGAAGGTGC
TGATACTCCAACTTATTTAGCATTGATTTCTGTTGATGCTAAAGAACCCA
AGGGGCAATTTTGCAAATTGAGAAAAGTGGTGCCATACCCTCCATCTGAC
TGATTAGTTATAAATATCTTAAAATTCAAAATGGTGAGAGTATTTGTTGT
AACTGGATCAAACAAAGGCATTGGAAAATCAATAGTGAAGTTATTTTTGC
AAGATAAAGAGGAAAAGATTGTCTATCTCACTGCAAGAAATGAAGAGCTT
GGATTACAAACAGTCAAAGAATTTGAACAAAATGGTTTGAAACCAAGGTT
TCATCAACTAGATATTACGGATCAAAACAGTATTAATAGATTACGTGATC
ATCTTCAAAATGAGCATCTTGGCCTTGATGTTCTGGTCAATAATGCTGGA
ATGGCATACAAAGGATCAAGTACAGCTCCTTTTGCTGAACAAGCAGAAGT
GACAAACAATTGCAACTTCTTTGGAACTGTGAACATATGTGAAGCGCTTT
TTCCCATCCTCAAACAAAATGGAAGAGTTGTTCTTGTTTCAAGTTTCACA
AGTGAGATGGCATACTCAGGCTTTTCCAAAGAACTTAAAGCTAAATTCAC
AGATCCAAATTTAAATATGGAAGGATTGAAATTGTTAATTCATGATTTCG
TTACCGCTGCAAAGGATAATCAACTAAAGGATCGTGGTTGGGTTGAATCT
GCATATGCTACTTCAAAAGTTGGTGTTTCCTTTATGGGAATCTTGCAACA
AAAACAAGTAGATGCTGAATATCCTGATAAAAACATCCTGGTGAATTACT
GCTGTCCTGGTATAGTTGATACTGGAATGACCGGTGGGAGATATGAGGGA
ATGGTTTCCCCTGATGAAGGTGCTGATACTCCAACTTATTTAGCATTGAT
TTCTGTTGATGCTAAAGAACCCAAGGGGCAATTTTGCAAATTGAGAAAAG
TGGTGCCATACCCTCCATCTGACTGATTAGTTATAAATATCTTAAAATTC
AAAATGGTGAGAGTATTTGTTGTAACTGGATCAAACAAAGGCATTGGAAA
ATCAATAGTGAAGTTATTTTTGCAAGATAAAGAGGAAAAGATTGTCTATC
TCACTGCAAGAAATGAAGAGCTTGGATTACAAACAGTCAAAGAATTTGAA
CAAAATGGTTTGAAACCAAGGTTTCATCAACTAGATATTACGGATCAAAA
CAGTATTAATAGATTACGTGATCATCTTCAAAATGAGCATCTTGGCCTTG
ATGTTCTGGTCAATAATGCTGGAATGGCATACAAAGGATCAAGTACAGCT
CCTTTTGCTGAACAAGCAGAAGTGACAAACAATTGCAACTTCTTTGGAAC
TGTGAACATATGTGAAGCGCTTTTTCCCATCCTCAAACAAAATGGAAGAG
TTGTTCTTGTTTCAAGTTTCACAAGTGAGATGGCATACTCAGGCTTTTCC
AAAGAACTTAAAGCTAAATTCACAGATCCAAATTTAAATATGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041732XLOC_041732Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066733-proteinTCONS_00066733-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066733-exon-scaffold_459-1575043694:85312..85832TCONS_00066733-exon-scaffold_459-1575043694:85312..85832Clytia hemisphaericaexon
TCONS_00066733-exon-scaffold_459-1575043694:84075..85016TCONS_00066733-exon-scaffold_459-1575043694:84075..85016Clytia hemisphaericaexon
TCONS_00066733-exon-scaffold_459-1510915933:85312..85832TCONS_00066733-exon-scaffold_459-1510915933:85312..85832Clytia hemisphaericaexon
TCONS_00066733-exon-scaffold_459-1510915933:84075..85016TCONS_00066733-exon-scaffold_459-1510915933:84075..85016Clytia hemisphaericaexon
TCONS_00066733-exon-scaffold_459-1491911889:85312..85832TCONS_00066733-exon-scaffold_459-1491911889:85312..85832Clytia hemisphaericaexon
TCONS_00066733-exon-scaffold_459-1491911889:84075..85016TCONS_00066733-exon-scaffold_459-1491911889:84075..85016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_459supercontigscaffold_459:84075..85832 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
50.218	48.7728	59.9594	70.2419	54.2717	39.7314	35.5464	35.0493	27.3604	30.4104	20.8595	15.359	13.5676	11.8938	9.97632	11.4689	8.90562	7.86796	5.9438	9.96709	6.58961	6.79079	16.6752	15.7478	9.69632	12.0156	9.68059	7.04262	9.69385	11.51
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
[Close]
BLAST of TCONS_00066733 vs. Swiss-Prot (Human)
Match: CBR1 (Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CBR1 PE=1 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 1.950e-68
Identity = 124/277 (44.77%), Postives = 163/277 (58.84%), Query Frame = 2 
Query:   32 VRVFVVTGSNKGIGKSIVK----LFLQDKEEKIVYLTARNEELGLQTVKEFEQNGLKPRFHQLDITDQNSINRLRDHLQNEHLGLDVLVNNAGMAYKGSSTAPFAEQAEVTNNCNFFGTVNICEALFPILKQNGRVVLVSSFTSEMAYSGFSKELKAKFTDPNLNMEGLKLLIHDFVTAAKDNQLKDRGWVESAYATSKVGVSFMGILQQKQVDAEYPDKNILVNYCCPGIVDTGMTGGRYEGMVSPDEGADTPTYLALISVDAKEPKGQFCKLRKV 850
            + V +VTG NKGIG +IV+    LF  D     V LTAR+   G   V++ +  GL PRFHQLDI D  SI  LRD L+ E+ GLDVLVNNAG+A+K +   PF  QAEVT   NFFGT ++C  L P++K  GRVV VSS  S  A    S EL+ KF    +  E L  L++ FV   K    +  GW  SAY  +K+GV+ +  +  +++  +     IL+N CCPG V T M G +     SP+EGA+TP YLAL+  DA+ P GQF   ++V
Sbjct:    5 IHVALVTGGNKGIGLAIVRDLCRLFSGD-----VVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK--ATKSPEEGAETPVYLALLPPDAEGPHGQFVSEKRV 274
The following BLAST results are available for this feature:
BLAST of TCONS_00066733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBR11.950e-6844.77Carbonyl reductase [NADPH] 1 OS=Homo sapiens GN=CB... [more]
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