|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066758 ID=TCONS_00066758|Name=TCONS_00066758|organism=Clytia hemisphaerica|type=transcript|length=2684bp
ttttacagtaaaaataaataaataaataatccAAGATGGCGTCGTCGAGT
AAGCAAGCAAAGAAAGAGGAGGAGAAAAAAGTGGGCGGTGATCATTTCAG
AAGGACTTGGGATGctgatgaatttgaaaagaaagctAAAGAACGTTTAC
AAGAAGATTTAGATTTTCTTGACGGCAAAGCGTCCTCATCCAGTAGTGAT
CCACCAGTTCAACGTGAGAAGCTGAAAGCAAGAGATTACGCTGTAGACTT
ACAATCAAGATTGGGAAAATCACAAGTCATCACTAAAACTACTGCACTGG
CCGATCAAGGTGGTTATTATTGCAATGTGTGTGATTGCGTGGTGAAAGAT
TCCATTAACTTCTTGGATCACATCAATGGAAAGAAGCATCAGCGAAACAT
GGGAATGTCTATGAAAGTTGAAAGATCATCTCTTGACCAAGTCAAAGCTA
GGTTTGCCATGAATAAGAAGAAGAAGGAAGATAACGAGAAAAAGAAAGAT
TATGACTTCGATTCAAGAATTAAAGAACTAGAAGATGAGGATGACCGAGT
ACGCCAACGTAGGCGTGATTCGAAATCAGAACGTAAACGCAAGCAACAAG
AAGCTTTACAAGAATACCAAGATGATGACGTGGCTGCAATGATGGGTTTT
GGAGGATTTGGCGGCTCAAAATAAATATAACACGCTATACTCATCAAAAT
TCATTTCTCGACTTGTCAAGGTTAGTGGCATTTTCAATGCTGTGGTATCA
CTATGGTCAACGTTAAGTAAAGATATCAACATTGTGATAATGGGATTGCT
CCCGAAACTTTCTTTGAGAGAAAGCGAGGGAAAAGTTAGGTTGCTGGAAA
ATCGCAATTCCACGCGGGGAACAAACACCGAAAGTTTGAATTATTTAGTA
GCTGGAATCAGATTAAACATTTAGCTTGAGACATTTCCAGAAGTACTAAG
CTAATGGTGATGGCTATTGAAACGTGTAGGGATGGACGCTCAGGAAAACT
ACCTTAAataggaactaattttgacgagggccaaaaatttcaggaaagtt
tAATCTTGGCGAGAACTAATGTTTTCGCGTAGCAGGGTAAATCAGTTCCA
TTTTCCGTTTTGACAAAGAATTGGGacgattttggaaaattacaaacgaa
aattaattttggcgaggtAGCAATTATGCCAAATTCGCGTTACCCTCTTT
TGAAAAGATACGAAATAATCGAAGGTAAGAattaattttcgtcaaaatta
gttccttgGAAAATGTAAAATGAAGAACACTAGTAATATTATTTGAAATG
GAACCGCTGTGTCAAAAGATAAAAACTgtggttttttcaattttgattta
tttttttatcatgaATTCCAAAAGATACAGTAATAGATGACAAGAAAAAG
GCGATGAAATTTATGTTAGGAAAAATCCTCACAAAATATTTGCCAATCGA
TACTAGGACTATTTAGACCTTTGGAAACATAAcctcaaaattttgaggaa
CGGTGGTgcgatttaaaaataaaaaagtcttgttCGTATGTAGAGATCGG
CACACTCAAGATAATGTATACGTGTATATGTGtgaaatgtaaaaaataaa
agccCAATGATCTTTCCGTTCTCCTATATTTAACGTCCAAGGTGTAAAAG
TTACTGTATAAAAGTTCAAGCGTTATTGAGTGCTTCTTCCATATTACGTG
GTTTGAATACACACTTATAATCCTCAGGGATACGACTCACACCGGTGTGT
CCTTCCAAAGAAGGCAAATTCTCCTCGTCAGATGgcaaaatttcgaaatt
gtAAACAACACTTGAAAATATGATGAACAACTCCATTTTGGCCAACACAT
CTCCTGGGCATGATCGACGTCCCATAGAGAACGGGTAGAAACCTTTATTC
GTATTCCCTTCAAATTCGCCTGATTCGTTTAACCAGCGTTGCGGGATGAA
TTCATCTGGATGGTCCCAGTAGTTTGGATCGTGGTGAATGGCCCAGTAAT
TCACAATCACCTGAGCACCCTTAGGTATTGATTTTGTTCCCAAGATGGTG
TCCCTGGTGGTCTTGTATGGCACACCAAGTGGAGCTATTGTAACATAACG
GAAGACTTCGTTGATGAAAGCTCTGGTCAAATGACATTTCACTTGATCTG
ACAACCTCGGTGATTTACCTTGGACATTTTGCTGTAATTCGGTGTATATT
TCATCTTGATACTGTGGCCAGTGTAAGAGAAACAGAATGCTCCAATAAAG
CATTGTTTTGACTGTTTCAGATCCACCAATGATAAGATCTTGCATGGTTG
