TCONS_00066779 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066779
Unique NameTCONS_00066779
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1953

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066779 ID=TCONS_00066779|Name=TCONS_00066779|organism=Clytia hemisphaerica|type=transcript|length=1953bp
TCACTGTTTTTATAAATtataacaaaattttttctattttaaaaagtgta
tatttgaaaattgattaaaataaaTCTGAAAAAGATGACGGTATATCAAT
GTCTAGGCTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGCG
CAGGAATTATCATGCACAGACAAGCTTCCTAATTGTTCGGTTTTATCTCC
CATGCAATGTAGATCCACATCGGGTCAAACTAAATGTCCTATAAGTTGTG
CAAATCCGAAATGTTTCACAACcaccacaacaacaaccaccaccacaaca
acaacagccGTCCCTCCTACAATTTCTTCATCAGAACTTAACAGCACTGT
CTCAGTGAGATGTGATGACGAAAAGATGACCATTGTTATTCCCAAAAGTG
AAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATATTTCATGGAAT
GATTTTACTTGTGGACCAAGTGAAAAATCCAATAAAACACATGTGATTAT
GGTGGCTGGTTATTCGTCTTGTGGCACTAAAGCTGTGGATGATGGGGAAA
ACATCGTTTTTCGAAATAAGGTTTCTATCAGCAAAAATGCAACACATATT
ACTGAAAAACCTCATCTCGAGACAGCTAGTAGCTATGTTAGTATTGCAGA
GTGCAGAGTTCAGAAGCTAGTTAATGTTTCGCAAGAAGATGGGCTCAATG
TTACAATGCCTGATTCGGTGGTTGCAAAAACAAGTTCGACTGACGATTTC
ACCGTGTCGATGAATCTCTACAAATCAGAAGATTTCAACAAAATGTTCAG
CTATCCTGCTGTTATCGATATTACTGACCGATTCAATTTGGAAATCGAAC
TGGTAACTAGTTCCAGTCTTTTTATCATACCTCAAAATTGTCACGCAACG
CCTGACTCAAATCGAGATAATGCTCTCAAAGAAGACATCGTCACAGACAG
ATGTCCAACACctggtcacgatttccaagaagaAACACCAGCTGGCAATG
GCAACAAATTCCGATTCTCTTTGAATACGTTTAGATTCAAAAACACGAAC
GGTATGGTCTACATTCATTGCACAGCTCACGTATGCATGAAAAACAGCAC
AGATCCAAAATGTCGATTCGGTTGTGTCGATAAtcaaagaagaagaagga
gatcAGAAGATCAGACAAGACTTTTTGGTGATTTGACCAAAGATTATGAC
ATTCGAACTGGATTGATTGTTGTGCTTCCAACCAACAGCCAAGATGCTAC
AAAGACCACAACCAACCGTTCCAACGAAAAATCAACGGGAAACGgtttct
ttcaaaacaaaacaaatattctTTTGGTCACATTAATTGTGATTATGACA
CTCATCATCCTCGGTGCCGTAGCTTTTGTCTTCTATCGAAGAAGCGCCgt
tttaacaaaaaatatggCGATGAACACTGGGGTCAGTAATAAAGCATATC
AGGTTGAGTATTAAATATCGGATATAAATTTGCAGCAAACGATTTTATCT
GGTGTGATAATATATTACGAGAACTGATTTTCATATAGAAATCAAGGCAA
AGAATAAGCAAACACAGACAAACCCTCATGGAAACGCACATTGTCCAATT
ATTTGTTGGCCTTTGATGGATTATTTTAATATAACATATATTCTGGAGTA
TAACTATATTAATCAATTCTATCCTGTATCATAAAACCAATAACatttat
tttatcatattttggagatgaaagtttgactaatcaagacttcgtgagca
aaaaaaacatctatatctcataaaaaaattgagtaatttggctaagaaca
ttgatgtatgcttattaatagtgattcttatagataaacatgcgttttct
GAGCCAACAAANATctatatctcataaaaaaattgagtaatttggctaag
aacattgatgtatgcttattaatagtgattcttatagataaacatgcgtt
ttc
Run BLAST on NCBI

