TCONS_00066782 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066782
Unique NameTCONS_00066782
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2587

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066782 ID=TCONS_00066782|Name=TCONS_00066782|organism=Clytia hemisphaerica|type=transcript|length=2587bp
TTAGAAGTCAATTTCAGATATAATAAATCAACATTCCAAGTAAATAAAAA
GATGACATTAGATTGGCCATTGCATTATGAAGTTGTTGCCAAATGCTCTA
AAAGTAAAGGACGAGCCTCACTGATGAGGCTACCTCATTTTACAGTTGAG
ACACCTATCTTTATGCCTGTTGGTACCCAAGGTACAATGAAAGGGTTGAC
CTGTGATCAGTTACGTGAACTTAATTGTCAAATCATCCTGGCCAATACTT
ATCACTTAGGAATGAGACCAGGTGAGGATGTATTGAATAAAGCAGGAAGG
TTACACAAATTCATGGACTGGGACAGGGGAATGCTCACGGACAGTGGAGG
ATTTCAAATGGTTTCTCTCATCTCTCTGTCAGAAGTCACTGAGGAAGGTG
TACGTTTTAGTTCGCCTTACGATGGTCGAGATATTCTTCTTACACCAGAA
AAATCTATGCAGATACAGAATGCTATTGGAGCTGATATCATGATGCAATT
AGATGACGTAGTCGATGTCAAAGTTACGGGACCGAGAGTAGAAGAAGCAA
TGCATCGCTCCATTCGATGGCTCGATCGGTGCATTGAAGGTCATCAACGG
AAAGAACATCAGAATTTATTCCCTATCATTCAAGGTGGATTGAATTTGGA
ACTGAGGACAAAATGTATCGAAGCCATGGTCAAACGCAACATGCCAGGTT
ACGCAGTTGGTGGTTTGAGCGGTGGTGAGGCCAAGGATGACTTTTGGAAA
GTCGTTCATCATTGCACTAATCTTTTACCGAGAGATAAACCTATCTATGT
TATGGGAGTTGGgtATGCGATAGATTTGGTTGTATGTTCTGCGTTAGGAG
CTGATATGTTTGATTGTGTCTACCCCACGCGTACTGCAagGTTCGGTACA
GCATTGGTGCCATCTGGTCAGCTGCATCTCAAAACAAACCAATATGCTGA
CGATTTCAGGCCCATTGACGACCAATGTACTTGTTTAACGTGTCGCAAAT
ATACAAGAGCTTTTATCCATAGTTTGGTTGGCAAGGAATCAGTTGCTTGT
TACCTTTTATCCATCCATAATATCAAGTATCAGATGAACCTTATGACCAC
GTTACGTCAAAGTATAATCGACGATCGATTGGAAGATTATATACAACAAT
TCTTCTTGAAAATGTTCCCTAATAAAGACTATCCTTCGTGGTGCATAAAC
GCTCTTGATGCTGTCAATATACAACTTGTCACGTGATACTTACATAAGAA
TGAATAGTATGGTGGGATGGTTTTATAGGTGGATGGATGAGCAGGTTTTA
TTTATTTGTCTCACATTCTTATACTTTATTGGCTACAAGAGTTAtatgtt
ttcaaaataatggTATCTTTGAAATTAAGCTTtcgttttttatgtttttt
tttattgtcacCAGTCTCTCTGACCAAAGGCAGTCACGTCGTATCAAGTA
CGACTTTAGGAAGACTGCTTAAgcctttttaaagctttttgtaaattatt
taCATCTGCCGTGAAGCCGACTTAAAAGATCTCCGTCAAACAGTTTGAGC
ATAATAGAAAAATCGTTTTAATTACGTTTGAAAGTTACTCATGTTGAGAA
TTTTCAtgtttgcttcatttttcatttttgttcaatctacaattgaaaaa
tttatatGGAATATCgataaaataactttttcatgaaGTTTTTTATATGG
GCGTTGAATGACATTGACTATGGCTGGAACCATgaAATGTTTATGCTCAT
TGGTGGTTCTGTTGATCCTTGTTGTTCAGAGTTTGGGTGCTCCACGACAC
CGTCACACACACAACGAAAAAGCATCGGCTAGAAGTTATATCGACATTGA