CGATAATGTTTTCGTCAATGTTTGACCCTTCGTAACCGAGCTCTTTCCAT
TTCGATGCGTCAGCCTTTGAACTTAGAATCAAATGGTCTATTAAATCCCT
CAAATTTCTCTCATCAAATGTATTCTTATGTTgccaatatttttctttaa
acacaGCCTGGATCCGCTTGGCTTCTTTTAGTAATCGTAAACTTTCACTC
GGAAAGAATCGTAACCAAGGAAACACATCAATTGGAACACCACTTCGAAC
GGCTGTAGTCAGGATTTCCGAGTATTTGTGTATTCTGCGGAACTCTTCTT
CATCCACTTGATATCGCTTGCCGAACTGCAGGCCGCAAATTACGTTTGTC
ATTGAACATGCTGTTAAtgaataaaagttaaaaa Run BLAST on NCBI transcript from alignment at scaffold_46:158941..165492+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066758 ID=TCONS_00066758|Name=TCONS_00066758|organism=Clytia hemisphaerica|type=transcript|length=6552bp|location=Sequence derived from alignment at scaffold_46:158941..165492+ (Clytia hemisphaerica)
ttttacagtaaaaataaataaataaataatccAAGATGGCGTCGTCGAGT
AAGCAAGCAAAGAAAGAGGAGGAGAAAAAAGTGGGCGGTGATCATTTCAG
AAGGACTTGGGATGctgatgaatttgaaaagaaagctAAAGGTAATGATT
TCATTTCCATATCAtaactagactggagtcgtttataatgcgtgtaatac
agtagtataggcgttatatgacaataagattattgttacgggattttttt
gtataaacgactaaaattgttccaacCATTAGTTTTTGCTAGTCGTCTAG
CTTACTAGTCTATATCATAACTGAATGATTTTGTATCGAGTCAAACATGA
CCCATGAGCATTATTTCGATGCAACATCTGTCCTCACTTTGCTAGAGGTT
CAATTTACCCCATCATGAGTTTAATTACTGTAATAAGTCATTCTTTAAAT
CTACCATCTTTTATTTTGTAGAACGTTTACAAGAAGATTTAGATTTTCTT
GACGGCAAAGCGTCCTCATCCAGTAGTGATCCACCAGTTCAACGTGAGAA
GCTGAAAGCAAGAGATTACGCTGTAGACTTACAATCAAGATTGGGAAAAT
CACAAGTCATCACTAAAACTACTGCACTGGCCGATCAAGGTATAGATGCt
caatttctttaaaatgaaCGTTTTTTTTCCATATCCGTTCGGCTGTTCGT
CTATACCGTAAGGTTCAAACCTGAAACATTAAATTTCACCATCATTCCTT
CTCTGCGATAAATTGTAGGATcgacttttaatttttcaccaTCGATTTTT
ATACATATCTAATAGTGATGAAATTCTAGAAAGTAAATGCATTGCTCTGT
AACCGTAGATTCTTTAGTATGGAACTTGGGAAAATCATCCATTGATACAA
TTTTATATTCGTTACTGTCTATTTCTTCTTCACAGGTGGTTATTATTGCA
ATGTGTGTGATTGCGTGGTGAAAGATTCCATTAACTTCTTGGATCACATC
AATGGAAAGAAGCATCAGCGAAACATGGGAATGTCTATGAAAGTTGAAAG
ATCATCTCTTGACCAAGTCAAAGCTAGGTTTGCCATGAATAAGAAGAAGA
AGGAAGATAACGAGAAAAAGAAAGATTATGACTTCGATTCAAGAATTAAA
GAACTAGAAGATGAGgtttgtctgtctgtctgtctgtctgtctgtctgtc
tgtctgtctgtctgtctgtctaaCTATATGTTTGACTGTTGATACTCTAA
ACCTGAGTGTATCGCACATTTATCGAAGCGTAGCACAGGcgatgaaattt
gaaatatccGTAGACATGGGTCAGTTTCCAGACCTCTAGTTGATTATATG
CATGGCGTTGTTCTGTTGGTCCACCTGTTTAGTTGACTGCGTTCAACAGA
TATCCTTGACGAGTAACAATGTCTGTAAAATAGCGTAGAATATTTGGGGA
GACTGATTTTtagtaccttaagagaagaaattttggcgaatcaGCTCATT
CGtcaattttggtgcaatttggcgagaattaattttggcgaacgacccat
attttagaagaagaaaaagaggaaagaagggtttttaggagaaatagagg
actaaattgaaagaaaattaaatttggccagaatttatttttgcgaatga
cctataaatctaaatttggcggaaagaaatgttggtgaatttggcaaaat