transcript from alignment at scaffold_46:173231..179015-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066779 ID=TCONS_00066779|Name=TCONS_00066779|organism=Clytia hemisphaerica|type=transcript|length=5785bp|location=Sequence derived from alignment at scaffold_46:173231..179015- (Clytia hemisphaerica)
TCACTGTTTTTATAAATTATAACAAAATTTTTTCTATTTTAAAAAGTGTA
TATTTGAAAATTGATTAAAATAAATCTGAAAAAGATGACGGTATATCAAT
GTCTAGGCTTATTTATGCTCCTTTGTCAACTCTCCCAGTTTACAGCTGCG
CAGGAATTATGTAAGTAACTTTTTCTACATTTATATAAGCATTATATCTA
GGTTCAGATATGGCAAAAATTTGAATGCGTAGTTAACCCAGGGGCGGGGG
TACTTGTGACTAAAACACTCTCAAAGGGTCTCGAAAATGACAATTAAATC
AAAAGGTACAATTTTTGATTTTTTGCATGCTCGAACGTGCATCTCACTTC
GCAAACCTAGTACACCCCCCCGCGATATTGAACTAATTAATGAAAATGTT
ATGCTGGTGGAGGTATTGGCCAGCCTGGACTTAAGAGCCTGTAGTAGATG
GATACAGTATTTCTATTGCTACACGAACAATAAATAGAAACAAGTAGTAT
ATTCTTAAAATTTGAAATTCTAATTCTTTTTTTAGCATGCACAGACAAGC
TTCCTAATTGTTCGGTTTTATCTCCCATGCAATGTAGATCCACATCGGGT
CAAACTAAATGTCCTATAAGTTGTGCAAATCCGAAATGTTTCACAACCAC
CACAACAACAACCACCACCACAACAACAACAGCCGTCCCTCCTACAATTT
CTTCATCAGGTACTTTTGATTATCTAATCGTCCAGAAGGAGCACTGTTAC
TTCGCGATACTAGGACCTAAATAAATATCTCAAACACCTTTGTAAACCCT
ACACTAAGCTCCGCCTATGATCGACGAGATATCATTGAAGAAGAAACTAT
TGAAGCGTTAAAAATTTGCCTAACGTCCAACGGGTCTACATTGGGGTACA
TTGCACTTTTTCAAAAAAAAGTGTTGCTAGATCTTTACCCAGCTGGCACA
TATCTTATATAAAAGACTTCTTATATAAAAAAACTTTTTCTATAAGAAAC
TCTTTTTTTTCACTATAGGATGAGCAAAAGCCTAGGACCCAGCTCAAATC
CTAGCCTCATCTAATATTCCGCTAAGCTGATAAATAAGATACCATATCAT
ATAAGATATGTTGGATTGAAACAGGATTTTTATCTATTTAGAACTTAACA
GCACTGTCTCAGTGAGATGTGATGACGAAAAGATGACCATTGTTATTCCC
AAAAGTGAAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATATTTC
ATGGAATGATTTTACTTGTGGACCAAGTGAAAAATCCAATAAAACACATG
TGATTATGGTGGCTGGTTATTCGTCTTGTGGCACTAAAGCTGTGGATGAT
GGGGAAAACATCGTTTTTCGAAATAAGGTACCTAATCATATACTTTAATG
GGATAAACTTTCGCGGGGATTTTTTTTGGGACACTTAAAACTTGAACGAC
TTTTAAAAAATAAATTTTCCAAAAACTTTTGCTTTTAGGTTTCTATCAGC
AAAAATGCAACACATATTACTGAAAAACCTCATCTCGAGACAGCTAGTAG
CTATGTTAGTATTGCAGAGTGCAGAGTTCAGAAGCTAGTTAATGTTTCGC
AAGAAGATGGGCTCAATGTTACAATGCCTGATTCGGTGGTTGCAAAAACA
AGTAAGAAGACTGACTTATATTAACCTTTATTCGACTTTTTTTCGTGACT
TTTTTTACATGAATCTGCCAATAAGAACGTGTATTCCCGTCCGAAAGTTC
AAAATCTGGGGTAACCTGTTTCAATTTTCCTAAAAAGGCTCAGAAATCTA
ATTGATTGTATTGACCTCTAGCCATTAAAATTTTTAAATCAAATTTAATA
AAATATAAAGATCTCTCGTATATATTCCATATATCAGATGCATGTAGCCT
ACTAGCTCCTATCTTGCACCTAATAAGTCCAGCAGGGATGTAAATTTTCG
GGATATCTTTCAGGTTCGACTGACGATTTCACCGTGTCGATGAATCTCTA
