TCONS_00066780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066780
Unique NameTCONS_00066780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066780 ID=TCONS_00066780|Name=TCONS_00066780|organism=Clytia hemisphaerica|type=transcript|length=1238bp
aaaaagtgtatatttgaaaattgattaaaataaaTCTGAAAAAGATGACG
GTATATCAATGTCTAGGCTTATTTATGCTCCTTTGTCAACTCTCCCAGTT
TACAGCTGCGCAGGAATTATCATGCACAGACAAGCTTCCTAATTGTTCGG
TTTTATCTCCCATGCAATGTAGATCCACATCGGGTCAAACTAAATGTCCT
ATAAGTTGTGCAAATCCGAAATGTTTCACAACcaccacaacaacaaccac
caccacaacaacaacagccGTCCCTCCTACAATTTCTTCATCAGAACTTA
ACAGCACTGTCTCAGTGAGATGTGATGACGAAAAGATGACCATTGTTATT
CCCAAAAGTGAAATCCCGAACCTAGAAGGCGATATTTCTCAATACAATAT
TTCATGGAATGATTTTACTTGTGGACCAAGTGAAAAATCCAATAAAACAC
ATGTGATTATGGTGGCTGGTTATTCGTCTTGTGGCACTAAAGCTGTGGAT
GATGGGGAAAACATCGTTTTTCGAAATAAGGTTTCTATCAGCAAAAATGC
AACACATATTACTGAAAAACCTCATCTCGAGACAGCTAGTAGCTATGTTA
GTATTGCAGAGTGCAGAGTTCAGAAGCTAGTTAATGTTTCGCAAGAAGAT
GGGCTCAATGTTACAATGCCTGATTCGGTGGTTGCAAAAACAAGTTCGAC
TGACGATTTCACCGTGTCGATGAATCTCTACAAATCAGAAGATTTCAACA
AAATGTTCAGCTATCCTGCTGTTATCGATATTACTGACCGATTCAATTTG
GAAATCGAACTGGTAACTAGTTCCAGTCTTTTTATCATACCTCAAAATTG
TCACGCAACGCCTGACTCAAATCGAGATAATGCTCTCAAAGAAGACATCG
TCACAGACAGATGTCCAACACctggtcacgatttccaagaagaAACACCA
GCTGGCAATGGCAACAAATTCCGATTCTCTTTGAATACGTTTAGATTCAA
AAACACGAACGGTATGGTCTACATTCATTGCACAGCTCACGTATGCATGA
AAAACAGCACAGATCCAAAATGTCGATTCGGTTGTGTCGATAAtcaaaga
agaagaaggagatcAGAAGATCAGACAAGACTTTTTGGTGATTTGACCAA
AGATTATGACATTCGAACTGGATTGATTGTTGTGCTTCCAACCAACAGCC
AAGATGCTACAAAGACCACAACCAACCGTTCCAACGAN
Run BLAST on NCBI

transcript from alignment at scaffold_46:173998..178975-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066780 ID=TCONS_00066780|Name=TCONS_00066780|organism=Clytia hemisphaerica|type=transcript|length=4978bp|location=Sequence derived from alignment at scaffold_46:173998..178975- (Clytia hemisphaerica)
AAAAAGTGTATATTTGAAAATTGATTAAAATAAATCTGAAAAAGATGACG
GTATATCAATGTCTAGGCTTATTTATGCTCCTTTGTCAACTCTCCCAGTT
TACAGCTGCGCAGGAATTATGTAAGTAACTTTTTCTACATTTATATAAGC
ATTATATCTAGGTTCAGATATGGCAAAAATTTGAATGCGTAGTTAACCCA
GGGGCGGGGGTACTTGTGACTAAAACACTCTCAAAGGGTCTCGAAAATGA
CAATTAAATCAAAAGGTACAATTTTTGATTTTTTGCATGCTCGAACGTGC
ATCTCACTTCGCAAACCTAGTACACCCCCCCGCGATATTGAACTAATTAA
TGAAAATGTTATGCTGGTGGAGGTATTGGCCAGCCTGGACTTAAGAGCCT
GTAGTAGATGGATACAGTATTTCTATTGCTACACGAACAATAAATAGAAA
CAAGTAGTATATTCTTAAAATTTGAAATTCTAATTCTTTTTTTAGCATGC
ACAGACAAGCTTCCTAATTGTTCGGTTTTATCTCCCATGCAATGTAGATC
CACATCGGGTCAAACTAAATGTCCTATAAGTTGTGCAAATCCGAAATGTT
TCACAACCACCACAACAACAACCACCACCACAACAACAACAGCCGTCCCT
