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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066739 ID=TCONS_00066739|Name=TCONS_00066739|organism=Clytia hemisphaerica|type=transcript|length=1255bp
cccctgtcatgtcaagaaatgaaaaaattgtgtattttcacaattaaaaa
gaataatgatatcCACAGAACTTCTTCAACTCAGAGATCAATTTGTCCCA
AGAAAAGAGTTAGGAGCGCCTCACtggaaaaagaaagagaaaattcCAAT
TAATGCTGAACTACGTAATGACATCAAAGAAAAGAGGCGACTTCACAGGA
TCTGGCTAAAAACAAAATCATCATCCACAAACAGACGTCAAGCAAGAATC
CGATATGTAATCGCGAGGAACCGTGTCAATCGAAATATGGCACTTGCAAA
AAGAGAATACGATCTAGCCATCGGTGAAAACTCAAAGAGAAACCCAAAAG
CATTCTGAACACATGTCAGAGGCAAActtaaatcaaaaagtggagTTTCC
CCTCTTCTTGAAACGCCCGATGACAAGACATCCCTAAAGCACGAGGACCA
AGAAAAGGCCAACATCCTGTAGAAACAATTTTGCAGTGTCTTTACTAATG
AACCGGAAGGTGATCTACCTGATTCTGACAACAGAACAGATAAAATACTT
CAAGCACTAAACATTACGAAGGAAATGATAACAGAACAAATCAGGAAGCT
CAATGCAAATAAATCAATAGGTCCAGATGAGATTCATGCCTCAATGCTTA
TTGAACTTCGTGACCATATTGCAGAACCACTATCAATTATAATGAATAAA
ACTGTCGAGGAAGGAAACTTACCTAGTGACTGGAAACTAGCATATGTGAC
ACCAAtctataaaaacaaaggagcaCACAACCTTGCTATTAACTATCGCC
CTGTAAGTCTAACTTCAGTAGTCCGTAAGTTGATGGAAACAATGATATGA
AAACATATCATGGAACACCTTTTCAGCGAAGAACTTCTATCGAACAAGCA
ATACGGTTTCATCAACAAAAGGTCAACAGTCACACAGCTTATCTCCTTTA
TAGATATGTGTTGCGAATCAACTGCAAAAAGTGAAGTGGTCGACTGCATA
TACTTCGACTTTGCCAAGGCATTTGACACGGTACCCCATCGAAGACTTAT
GTTGAAACTAGAACGCTACGGGATAAACAAATCAATTCTGAACTGGATCA
AATCTTTTCTATCGAACCGCAAGCAATTAGTGAATGTTAATGGTGCAAAA
TCATCTTTAGATCCAGTGATAAGTGGCATTCCTCAAGGAAGCGTGCTCGG
TCCTCTGCTCTTTGTTATTTATATTAATGACCTACCAGAACATGTTCTAT
CAAGC Run BLAST on NCBI protein sequence of TCONS_00066739-protein >TCONS_00066739-protein ID=TCONS_00066739-protein|Name=TCONS_00066739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MEHLFSEELLSNKQYGFINKRSTVTQLISFIDMCCESTAKSEVVDCIYFD
FAKAFDTVPHRRLMLKLERYGINKSILNWIKSFLSNRKQLVNVNGAKSSL
DPVISGIPQGSVLGPLLFVIYINDLPEHVLSS Run BLAST on NCBI transcript from alignment at scaffold_459:1401..2655 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066739 ID=TCONS_00066739|Name=TCONS_00066739|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_459:1401..2655 (Clytia hemisphaerica)
GCTTGATAGAACATGTTCTGGTAGGTCATTAATATAAATAACAAAGAGCA
GAGGACCGAGCACGCTTCCTTGAGGAATGCCACTTATCACTGGATCTAAA
GATGATTTTGCACCATTAACATTCACTAATTGCTTGCGGTTCGATAGAAA
AGATTTGATCCAGTTCAGAATTGATTTGTTTATCCCGTAGCGTTCTAGTT
TCAACATAAGTCTTCGATGGGGTACCGTGTCAAATGCCTTGGCAAAGTCG