TGCATCGGACCCTTTCAAAGTTCCTAAGAACAGTCATTATATGGAAAATG
ATATTcctgaaaatttcgaaaaagaagaaCCAGAATTGAAAGCCAGTGTC
TCGGAAGGCGAAGAAAGTCCCGCCCCTCAAGAACAGGGCGGAGATGAATC
TGAACACGAATCAAACGGAGAGCAACCGCCAAGTGAACCTCAAGAAGAAG
AGGGCGCCGGGCGTGAAGGTCCAGACGCCAAAGAAGGTGCGTCAAAAGAA
TTGCCTCAGGAGCAACCTTCTCAGGGACAAAATGGAGGAGGTTTGAACGA
CTTACCGCCAGGGATAACGGAAAAGATTGACGAGATAGCAAAGAACCAAG
GAAACAGTGACGGAAAACCCattgaaattaatgaaaatgatttgaaagGA
ATGGTGAACAATGCTGGCGGTGCACCTCAGGCTGAGGGCGGTCCTCCTGC
TGGGGAAGGTGCAGCAGAAGGGGAGGAAAATTAGATAGAGTGTACTTCTC
GACCTGTTTTGAAAAGCAACGCTTTATGGATGTATACCTGACAATGGACC
ATATCGAAAACTTTTATTACGCACacctttttcttctattttgtaatttt
ctttcgTTTGACAATTTTaaatagttttgacattttcGACAATAATTCGA
AGCTAGCAAAGATAAATGTAGGAATCAAATAAACCATTAGTCGTTTTGGT
GTTTCGGGTCTTATTTGCATTTTTCTAGGACTTTCAC
Run BLAST on NCBI

transcript from alignment at scaffold_46:207317..215828-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066782 ID=TCONS_00066782|Name=TCONS_00066782|organism=Clytia hemisphaerica|type=transcript|length=8512bp|location=Sequence derived from alignment at scaffold_46:207317..215828- (Clytia hemisphaerica)
TTAGAAGTCAATTTCAGATATAATAAATCAACATTCCAAGTAAATAAAAA
GATGACATTAGATTGGCCATTGCATTATGAAGTTGTTGCCAAATGCTCTA
AAAGTAAAGGACGAGCCTCACTGATGAGGCTACCTCATTTTACAGTTGAG
ACACCTATCTTTATGCCTGTTGGTACCCAAGGTACAATGAAAGGGTTGAC
CTGTGATCAGTTACGTGAACTTAATTGTCAAATCATCCTGGCCAATACTT
ATCACTTAGGAATGAGACCAGTAAGTATATTTGTGATATGCAGCATTGCA
ATATCTTCCACGGACCCAACAGCTGATTGGTTCGTGCAAGTGACGTATTG
ACTGATTTTACGTCATTTACAACAAATCAGCTGCTGGGTCATGTAGACAT
TGCAATGGCGCATATCATGAATTTGTGCATTTATTTTGTATTTTTCGCTT
TATTTGATTATGTTTGAAAAGTGTTTTTATGCTTATTAAAATGTTTTGTA
ACTATTATTTTAGCTCTTTTTAAAGATTTTATTTTTACATAAGTGTTCCC
GTTTCATATCAGAAACATAAGGACAGTGTGTCTGGCCTTTTGTTATATTG
TGCTGATATAAACAAAAAATGTTTTTCTTGCCCTCTTTTTGATCAATCTT
GATTCACATCCGTGTCAATCCAATGTGAAAAAGCAAACGATATCACTCTT
ATTTAAAATAAAACCTTTCAATTTCAATTAAAATCGTCAATCTTAGAAAC
TGAAATGTAATGTTGCTTGGGCGGTGATGATTGTTGCTCCCATGAACGTA
CTTGTGAGAGCATTTCGCTAGCCCACGCTTGTTCGAGTAATGTTGCCGTT
ACGCCACGGCTCACATGGTATCCTTGTAATGTACCGTGTCTGACCTGAAA
TATATTTCATTTATAATATGACAGTCTCTTTTTAACGTAAATTGCGAATT
AATTCTTTAGAAATAATAATAATGGGCTTTTCCAGAAAATATTAGAATTT
GGAAGGGGCGTGGAGTAACTTAAACCGCCGGACAAGGCAAATTTTGTAGA
TTTTTCACTACCCCCTGGACACTATAGCCTCCCCCCTCGTGTACGAACAT