CCTACAATTTCTTCATCAGGTACTTTTGATTATCTAATCGTCCAGAAGGA
GCACTGTTACTTCGCGATACTAGGACCTAAATAAATATCTCAAACACCTT
TGTAAACCCTACACTAAGCTCCGCCTATGATCGACGAGATATCATTGAAG
AAGAAACTATTGAAGCGTTAAAAATTTGCCTAACGTCCAACGGGTCTACA
TTGGGGTACATTGCACTTTTTCAAAAAAAAGTGTTGCTAGATCTTTACCC
AGCTGGCACATATCTTATATAAAAGACTTCTTATATAAAAAAACTTTTTC
TATAAGAAACTCTTTTTTTTCACTATAGGATGAGCAAAAGCCTAGGACCC
AGCTCAAATCCTAGCCTCATCTAATATTCCGCTAAGCTGATAAATAAGAT
ACCATATCATATAAGATATGTTGGATTGAAACAGGATTTTTATCTATTTA
GAACTTAACAGCACTGTCTCAGTGAGATGTGATGACGAAAAGATGACCAT
TGTTATTCCCAAAAGTGAAATCCCGAACCTAGAAGGCGATATTTCTCAAT
ACAATATTTCATGGAATGATTTTACTTGTGGACCAAGTGAAAAATCCAAT
AAAACACATGTGATTATGGTGGCTGGTTATTCGTCTTGTGGCACTAAAGC
TGTGGATGATGGGGAAAACATCGTTTTTCGAAATAAGGTACCTAATCATA
TACTTTAATGGGATAAACTTTCGCGGGGATTTTTTTTGGGACACTTAAAA
CTTGAACGACTTTTAAAAAATAAATTTTCCAAAAACTTTTGCTTTTAGGT
TTCTATCAGCAAAAATGCAACACATATTACTGAAAAACCTCATCTCGAGA
CAGCTAGTAGCTATGTTAGTATTGCAGAGTGCAGAGTTCAGAAGCTAGTT
AATGTTTCGCAAGAAGATGGGCTCAATGTTACAATGCCTGATTCGGTGGT
TGCAAAAACAAGTAAGAAGACTGACTTATATTAACCTTTATTCGACTTTT
TTTCGTGACTTTTTTTACATGAATCTGCCAATAAGAACGTGTATTCCCGT
CCGAAAGTTCAAAATCTGGGGTAACCTGTTTCAATTTTCCTAAAAAGGCT
CAGAAATCTAATTGATTGTATTGACCTCTAGCCATTAAAATTTTTAAATC
AAATTTAATAAAATATAAAGATCTCTCGTATATATTCCATATATCAGATG
CATGTAGCCTACTAGCTCCTATCTTGCACCTAATAAGTCCAGCAGGGATG
TAAATTTTCGGGATATCTTTCAGGTTCGACTGACGATTTCACCGTGTCGA
TGAATCTCTACAAATCAGAAGATTTCAACAAAATGTTCAGCTATCCTGCT
GTTATCGATATTACTGACCGATTCAATTTGGAAATCGAACTGGTAACTAG
TTCCAGTCTTTTTATCATACCTCAAAATTGTCACGCAACGCCTGACTCAA
ATCGAGATAATGCTCTCAAAGAAGACATCGTCACAGACAGGTATTTAATG
AAAACAGTAGAGGTTTGGGGACAAAAGAAGTTTTTTCGCGTTGGTGCAAT
GCAGATGCTCCATCCGACCGACCTAAAACGCTTTCTCGTGTCTCCACCCC
ATTTTTCTTTCTACCAATAAAAGTGAAATCTGACTTTTGTCCCTCACTTT
TTGTCCCATGAAACAAAAAAAGAAACCATGAGACACANGAAATCTAATTG
ATTGTATTGACCTCTAGCCATTAAAATTTTTAAATCAAATTTAATAAAAT
ATAAAGATCTCTCGTATATATTCCATATATCAGATGCATGTAGCCTACTA
GCTCCTATCTTGCACCTAATAAGTCCAGCAGGGATGTAAATTTTCGGGAT
ATCTTTCAGGTTCGACTGACGATTTCACCGTGTCGATGAATCTCTACAAA
TCAGAAGATTTCAACAAAATGTTCAGCTATCCTGCTGTTATCGATATTAC
TGACCGATTCAATTTGGAAATCGAACTGGTAACTAGTTCCAGTCTTTTTA
TCATACCTCAAAATTGTCACGCAACGCCTGACTCAAATCGAGATAATGCT
CTCAAAGAAGACATCGTCACAGACAGGTATTTAATGAAAACAGTAGAGGT
TTGGGGACAAAAGAAGTTTTTTCGCGTTGGTGCAATGCAGATGCTCCATC
CGACCAACCTAAAACGCTTTCTCGTGTCTCCACCCCATTTTTCTTTCTAC
CAATAAAAGTGAAATCTGACTTTTGTCCCCTCACTTTTTGTCCCATGAAA
CAAAAAAAGAAACCATGAGACACACACTTTTTTTCTTGTGTTGGTGGGAT
AGAGAAAGTTGCATTGCACCAACGCGAAAAAAAGTTCTCTTGTCCCCAGG
CTTTAAATACAAAGAAATTCCACAAATATGATGATTATGAACTTTTGATT
TGAAGAATCCCTCTCAAATAAACTGTCAAGTGACTCGAAATGATTAGGTG
TAAGCTGCTAACCCTCCCTCCAACTTCAATTTGCTATTACGATTTTAATA