ttttaggcaatttgccaaattcgccaaaatttttgtcctccaaaatttct
ttccttaagggctctgaccatagtgaatttttgatatttgccacttacaa
aatgTAAAGTTCTACTTGATATAGctcacaaaactgtggcatgttataca
ttttctgttaggccaattatccttgagtctgaaaatttatgaatcgcaat
gaaaaaatttgatgaaggagaaaatgaagacttttacaaagaagagtatt
ttaactttgaagagcttagtttcggcgcaaaaaaaacattttgaaaaaaa
atttgcggtagatggtgtatcttttatcaaactaaaattatttttttgga
aatttttctaaaagcttatttgtctcaaaatcttgaaaatagtgcttttt
gaccaaaattttccatcccaattcttcatagaaaaacagtcataactttt
gatgcattaatgtagaaaaattttccaaaaaaattaaaacaattcaATTC
TTTGTGGACAGTTTAAAagacttcaaaacaaaaaggttaattacccatta
aaacttggcactttttatataaaagaaggtgatgcaacatattattaacg
tctttttaaagttcataacgtcatttttgcaattaaattcttaattactt
ttatATTAagagatttgattaaaaagcaatttataagggcaattctttgt
taaagtgTTAAGAACctaaataacttttatgttcaaatactaaaatcaaa
tttCCGACCATGATcaccagagcccttaaggtaaTTGGTTTTTCCTTTAT
TATTgttaattcaatttttctattttgcagGATGACCGAGTACGCCAACG
TAGGCGTGATTCGAAATCAGAACGTAAACGCAAGCAACAAGAAGCTTTAC
AAGAATACCAAGATGATGACGTGGCTGCAATGATGGGTTTTGGAGGATTT
GGCGGCTCAAAATAAATATAACACGCTATACTCATCAAAATTCATTTCTC
GACTTGTCAAGGTTAGTGGCATTTTCAATGCTGTGGTATCACTATGGTCA
ACGTTAAGCAAAGATATCAACATTGTGATAATGGGATTGCTCCCGAAACT
TTCTTTGAGAGAAAGCGAGGGAAAAGTTAGGTTGCTGGAAAATCGCAATT
CCACGCGGGGAACAAACACCGAAAGTTTGAATTATTTAGTAGCTGGAATC
AGATTAAACATTTAGCTTGAGACATTTCCAGAAGTACTACGCTAATGGTG
ATGGCTATTGAAACGTGTAGGGATGGACGCTCAGGAAAACTACCTTAAat
aggaactaattttgacgagggccaaaaatttcaggaaagtttAATCTTGG
CGAGAACTAATGTTTTCGCGTAGCAGGGTAAATCAGTTCCATTTTCCGTT
TTGACAAAGAATTGGGacgattttggaaaattacaaacgaaaattaattt
tggcgaggtAGCAATTATGCCAAATTCGCGTTACCCTCTTTTGAAAAGAT
ACGAAATAATCGAAGGTAAGAattaattttcgtcaaaattagttccttgG
AAAATGTAAAATGAAGAACACTAGTAATATTATTTGAAATGGAACCGCTG
TGTCAAAAGATAAAAACTgtggttttttcaattttgatttatttttttat
catgaATTCCAAAAGATACAGTAATAGATGACAAGAAAAAGGCGATGAAA
TTTATGTTAGGAAAAATCCTCACAAAATATTTGCCAATCGATACTAGGAC
TATTTAGACCTTTGGAAACATAAcctcaaaattttgaggaaCGGTGGTgc
gatttaaaaataaaaaagtcttgttCGTATGTAGAGATCGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTAgttatgttt
ttaacattttgatttttggaaaatacatatttaTGAAGCACTACAACTGT
ATTGTGCACTCTTTGGATGTTTGCTACGCATTATTCAttaaaagcttatt
tgtctcaaaatcttgaaaatagtgcttgaccaaaattttccatcccaatt
cttcatagaaaaacagtcataacttttgatgcattaatgtagaaaaattt
tccaacaaaattaaaacaattcaATTCTTTGTGGACAGTTTAAAagactt
caaaacaaaaaggttaattacccattaaaacttggcactttttttataaa
agaaggtgatgcaacatattattaacgtctttttaaagttcataacgtca
tttttgcaattaaattcttaattactcttataTTAagagatttgattaaa
aagcaatttataagggcaattctttgttaaagtgTTAAGAACctaaataa
cttttatgttcaaatactaaaatcaaatttCCGACTATGATcaccagagc
ccttaaggtaaTTGGTTTTTCCTTTATTATTgttaattcaatttttctat
