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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066748 ID=TCONS_00066748|Name=TCONS_00066748|organism=Clytia hemisphaerica|type=transcript|length=1142bp
TCTCTTTCTTATATTAaccttttattttttgataaggGTTCTAGACCTAG
GGGTTTATTTTAAAAGTCTACAAATGAAAACCCCATGACTTGCTAGCTTA
TGGAAATTAATTATTTGCAAACAATTTAAAGGGAATTAAAAGTCGTGAAA
ATGTAATCAACAAGTAGAAATTGTACACAATAGAGACGAGTATAAAAAGG
GCAACTTTGCACCAATTTTGGAGATTCTAATCTGAGATTAGCTCTAGACA
GTTGAGGGTAAACAGTCAAAGAATCCTATCATAAAATGCTGGATTACATG
ATGGAAGTGAGTGAAGAATTCGGCACAAACGTTAAAAGACCAGCATTTTC
CATCGACTCAATTTTATCCCAAAAAATGAGTGAAGATAGTACAACAGTTG
CGAAACTTGACGACTCTTTACCGACTTTAACTCGTCGATATTCCTCGGCT
GACGACTCTTATACCAAATGCAGTTGTGATAAATGTGACCATGGCAACAA
TCAATTTCGTGTCAACTTACATGGGAACAGTCTTGCAGATGATTTCGAAA
ATCGATCATTTACAACTTCACCAACTCGCTTCAATAGAGAAGATACAGAC
GAAGACCTCAATTTGAAGTATTCCAGATACTTCAACGACATAGACGACAC
GAGCAATCGATACAGCAAACGTCGACGGACCATTTTCACGTCAAGTCAAC
TTGAACGGTTAGAGTATGAATTCCAACAGCAACAATATATCGTTGGTCAA
GAGAGACGTTTTCTTGCTCGACAACTTGGTTTGAATGAAATCCAAGTCAA
AGTTTGGTTTCAAAACCGTAGAATCAAGTGGAGGAAATTGACACATGGTT
CTATTCCGTCGGTTATTCCAGAACtttctttatgattttgtatATGATTA
TTTGataatttagaaatattttcgtaaaatttatgtaaataATTGTATAT
AatgatgaatttttgaaatgatttcttacctaaaaaaatttaatacaaaG
ACTTTTTTCATGAAGATCCAATCTTAAGTCAGGtcttatttcttcttttt
cttactcGCCACGTCGTCTATTTTAGTGAGTATTTGAAATGACGTAATCA
AAAGTGATAAACAATGGATTATTCGAACGCCATATAAAACGT Run BLAST on NCBI protein sequence of TCONS_00066748-protein >TCONS_00066748-protein ID=TCONS_00066748-protein|Name=TCONS_00066748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MLDYMMEVSEEFGTNVKRPAFSIDSILSQKMSEDSTTVAKLDDSLPTLTR
RYSSADDSYTKCSCDKCDHGNNQFRVNLHGNSLADDFENRSFTTSPTRFN
REDTDEDLNLKYSRYFNDIDDTSNRYSKRRRTIFTSSQLERLEYEFQQQQ
YIVGQERRFLARQLGLNEIQVKVWFQNRRIKWRKLTHGSIPSVIPELSL Run BLAST on NCBI transcript from alignment at scaffold_46:40225..41758+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066748 ID=TCONS_00066748|Name=TCONS_00066748|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_46:40225..41758+ (Clytia hemisphaerica)
TCTCTTTCTTATATTAaccttttattttttgataaggGTTCTAGACCTAG
GGGTTTATTTTAAAAGTCTACAAATGAAAACCCCATGACTTGCTAGCTTA
TGGAAATTAATTATTTGCAAACAATTTAAAGGGAATTAAAAGTCGTGAAA
ATGTAATCAACAAGTAGAAATTGTACACAATAGAGACGAGTATAAAAAGG
GCAACTTTGCACCAATTTTGGAGATTCTAATCTGAGATTAGCTCTAGACA
GTTGAGGGTAAACAGTCAAAGAATCCTATCATAAAATGCTGGATTACATG
ATGGAAGTGAGTGAAGAATTCGGCACAAACGTTAAAAGACCAGCATTTTC
CATCGACTCAATTTTATCCCAAAAAATGAGTGAAGATAGTACAACAGTTG
CGAAACTTGACGACTCTTTACCGACTTTAACTCGTCGATATTCCTCGGCT
GACGACTCTTATACCAAATGCAGTTGTGATAAATGTGACCATGGCAACAA
TCAATTTCGTGTCAACTTACATGGGAACAGTCTTGCAGATGATTTCGAAA
ATCGATCATTTACAACTTCACCAACTCGCTTCAATAGAGAAGATACAGAC
GAAGGTGTGTTTTTACTTTacataaaatgttttctttgaaatcaaaatcT
CTGATATTTAAAGACATTTcgtaggcgtagcgagataccctgcaaaatat
atggatgagagcggtttttacgacactgttattattgtctttgttttatc
aaaagataatgaatatgtcataaacgtctgcactccctcataaattttgc
aggttatctcgctacgcctatgcatTTAGTATCAGATATTCAAACATTGA
AGTTTTTCCAACATTCTCCGTATACTTTACTGTATAATAAGCATTCCCTT
GAAGTCTCCCTTTAGGAACACTGATCTCCATAGTCATTCATTCCATTTAA
GTAGTAGGGCTTTATTTAACCAAATTATTCTATCATTATTTTACAGACCT
CAATTTGAAGTATTCCAGATACTTCAACGACATAGACGACACGAGCAATC
GATACAGCAAACGTCGACGGACCATTTTCACGTCAAGTCAACTTGAACGG
TTAGAGTATGAATTCCAACAGCAACAATATATCGTTGGTCAAGAGAGACG
TTTTCTTGCTCGACAACTTGGTTTGAATGAAATCCAAGTCAAAGTTTGGT
TTCAAAACCGTAGAATCAAGTGGAGGAAATTGACACATGGTTCTATTCCG