CAAATCAGAAGATTTCAACAAAATGTTCAGCTATCCTGCTGTTATCGATA
TTACTGACCGATTCAATTTGGAAATCGAACTGGTAACTAGTTCCAGTCTT
TTTATCATACCTCAAAATTGTCACGCAACGCCTGACTCAAATCGAGATAA
TGCTCTCAAAGAAGACATCGTCACAGACAGGTATTTAATGAAAACAGTAG
AGGTTTGGGGACAAAAGAAGTTTTTTCGCGTTGGTGCAATGCAGATGCTC
CATCCGACCGACCTAAAACGCTTTCTCGTGTCTCCACCCCATTTTTCTTT
CTACCAATAAAAGTGAAATCTGACTTTTGTCCCTCACTTTTTGTCCCATG
AAACAAAAAAAGAAACCATGAGACACANGAAATCTAATTGATTGTATTGA
CCTCTAGCCATTAAAATTTTTAAATCAAATTTAATAAAATATAAAGATCT
CTCGTATATATTCCATATATCAGATGCATGTAGCCTACTAGCTCCTATCT
TGCACCTAATAAGTCCAGCAGGGATGTAAATTTTCGGGATATCTTTCAGG
TTCGACTGACGATTTCACCGTGTCGATGAATCTCTACAAATCAGAAGATT
TCAACAAAATGTTCAGCTATCCTGCTGTTATCGATATTACTGACCGATTC
AATTTGGAAATCGAACTGGTAACTAGTTCCAGTCTTTTTATCATACCTCA
AAATTGTCACGCAACGCCTGACTCAAATCGAGATAATGCTCTCAAAGAAG
ACATCGTCACAGACAGGTATTTAATGAAAACAGTAGAGGTTTGGGGACAA
AAGAAGTTTTTTCGCGTTGGTGCAATGCAGATGCTCCATCCGACCAACCT
AAAACGCTTTCTCGTGTCTCCACCCCATTTTTCTTTCTACCAATAAAAGT
GAAATCTGACTTTTGTCCCCTCACTTTTTGTCCCATGAAACAAAAAAAGA
AACCATGAGACACACACTTTTTTTCTTGTGTTGGTGGGATAGAGAAAGTT
GCATTGCACCAACGCGAAAAAAAGTTCTCTTGTCCCCAGGCTTTAAATAC
AAAGAAATTCCACAAATATGATGATTATGAACTTTTGATTTGAAGAATCC
CTCTCAAATAAACTGTCAAGTGACTCGAAATGATTAGGTGTAAGCTGCTA
ACCCTCCCTCCAACTTCAATTTGCTATTACGATTTTAATAGTTCAATTCT
AAAAATGCATGCTTCATTTTTGTTTTGAGAGCAGCCTAGTAGTCTAAAGT
CTGCACACAGACCTGATATCTACGGCTAATTTCAAAATTCATTGCGGTAG
AGGGTCTGTTGTCATTGTCTTTTTCTGATTTGAGATTTTTCAAACCGACC
GCTACGATAAAATGCAGCGGGTGACAGAGGGCCGACGACGAGAGAACTGT
TGCTATTTCTAAATCATACTTTTTACGCAGAGGTTTCCGTACGGCAATTT
TTTTACTAAACAGAGAATGCGCCAAGAGTGTACTACGAAATGATAAACGT
GAAATTCTTTAAACGGGATCCAGCGCCAGTTCGGCGCGATTTCCATGGAC
AGAAAGGGGTAAGGAGTAGAGATTACAATCGGGAACCCTTTGTTTCAGCT
AATGACCCATGTTCATACGTTAAAGTTTCTCATCACTTGAGATTTGGTTA
CGGCAAAGAAATGTTCATGTTCGTTGCGAAATGTTTTGGTGCAGTTTCGT
TCCGATGAATAAAGTGGAACGTAACTGATTCGATACCTTTTTCTTTTTAA
GGCCGGTCTCCACTCTCGCTCNGAACGTAACTGATTCGATACCTTTTTCT
TTTTAAGGCCGGTCTCCACTTTCGCTCCACTTTTTCCGTTACGTCAATTT
CAACCAATGGAATTGCTTCATTTTTCAACCGCGACCAACGACCTTACAAA
AACGTCAAAAAGTATTCGCTCATGTCGCGCAAAGTGGAGACCGGCCTTTA
AAGTCTCCTTTTTTGACGTTTCAAATTTTTGGTGTGCACGCAGGCTTTCA
GAACGTTTCATTTCGAAACGATGTGGAACATCAACGTCTGAACATTACAA
TGTCTTAGATGATTTAGCCACCATCATATCTACTTCTCGATCACATACAT
CATACACGTTTTTTTTTGTTTTTTTTTTAAGAAAATAGTTTTACCAAGCA
GCCTCAATGATTCTTAAGAAATCGGCCTTTTGAGCCTTAGATGTTTCTTA
CATGTTTCTAAACCTTTTGACATAATCAGTCTGGTTTTCATGCAAAGAAA
AAAAACATTTGTTTTGATTATGATTCTGAGCCACATGTTTCTTAAAAGTG