AAGTATATGCAGTCGACCACTTCACTTTTTGCAGTTGATTCGCAACACAT
ATCTATAAAGGAGATAAGCTGTGTGACTGTTGACCTTTTGTTGATGAAAC
CGTATTGCTTGTTCGATAGAAGTTCTTCGCTGAAAAGGTGTTCCATGATA
TGTTTTCATATCATTGTTTCCATCAACTTACGGACTACTGAAGTTAGACT
TACAGGGCGATAGTTAATAGCAAGGTTGTGtgctcctttgtttttataga
TTGGTGTCACATATGCTAGTTTCCAGTCACTAGGTAAGTTTCCTTCCTCG
ACAGTTTTATTCATTATAATTGATAGTGGTTCTGCAATATGGTCACGAAG
TTCAATAAGCATTGAGGCATGAATCTCATCTGGACCTATTGATTTATTTG
CATTGAGCTTCCTGATTTGTTCTGTTATCATTTCCTTCGTAATGTTTAGT
GCTTGAAGTATTTTATCTGTTCTGTTGTCAGAATCAGGTAGATCACCTTC
CGGTTCATTAGTAAAGACACTGCAAAATTGTTTCTACAGGATGTTGGCCT
TTTCTTGGTCCTCGTGCTTTAGGGATGTCTTGTCATCGGGCGTTTCAAGA
AGAGGGGAAActccactttttgatttaagTTTGCCTCTGACATGTGTTCA
GAATGCTTTTGGGTTTCTCTTTGAGTTTTCACCGATGGCTAGATCGTATT
CTCTTTTTGCAAGTGCCATATTTCGATTGACACGGTTCCTCGCGATTACA
TATCGGATTCTTGCTTGACGTCTGTTTGTGGATGATGATTTTGTTTTTAG
CCAGATCCTGTGAAGTCGCCTCTTTTCTTTGATGTCATTACGTAGTTCAG
CATTAATTGgaattttctctttctttttccaGTGAGGCGCTCCTAACTCT
TTTCTTGGGACAAATTGATCTCTGAGTTGAAGAAGTTCTGTGgatatcat
tattctttttaattgtgaaaatacacaattttttcatttcttgacatgac
agggg Coding sequence (CDS) from alignment at scaffold_459:1401..2655 >TCONS_00066739 ID=TCONS_00066739|Name=TCONS_00066739|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_459:1401..2655 (Clytia hemisphaerica)
GCTTGATAGAACATGTTCTGGTAGGTCATTAATATAAATAACAAAGAGCA
GAGGACCGAGCACGCTTCCTTGAGGAATGCCACTTATCACTGGATCTAAA
GATGATTTTGCACCATTAACATTCACTAATTGCTTGCGGTTCGATAGAAA
AGATTTGATCCAGTTCAGAATTGATTTGTTTATCCCGTAGCGTTCTAGTT
TCAACATAAGTCTTCGATGGGGTACCGTGTCAAATGCCTTGGCAAAGTCG
AAGTATATGCAGTCGACCACTTCACTTTTTGCAGTTGATTCGCAACACAT
ATCTATAAAGGAGATAAGCTGTGTGACTGTTGACCTTTTGTTGATGAAAC
CGTATTGCTTGTTCGATAGAAGTTCTTCGCTGAAAAGGTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066739-exon-scaffold_459-1491911889:1401..2655 | TCONS_00066739-exon-scaffold_459-1491911889:1401..2655 | Clytia hemisphaerica | exon |
| TCONS_00066739-exon-scaffold_459-1510915933:1401..2655 | TCONS_00066739-exon-scaffold_459-1510915933:1401..2655 | Clytia hemisphaerica | exon |
| TCONS_00066739-exon-scaffold_459-1575043694:1401..2655 | TCONS_00066739-exon-scaffold_459-1575043694:1401..2655 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_459 | supercontig | scaffold_459:1401..2655 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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