TTTTTGGAAGAGCCTAATATAATAATGAATCACAAAACTCGAGATCTATC
ATTTTGATGCAGCAGGACAATAATCCGAAAATATTTCTGTGAATATCGTT
TGTTGAACAACGCAAAAAAAATCGTCTGATTTAAAAGGCCAACTCATTTA
TTTTATCTATCCCTACAATTCTCTAGGGTGAGGATGTATTGAATAAAGCA
GGAAGGTTACACAAATTCATGGACTGGGACAGGGGAATGCTCACGGTACG
TTTTCATATTGAATTGTTTAAATATTTGTAGCATTTCAGATCTTAATAAT
TTTCTACTTTATCCTCAATGTGTATGCTTTGACAACCTTTGATGTTTCTT
GAGATAATAAGCCTTTTTATACGTTTCCATCCATATTGACATTGAATGAA
TTAATGAAAGCCTTCTCTTTCTACTGAAATATAAATTGTTGCTTTTAACC
TATTGTAAATAACCTGACTTCCTTCTCTTAGGACAGTGGAGGATTTCAAA
TGGTTTCTCTCATCTCTCTGTCAGAAGTCACTGAGGTTTGCTACTAATTT
GTTAAACCATATGAAAGCCTTGGAAACTATTGTTAAAGATTATTACACGA
AACCTTTTTATTTGTTAATCTTTGGCAACTATTGCTAAAGGTCACTGCAC
GAAGCCTAATTTTATTTGTTAGAAAATATCTTTGTCCGAATCGGTCAAAA
GGATTTCTTCATTTTTGTGTACTCTTTGAATCGTCCATAAATACCTAGTA
TCTATGCATGCCTTACTGATCCCAATCTTTCNAACAACGCAAAAAAAATC
GTCTGATTTAAAAGGCCAACTCATTTATTTTATCTATCCCTACAATTCTC
TAGGGTGAGGATGTATTGAATAAAGCAGGAAGGTTACACAAATTCATGGA
CTGGGACAGGGGAATGCTCACGGTACGTTTTCATATTGAATTGTTTAAAT
ATTTGTAGCATTTCAGATCTTAATAATTTTCTACTTTATCCTCAATGTGT
ATGCTTTGACAACCTTTGATGTTTCTTGAGATAATAAGCCTTTTTATACG
TTTCCATCCATATTGACATTGAATGAATTAATGAAAGCCTTCTCTTTCTA
CTGAAATATAAATTGTTGCTTTTAACCTATTGTAAATAACCTGACTTCCT
TCTCTTAGGACAGTGGAGGATTTCAAATGGTTTCTCTCATCTCTCTGTCA
GAAGTCACTGAGGTTTGCTACTAATTTGTTAAACCATATGAAAGCCTTGG
AAACTATTGTTAAAGATTATTACACGAAACCTTTTTATTTGTTAATCTTT
GGCAACTATTGCTAAAGGTCACTGCACGAAGCCTAATTTTATTTGTTAGA
AAATATCTTTGTCCGAATCGGTCAAAAGGATTTCTTCATTTTTGTGTACT
CTTTGAATCGTCCATAAATACCTAGTATCTATGCATGCCTTACTGATCCC
AATCTTTCCAAACTGCAATACAATATATCCATTCATTTGCCGCAAATAAT
GTTTTTTATTGGCCTATTTTTTACTTATTTGCCTTTCACCTTTCAGGAAG
GTGTACGTTTTAGTTCGCCTTACGATGGTCGAGATATTCTTCTTACACCA
GAAAAATCTATGCAGATACAGAATGCTATTGGAGCTGATATCATGATGCA
ATTAGATGACGTAGTCGATGTCAAAGTTACGGGACCGAGAGTAGAAGAAG
CAATGCATCGCTCCATTCGATGGCTCGATCGGTGCATTGAAGGTCATCAA
CGGAAAGAACATCAGAATTTATTCCCTATCATTCAAGGTGGATTGAATTT
GGAACTGAGGACAAAATGTATCGAAGGTACTTGTTATTCTTGAAAAAATT
TCTTGCTGGGCCAGATAAATTTGATAAAAAAGTGAAAACTAAAAATTTAA
TTTTATTCATTGTTTGAAGTTTCGGTGTCTTCTTTGCACCATGATCATAA
GTATAGTAAATACTTGTTATTCGTTAGGAAAAGGAGCCAAGTGGGATGAG
TAATAAGCAAAAACCCTTTGTGCGCGCTGTTTTTTTTAAAAAAGTTGAAA
TTTTTCTAATTTTTTTTTTTAAAACTCAAAACATTAAAGTGCCATAAAAG
CTTGTAGCTTTTGATTTAGAAGATGGTTTTGTTACATTGATAAGCTATTT
TTATACTCCTTCTAAAAGCATTCGGCTTATGCCCCTTTAAATCAAGTTGA