GTTCAATTCTAAAAATGCATGCTTCATTTTTGTTTTGAGAGCAGCCTAGT
AGTCTAAAGTCTGCACACAGACCTGATATCTACGGCTAATTTCAAAATTC
ATTGCGGTAGAGGGTCTGTTGTCATTGTCTTTTTCTGATTTGAGATTTTT
CAAACCGACCGCTACGATAAAATGCAGCGGGTGACAGAGGGCCGACGACG
AGAGAACTGTTGCTATTTCTAAATCATACTTTTTACGCAGAGGTTTCCGT
ACGGCAATTTTTTTACTAAACAGAGAATGCGCCAAGAGTGTACTACGAAA
TGATAAACGTGAAATTCTTTAAACGGGATCCAGCGCCAGTTCGGCGCGAT
TTCCATGGACAGAAAGGGGTAAGGAGTAGAGATTACAATCGGGAACCCTT
TGTTTCAGCTAATGACCCATGTTCATACGTTAAAGTTTCTCATCACTTGA
GATTTGGTTACGGCAAAGAAATGTTCATGTTCGTTGCGAAATGTTTTGGT
GCAGTTTCGTTCCGATGAATAAAGTGGAACGTAACTGATTCGATACCTTT
TTCTTTTTAAGGCCGGTCTCCACTCTCGCTCNGAACGTAACTGATTCGAT
ACCTTTTTCTTTTTAAGGCCGGTCTCCACTTTCGCTCCACTTTTTCCGTT
ACGTCAATTTCAACCAATGGAATTGCTTCATTTTTCAACCGCGACCAACG
ACCTTACAAAAACGTCAAAAAGTATTCGCTCATGTCGCGCAAAGTGGAGA
CCGGCCTTTAAAGTCTCCTTTTTTGACGTTTCAAATTTTTGGTGTGCACG
CAGGCTTTCAGAACGTTTCATTTCGAAACGATGTGGAACATCAACGTCTG
AACATTACAATGTCTTAGATGATTTAGCCACCATCATATCTACTTCTCGA
TCACATACATCATACACGTTTTTTTTTGTTTTTTTTTTAAGAAAATAGTT
TTACCAAGCAGCCTCAATGATTCTTAAGAAATCGGCCTTTTGAGCCTTAG
ATGTTTCTTACATGTTTCTAAACCTTTTGACATAATCAGTCTGGTTTTCA
TGCAAAGAAAAAAAACATTTGTTTTGATTATGATTCTGAGCCACATGTTT
CTTAAAAGTGTGTTTCTTAAAAAAAACAAAAAGGTGTAATTGATTTAAAA
CTTATCAACTCTTCTCAATTTCTTAGATGTCCAACACCTGGTCACGATTT
CCAAGAAGAAACACCAGCTGGCAATGGCAACAAATTCCGATTCTCTTTGA
ATACGTTTAGATTCAAAAACACGAACGGTATGGTCTACATTCATTGCACA
GCTCACGTATGCATGAAAAACAGCACAGATCCAAAATGTCGATTCGGTTG
TGTCGATAATCAAAGAAGAAGAAGGAGATCAGAAGATCAGACAAGACTTT
TTGGTGATTTGACCAAAGATTATGACATTCGAACTGGATTGATTGTTGTG
CTTCCAACCAACAGCCAAGGTATAGAACTTTCATCAAAATTAAAACTAAA
AAAGGTTGTACTTCCCAAAAGCGTTTAACATAATTAAGTGCAATCCTTCC
ATAACTTCAAACACTAAATTATATCCAGATGTTCTTAACTTTATGAGTTT
TAAGCCTTAAAATGTTCTCATTTTAACCATTTTGTGAGTATTTTTGTGCG
ATTTCCTAATAAATTTGGTGTTTTTGGTGGTTTGGAATTTTAGAGTCCGT
GAAGCCTTGAAATGTTCTTAACTTGCGTTCTTAATATTTTTGCCATCGAG
GTCGCGTGTGTTCTTATTTAGTTTGATCTTTCTTTGTGTTTAGATGCTAC
AAAGACCACAACCAACCGTTCCAACGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041761XLOC_041761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066780-exon-scaffold_46-1575043694:178856..178975TCONS_00066780-exon-scaffold_46-1575043694:178856..178975Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1575043694:178307..178480TCONS_00066780-exon-scaffold_46-1575043694:178307..178480Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1575043694:177639..177874TCONS_00066780-exon-scaffold_46-1575043694:177639..177874Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1575043694:177365..177527TCONS_00066780-exon-scaffold_46-1575043694:177365..177527Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1575043694:176250..176466TCONS_00066780-exon-scaffold_46-1575043694:176250..176466Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1575043694:174357..174649TCONS_00066780-exon-scaffold_46-1575043694:174357..174649Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1575043694:173998..174032TCONS_00066780-exon-scaffold_46-1575043694:173998..174032Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:178856..178975TCONS_00066780-exon-scaffold_46-1510915933:178856..178975Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:178307..178480TCONS_00066780-exon-scaffold_46-1510915933:178307..178480Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:177639..177874TCONS_00066780-exon-scaffold_46-1510915933:177639..177874Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:177365..177527TCONS_00066780-exon-scaffold_46-1510915933:177365..177527Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:176250..176466TCONS_00066780-exon-scaffold_46-1510915933:176250..176466Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:174357..174649TCONS_00066780-exon-scaffold_46-1510915933:174357..174649Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1510915933:173998..174032TCONS_00066780-exon-scaffold_46-1510915933:173998..174032Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:178856..178975TCONS_00066780-exon-scaffold_46-1491911889:178856..178975Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:178307..178480TCONS_00066780-exon-scaffold_46-1491911889:178307..178480Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:177639..177874TCONS_00066780-exon-scaffold_46-1491911889:177639..177874Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:177365..177527TCONS_00066780-exon-scaffold_46-1491911889:177365..177527Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:176250..176466TCONS_00066780-exon-scaffold_46-1491911889:176250..176466Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:174357..174649TCONS_00066780-exon-scaffold_46-1491911889:174357..174649Clytia hemisphaericaexon
TCONS_00066780-exon-scaffold_46-1491911889:173998..174032TCONS_00066780-exon-scaffold_46-1491911889:173998..174032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:173998..178975 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.0141	34.6906	44.1387	41.9512	0	0	0	0	0	0	0	0.167805	0	0	0	0	0	0.448047	0	0	37.7855	24.9562	12.8633	11.5455	0.580624	0	0	0	5.43267	7.43309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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