TGTTTCTTAAAAAAAACAAAAAGGTGTAATTGATTTAAAACTTATCAACT
CTTCTCAATTTCTTAGATGTCCAACACCTGGTCACGATTTCCAAGAAGAA
ACACCAGCTGGCAATGGCAACAAATTCCGATTCTCTTTGAATACGTTTAG
ATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACAGCTCACGTAT
GCATGAAAAACAGCACAGATCCAAAATGTCGATTCGGTTGTGTCGATAAT
CAAAGAAGAAGAAGGAGATCAGAAGATCAGACAAGACTTTTTGGTGATTT
GACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTGCTTCCAACCA
ACAGCCAAGGTATAGAACTTTCATCAAAATTAAAACTAAAAAAGGTTGTA
CTTCCCAAAAGCGTTTAACATAATTAAGTGCAATCCTTCCATAACTTCAA
ACACTAAATTATATCCAGATGTTCTTAACTTTATGAGTTTTAAGCCTTAA
AATGTTCTCATTTTAACCATTTTGTGAGTATTTTTGTGCGATTTCCTAAT
AAATTTGGTGTTTTTGGTGGTTTGGAATTTTAGAGTCCGTGAAGCCTTGA
AATGTTCTTAACTTGCGTTCTTAATATTTTTGCCATCGAGGTCGCGTGTG
TTCTTATTTAGTTTGATCTTTCTTTGTGTTTAGATGCTACAAAGACCACA
ACCAACCGTTCCAACGANTTTTTGCCATCGAGGTCGCGTGTGTTCTTATT
TAGTTTGATCTTTCTTTGTGTTTAGATGCTACAAAGACCACAACCAACCG
TTCCAACGAAAAATCAACGGGAAACGGTTTCTTTCAAAACAAAACAAATA
TTCTTTTGGTCACATTAATTGTGATTATGACACTCATCATCCTCGGTGCC
GTAGCTTTTGTCTTCTATCGAAGAAGCGCCGTTTTAACAAAAAATATGGC
GATGAACACTGGGGTCAGTAATAAAGCATATCAGGTTGAGTATTAAATAT
CGGATATAAATTTGCAGCAAACGATTTTATCTGGTGTGATAATATATTAC
GAGAACTGATTTTCATATAGAAATCAAGGCAAAGAATAAGCAAACACAGA
CAAACCCTCATGGAAACGCACATTGTCCAATTATTTGTTGGCCTTTGATG
GATTATTTTAATATAACATATATTCTGGAGTATAACTATATTAATCAATT
CTATCCTGTATCATAAAACCAATAACATTTATTTTATCATATTTTGGAGA
TGAAAGTTTGACTAATCAAGACTTCGTGAGCAAAAAAAACATCTATATCT
CATAAAAAAATTGAGTAATTTGGCTAAGAACATTGATGTATGCTTATTAA
TAGTGATTCTTATAGATAAACATGCGTTTTCTGAGCCAACAAANATCTAT
ATCTCATAAAAAAATTGAGTAATTTGGCTAAGAACATTGATGTATGCTTA
TTAATAGTGATTCTTATAGATAAACATGCGTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041761XLOC_041761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066779-exon-scaffold_46-1575043694:178856..179015TCONS_00066779-exon-scaffold_46-1575043694:178856..179015Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1575043694:178307..178480TCONS_00066779-exon-scaffold_46-1575043694:178307..178480Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1575043694:177639..177874TCONS_00066779-exon-scaffold_46-1575043694:177639..177874Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1575043694:177365..177527TCONS_00066779-exon-scaffold_46-1575043694:177365..177527Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1575043694:176250..176466TCONS_00066779-exon-scaffold_46-1575043694:176250..176466Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