TATTGATTAGCCTCGAGCTAACTAAGTACACATTGTACTACTTTGCATCA
ACTTTAAAGAAAAGAAACATAAACATAAACATAAACACCTTTTAAAAAAT
GCAGGGACGTTTCTACCATGGTTATCCTTATAACTTAGCATTTTTACGTT
TTGAATTATAGCCATGGTCAAACGCAACATGCCAGGTTACGCAGTTGGTG
GTTTGAGCGGTGGTGAGGCCAAGGATGACTTTTGGAAAGTCGTTCATCAT
TGCACTAATCTTTTACCGAGAGATAAACCTATCTATGTTATGGGAGTTGG
GTGAGTAAAAGTTTTCATTTCGAGATCTCATTTTTTAATTATATTTCACC
TCGTCTACTGTTCCACTGTTCTCATTTATTAAATTCCCGTAAACACTCAA
AATATGATATATCGAAAAGTGTCAACGATAAGGCTTTGCAACAGATTGAA
GTCTCGCTAATGGTTTGTTCTCGCAACTTCAGTTAAGCTAGTGCGAATGT
CTGTCTGTCAGTCTGTCCAAAAAATCTGGGACGAAAAATATTGTTTAGCC
TGCCAGTGCGGTGCCCTTGTCCCTGTTGTCAATTTATAAAGTAAAGGTAA
AGGTTTTGAAATTTATTTTTGTTTAGGTATGCGATAGATTTGGTTGTATG
TTCTGCGTTAGGAGCTGATATGTTTGATTGTGTCTACCCCACGCGTACTG
CAGTAAGAAATAGTTTATCAAATATTTTTTCATATTATTTCTCCGTTAAA
AACTTCATCCGTTGTGCTTTTCAAAGGTTAAAGAAAGTCTTTCGAAAGAT
GGCACTCAAATTTTCAATTTTGTCTAAATCCAAAGATTGACCAATTTTTC
TTGACTGATCGGTTGATACTTCTAGACTCCTGAATGCCTGATAATCTTGA
AATCCTCATATAAAAGCTTTTCAATAAACGCCCAATGTTAACAAATACAT
TCAATCGAACGAAACTTAAACATTTTTAAATGTAATTTTTTGATTAAAAT
TTCTTTTCAGAGGTTCGGTACAGCATTGGTGCCATCTGGTCAGCTGCATC
TCAAAACAAACCAATATGCTGACGATTTCAGGCCCATTGACGACCAATGT
ACTTGTTTAACGTGTCGCAAATATACAAGAGCTTTTATCCATAGTTTGGT
TGGCAAGGAATCAGTTGCTTGTTACCTTTTATCCATCCATAATATCAAGT
ATCAGGTCAGGATTTTCAATATAAATTATCCAGTTTGATGGTTTTATTTA
TTGAATAATTCCACCCATAAGTCCACACAACAATCAAATCAATCTGATTG
GTTGAATCTGAAAAGTATGATGTAATTGAGTCAAATAAACCAATCAGTTG
AGCGGACTGTGGGATAGTTAGCCGTAAGTACGGTGATGATGCCAGTGAGT
GGTCTTTTCAAATGTTACTTTGAACGAAGAAATTTCCTTTTCTTGTGCTA
TGACCAAATTTTATCACTAAAAAGATGAGACTTCAGTGCTTGCTTTCGAG
TGTTCAACTCTGTTTTAGATAAACCAATTAGCGGGGACTCGATATCTGAC
AGCTAAGGTGACGNGTGTTCAACTCTGTTTTAGGTAAACCAATTAGGGGG
GACTCGATTTCTGACAGCTAAGGTGACATTTTTAAACAGCTTGGAGCTTG
GATCATCACTCACTATTTTATTCCCACAATTTTGCTTTCAGATGAACCTT
ATGACCACGTTACGTCAAAGTATAATCGACGATCGATTGGAAGATTATAT
ACAACAATTCTTCTTGAAAATGTTCCCTAATAAAGACTATCCTTCGTGGT
GCATAAACGCTCTTGATGCTGTCAATATACAACTTGTCACGTGATACTTA
CATAAGAATGAATAGTATGGTGGGATGGTTTTATAGGTGGATGGATGAGC
AGGTTTTATTTATTTGTCTCACATTTTTATACTTTATTGGCTACAAGAGT
TATATGTTTTCAAAATAATGGTATCTTTGAAATTAAGCTTTCGTTTTTTA
TGTTTTTTTATTGTCACTAGTCTAACTGACCAAAGGCAGTCACGACGTAT
CAAGTACGACTTTAGGAAGACCGCTTAAGCCTTTTTAACCCTATTAGCCC
CAGGGGGGGGGGGTAGAATCTACCACGCTGGAGTTCTTTTGTTTATATCT