TCGGTTATTCCAGAACtttctttatgattttgtatATGATTATTTGataa
tttagaaatattttcgtaaaatttatgtaaataATTGTATATAatgatga
atttttgaaatgatttcttacctaaaaaaatttaatacaaaGACTTTTTT
CATGAAGATCCAATCTTAAGTCAGGtcttatttcttctttttcttactcG
CCACGTCGTCTATTTTAGTGAGTATTTGAAATGACGTAATCAAAAGTGAT
AAACAATGGATTATTCGAACGCCATATAAAACGT Coding sequence (CDS) from alignment at scaffold_46:40225..41758+ >TCONS_00066748 ID=TCONS_00066748|Name=TCONS_00066748|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_46:40225..41758+ (Clytia hemisphaerica)
ATGCTGGATTACATGATGGAAGTGAGTGAAGAATTCGGCACAAACGTTAA
AAGACCAGCATTTTCCATCGACTCAATTTTATCCCAAAAAATGAGTGAAG
ATAGTACAACAGTTGCGAAACTTGACGACTCTTTACCGACTTTAACTCGT
CGATATTCCTCGGCTGACGACTCTTATACCAAATGCAGTTGTGATAAATG
TGACCATGGCAACAATCAATTTCGTGTCAACTTACATGGGAACAGTCTTG
CAGATGATTTCGAAAATCGATCATTTACAACTTCACCAACTCGCTTCAAT
AGAGAAGATACAGACGAAGACCTCAATTTGAAGTATTCCAGATACTTCAA
CGACATAGACGACACGAGCAATCGATACAGCAAACGTCGACGGACCATTT
TCACGTCAAGTCAACTTGAACGGTTAGAGTATGAATTCCAACAGCAACAA
TATATCGTTGGTCAAGAGAGACGTTTTCTTGCTCGACAACTTGGTTTGAA
TGAAATCCAAGTCAAAGTTTGGTTTCAAAACCGTAGAATCAAGTGGAGGA
AATTGACACATGGTTCTATTCCGTCGGTTATTCCAGAACtttctttatga
ATGCTGGATTACATGATGGAAGTGAGTGAAGAATTCGGCACAAACGTTAA
AAGACCAGCATTTTCCATCGACTCAATTTTATCCCAAAAAATGAGTGAAG
ATAGTACAACAGTTGCGAAACTTGACGACTCTTTACCGACTTTAACTCGT
CGATATTCCTCGGCTGACGACTCTTATACCAAATGCAGTTGTGATAAATG
TGACCATGGCAACAATCAATTTCGTGTCAACTTACATGGGAACAGTCTTG
CAGATGATTTCGAAAATCGATCATTTACAACTTCACCAACTCGCTTCAAT
AGAGAAGATACAGACGAAGACCTCAATTTGAAGTATTCCAGATACTTCAA
CGACATAGACGACACGAGCAATCGATACAGCAAACGTCGACGGACCATTT
TCACGTCAAGTCAACTTGAACGGTTAGAGTATGAATTCCAACAGCAACAA
TATATCGTTGGTCAAGAGAGACGTTTTCTTGCTCGACAACTTGGTTTGAA
TGAAATCCAAGTCAAAGTTTGGTTTCAAAACCGTAGAATCAAGTGGAGGA
AATTGACACATGGTTCTATTCCGTCGGTTATTCCAGAACtttctttatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066748-exon-scaffold_46-1491911889:40225..40828 | TCONS_00066748-exon-scaffold_46-1491911889:40225..40828 | Clytia hemisphaerica | exon |
| TCONS_00066748-exon-scaffold_46-1510915933:40225..40828 | TCONS_00066748-exon-scaffold_46-1510915933:40225..40828 | Clytia hemisphaerica | exon |
| TCONS_00066748-exon-scaffold_46-1575043694:40225..40828 | TCONS_00066748-exon-scaffold_46-1575043694:40225..40828 | Clytia hemisphaerica | exon |
| TCONS_00066748-exon-scaffold_46-1491911889:41221..41758 | TCONS_00066748-exon-scaffold_46-1491911889:41221..41758 | Clytia hemisphaerica | exon |
| TCONS_00066748-exon-scaffold_46-1510915933:41221..41758 | TCONS_00066748-exon-scaffold_46-1510915933:41221..41758 | Clytia hemisphaerica | exon |
| TCONS_00066748-exon-scaffold_46-1575043694:41221..41758 | TCONS_00066748-exon-scaffold_46-1575043694:41221..41758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:40225..41758 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00066748 vs. Swiss-Prot (Human)
Match: VAX1 (Ventral anterior homeobox 1 OS=Homo sapiens GN=VAX1 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.080e-17 Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1
Query: 667 KRRRTIFTSSQLERLEYEFQQQQYIVGQERRFLARQLGLNEIQVKVWFQNRRIKWRK 837
KR RT FT+ QL RLE EFQ+ QY+VG+ER LARQL L+E QVKVWFQNRR K +K
Sbjct: 101 KRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKK 157
The following BLAST results are available for this feature:
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