1575043694:174357..174649TCONS_00066779-exon-scaffold_46-1575043694:174357..174649Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1575043694:173231..173940TCONS_00066779-exon-scaffold_46-1575043694:173231..173940Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:178856..179015TCONS_00066779-exon-scaffold_46-1510915933:178856..179015Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:178307..178480TCONS_00066779-exon-scaffold_46-1510915933:178307..178480Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:177639..177874TCONS_00066779-exon-scaffold_46-1510915933:177639..177874Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:177365..177527TCONS_00066779-exon-scaffold_46-1510915933:177365..177527Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:176250..176466TCONS_00066779-exon-scaffold_46-1510915933:176250..176466Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:174357..174649TCONS_00066779-exon-scaffold_46-1510915933:174357..174649Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1510915933:173231..173940TCONS_00066779-exon-scaffold_46-1510915933:173231..173940Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:178856..179015TCONS_00066779-exon-scaffold_46-1491911889:178856..179015Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:178307..178480TCONS_00066779-exon-scaffold_46-1491911889:178307..178480Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:177639..177874TCONS_00066779-exon-scaffold_46-1491911889:177639..177874Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:177365..177527TCONS_00066779-exon-scaffold_46-1491911889:177365..177527Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:176250..176466TCONS_00066779-exon-scaffold_46-1491911889:176250..176466Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:174357..174649TCONS_00066779-exon-scaffold_46-1491911889:174357..174649Clytia hemisphaericaexon
TCONS_00066779-exon-scaffold_46-1491911889:173231..173940TCONS_00066779-exon-scaffold_46-1491911889:173231..173940Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:173231..179015 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.589727	0	0	0	0	3.32913	2.04496	0	0	150.679	161.935	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066779 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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