CAAAGAAAAATTTTTTAAACGACTTAAAACTTTCTGACTTTTAGTAAAAT
CTTATTAAGAGTACTTGTGCAAAATTTTAGGGTCATAGGTTGTCCATATC
AGGTTTTATGACTTTATCGTGAAACATGACATAAAACCCAGCTAAAATCA
CTTAAAACTCAAAACTTTAAAGTGCTGATAACTTCTAAACTATTTATTCA
ATCATTTTCAAATTTTGACACGTGATAGGCATTGATAATACAAATTTAAA
AAATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAA
AATTTTACTCATCTTCAGCATAGATTTTAAGAAAAACTCTTCATGGAAAT
TGCAAAACCGGCAATTATGTTAAAGAACAGTCTTTTACCTTTCAAAATCT
TCAAACAGAATTGAAATATCTTTATTGGTTCAACTGTAATAGACATTTTT
GTAAACCATATATTGGGACTTTTTTTCCAAAAGGTCGAAATTTTGTGATG
ACGTCATCAGTTTTTGCATGACGTCATCAATTTTTTTTTCTTCCTGGAAA
ATTCTATCATGATGGAGAAAATCTGTACCAAATTTCATGGCCATAGCTCT
TCTAGATCGAAAATAATCGAGGGTGGTAGATTCTACCCCCCCCCCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGAGCAGGTTTTATTTATTCGTCTCACATTCTTATACTTTATTGGC
TACAAGAGTTATATGTTTTCAAAATAATGGTATCTTTGAAATTAAGCTTT
CGTTTTTTATGTTTTTTTTTATTGTCACCAGTCTCTCTGACCAAAGGCAG
TCACGTCGTATCAAGTACGACTTTAGGAAGACTGCTTAAGCCTTTTTAAA
GCTTTTTGTAAATTATTTACATCTGCCGTGAAGCCGACTTAAAAGATCTC
CGTCAAACAGTTTGAGCATAATAGAAAAATCGTTTTAATTACGTTTGAAA
GTTACTCATGTTGAGAATTTTCATGTTTGCTTCATTTTTCATTTTTGTTC
AATCTACAATTGAAAAATTTATATGGAATATCGATAAAATAACTTTTTCA
TGAAGTTTTTTATATGGGCGTTGAATGACATTGACTATGGCTGGAACCAT
GTAAGAATAATTCTTTTCATTTTTACAACAGTTTACTTTTTGTTTATCTT
ATTTTAAATATCAATTCAAGCATTTTCTACTCGTTGTTAAAGCTTTTCTC
TCTGCCGTCTCAAATTGTTAAATTATGAGCCACAGTTGTTGAACACACTA
CTTTTTCAAGTGGCCGATGAAATTTCCAAGCCAAATTTGATCAGGGCCAA
CATTGAATATGATAGAAGGTTTCTCTTATTACACGACTATAGATTCATCG
GGAGTCCTTACATCAAAATTGATTGATTGTGGGAAAAAATTCTACTGTTT
CAAAAGGATTTCCCTTGTTTTGGATATCTGGGTGACTTTTAGCCGAATTT
CAGAAACTAGGGATCCCTCGGGGGCAAATGGAATAAAGGGAAACTGGCCA
TCGGTCACTGGATAGAGGAGTGTGTTTGTGTTCAATAACTCTGGCTGGGA
GATAAAAATGATTCGATTTTAGCAGAATTTCAGTGGAGTATTATCAAAAA
AGTAAGTAATTTATAGCATATCCTAAAATTTATAACCCGAACGAATAAAA
AAACAGTAAAAAGCTCATGGTTATTGTTTTTTTTCTCAGGAAATGTTTAT
GCTCATTGGTGGTTCTGTTGATCCTTGTTGTTCAGAGTTTGGGTAAGTAA
TAATTTCTTAATTTCTTAATTTTAGATCATTCAGTGAGATAGGGGTTGTC
TTTTCTGACTCTCTTTTTAGTGTGAGAAATGGTGTTTTATGTCACCAGGC
TGTCAGGAGAAATTAATAGTCTCTGGTTCTGTTGACCAGAGTTTAGAGGT
GTAGAAAAAAAATCGAATCAGCTTAATTTTAAACATATTGATATTATTAT
CGCTGTAATGACTGCCTTTTTTCGGTGTACAAACTTTCTCTCAAACTAAT
ATCAATGGCTCCAGTTATCTTACAGTCTACATCTAACTTTTCGCATTCTA
TCAACGTTTAGGTGCTCCACGACACCGTCACACACACAACGAAAAAGCAT
CGGCTAGAAGTTATATCGACATTGATGCATCGGACCCTTTCAAAGTTCCT