tttgcagGATGACCGAGTACGCCAACGTAGGCGTGATTCGAAATCAGAAC
GTAAACGCAAGCAACAAGAAGCTTTACAAGAATACCAAGATGATGACGTG
GCTGCAATGATGGGTTTTGGAGGATTTGGCGGCTCAAAATAAATATAACA
CGCTATACTCATCAAAATTCATTTCTCGACTTGTCAAGGTTAGTGGCATT
TTCAATGCTGTGGTATCACTATGGTCAACGTTAAGTAAAGATATCAACAT
TGTGATAATGGGATTGCTCCCGAAACTTTCTTTGAGAGAAAGCGAGGGAA
AAGTTAGGTTGCTGGAAAATCGCAATTCCACGCGGGGAACAAACACCGAA
AGTTTGAATTATTTAGTAGCTGGAATCAGATTAAACATTTAGCTTGAGAC
ATTTCCAGAAGTACTAAGCTAATGGTGATGGCTATTGAAACGTGTAGGGA
TGGACGCTCAGGAAAACTACCTTAAataggaactaattttgacgagggcc
aaaaatttcaggaaagtttAATCTTGGCGAGAACTAATGTTTTCGCGTAG
CAGGGTAAATCAGTTCCATTTTCCGTTTTGACAAAGAATTGGGacgattt
tggaaaattacaaacgaaaattaattttggcgaggtAGCAATTATGCCAA
ATTCGCGTTACCCTCTTTTGAAAAGATACGAAATAATCGAAGGTAAGAat
taattttcgtcaaaattagttccttgGAAAATGTAAAATGAAGAACACTA
GTAATATTATTTGAAATGGAACCGCTGTGTCAAAAGATAAAAACTgtggt
tttttcaattttgatttatttttttatcatgaATTCCAAAAGATACAGTA
ATAGATGACAAGAAAAAGGCGATGAAATTTATGTTAGGAAAAATCCTCAC
AAAATATTTGCCAATCGATACTAGGACTATTTAGACCTTTGGAAACATAA
cctcaaaattttgaggaaCGGTGGTgcgatttaaaaataaaaaagtcttg
ttCGTATGTAGAGATCGGCACACTCAAGATAATGTATACGTGTATATGTG
tgaaatgtaaaaaataaaagccCAATGATCTTTCCGTTCTCCTATATTTA
ACGTCCAAGGTGTAAAAGTTACTGTATAAAAGTTCAAGCGTTATTGAGTG
CTTCTTCCATATTACGTGGTTTGAATACACACTTATAATCCTCAGGGATA
CGACTCACACCGGTGTGTCCTTCCAAAGAAGGCAAATTCTCCTCGTCAGA
TGgcaaaatttcgaaattgtAAACAACACTTGAAAATATGATGAACAACT
CCATTTTGGCCAACACATCTCCTGGGCATGATCGACGTCCCATAGAGAAC
GGGTAGAAACCTTTATTCGTATTCCCTTCAAATTCGCCTGATTCGTTTAA
CCAGCGTTGCGGGATGAATTCATCTGGATGGTCCCAGTAGTTTGGATCGT
GGTGAATGGCCCAGTAATTCACAATCACCTGAGCACCCTTAGGTATTGAT
TTTGTTCCCAAGATGGTGTCCCTGGTGGTCTTGTATGGCACACCAAGTGG
AGCTATTGTAACATAACGGAAGACTTCGTTGATGAAAGCTCTGGTCAAAT
GACATTTCACTTGATCTGACAACCTCGGTGATTTACCTTGGACATTTTGC
TGTAATTCGGTGTATATTTCATCTTGATACTGTGGCCAGTGTAAGAGAAA
CAGAATGCTCCAATAAAGCATTGTTTTGACTGTTTCAGATCCACCAATGA
TAAGATCTTGCATGGTTGCGATAATGTTTTCGTCAATGTTTGACCCTTCG
TAACCGAGCTCTTTCCATTTCGATGCGTCAGCCTTTGAACTTAGAATCAA
ATGGTCTATTAAATCCCTCAAATTTCTCTCATCAAATGTATTCTTATGTT
gccaatatttttctttaaacacaGCCTGGATCCGCTTGGCTTCTTTTAGT
AATCGTAAACTTTCACTCGGAAAGAATCGTAACCAAGGAAACACATCAAT
TGGAACACCACTTCGAACGGCTGTAGTCAGGATTTCCGAGTATTTGTGTA
TTCTGCGGAACTCTTCTTCATCCACTTGATATCGCTTGCCGAACTGCAGG
CCGCAAATTACGTTTGTCATTGAACATGCTGTTAAtgaataaaagttaaa
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066758-exon-scaffold_46-1491911889:158941..159081 | TCONS_00066758-exon-scaffold_46-1491911889:158941..159081 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1510915933:158941..159081 | TCONS_00066758-exon-scaffold_46-1510915933:158941..159081 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1575043694:158941..159081 | TCONS_00066758-exon-scaffold_46-1575043694:158941..159081 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1491911889:159412..159579 | TCONS_00066758-exon-scaffold_46-1491911889:159412..159579 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1510915933:159412..159579 | TCONS_00066758-exon-scaffold_46-1510915933:159412..159579 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1575043694:159412..159579 | TCONS_00066758-exon-scaffold_46-1575043694:159412..159579 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1491911889:159876..160105 | TCONS_00066758-exon-scaffold_46-1491911889:159876..160105 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1510915933:159876..160105 | TCONS_00066758-exon-scaffold_46-1510915933:159876..160105 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1575043694:159876..160105 | TCONS_00066758-exon-scaffold_46-1575043694:159876..160105 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1491911889:163348..165492 | TCONS_00066758-exon-scaffold_46-1491911889:163348..165492 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1510915933:163348..165492 | TCONS_00066758-exon-scaffold_46-1510915933:163348..165492 | Clytia hemisphaerica | exon |
| TCONS_00066758-exon-scaffold_46-1575043694:163348..165492 | TCONS_00066758-exon-scaffold_46-1575043694:163348..165492 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:158941..165492 + |
Blast
BLAST of TCONS_00066758 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 8.783e-53 Identity = 104/325 (32.00%), Postives = 184/325 (56.62%), Query Frame = -3
Query: 1696 CSMTNVICGLQFGKRYQVDEEEFRRIHKYSEILTTAVRSGVPIDVFPWLRFFPSESLRLLKEAKRIQAVFKEKYWQ-HKNTFDERNLRDLIDHLILSSKADASKWKELGYEGSNI--DENIIATMQDLIIGGSETVKTMLYWSILFLLHWPQYQDEIYTELQQNVQ-GKSPRLSDQVKCHLTRAFINEVFRYVTIAPLGVPYKTTRDTILGTKSIPKGAQVIVNYWAIHHDPNYWDHPDEFIPQRWLNESGEFEGNTNKGFYPFSMGRRSCPGDVLAKMELFIIFSSVVYNFEILPSDEENLPSLEGHTGVSRIPEDYKCVFKPR 2658
++TNVI + F Y+ + E I Y+E + + +D+ PWL+ FP+++L LK +I+ K + +K F ++ +++D L + +K ++ + S + D +I+ T+ D+ G ET +++ W++ FLLH PQ + ++Y E+ QNV ++P +SD+ + L A I EV R +AP+ +P+K D+ +G ++ KG +VI+N WA+HH+ W PD+F+P+R+LN +G + + + PF G RSC G++LA+ ELF+I + ++ F++ D+ LPSLEG V + + +K K R
Sbjct: 173 VAVTNVISLICFNTSYKNGDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTL-MQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFLIDSFKVKIKVR 496
The following BLAST results are available for this feature:
|