AAGAACAGTCATTATATGGAAAATGATATTCCTGAAAATTTCGAAAAAGA
AGAACCAGAATTGAAAGCCAGTGTCTCGGAAGGCGAAGAAAGTCCCGCCC
CTCAAGAACAGGGCGGAGATGAATCTGAACACGAATCAAACGGAGAGCAA
CCGCCAAGTGAACCTCAAGAAGAAGAGGGCGCCGGGCGTGAAGGTCCAGA
CGCCAAAGAAGGTGCGTCAAAAGAATTGCCTCAGGAGCAACCTTCTCAGG
GACAAAATGGAGGAGGTTTGAACGACTTACCGCCAGGGATAACGGAAAAG
ATTGACGAGATAGCAAAGAACCAAGGAAACAGTGACGGAAAACCCATTGA
AATTAATGAAAATGATTTGAAAGGAATGGTGAACAATGCTGGCGGTGCAC
CTCAGGCTGAGGGCGGTCCTCCTGCTGGGGAAGGTGCAGCAGAAGGGGAG
GAAAATTAGATAGAGTGTACTTCTCGACCTGTTTTGAAAAGCAACGCTTT
ATGGATGTATACCTGACAATGGACCATATCGAAAACTTTTATTACGCACA
CCTTTTTCTTCTATTTTGTAATTTTCTTTCGTTTGACAATTTTAAATAGT
TTTGACATTTTCGACAATAATTCGAAGCTAGCAAAGATAAATGTAGGAAT
CAAATAAACCATTAGTCGTTTTGGTGTTTCGGGTCTTATTTGCATTTTTC
TAGGACTTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041762XLOC_041762Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066782-exon-scaffold_46-1575043694:215559..215828TCONS_00066782-exon-scaffold_46-1575043694:215559..215828Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:213807..213875TCONS_00066782-exon-scaffold_46-1575043694:213807..213875Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:213517..213570TCONS_00066782-exon-scaffold_46-1575043694:213517..213570Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:212903..213182TCONS_00066782-exon-scaffold_46-1575043694:212903..213182Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:212229..212367TCONS_00066782-exon-scaffold_46-1575043694:212229..212367Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:211827..211902TCONS_00066782-exon-scaffold_46-1575043694:211827..211902Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:211324..211518TCONS_00066782-exon-scaffold_46-1575043694:211324..211518Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:210607..210837TCONS_00066782-exon-scaffold_46-1575043694:210607..210837Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:209079..209497TCONS_00066782-exon-scaffold_46-1575043694:209079..209497Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:208437..208489TCONS_00066782-exon-scaffold_46-1575043694:208437..208489Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1575043694:207317..208117TCONS_00066782-exon-scaffold_46-1575043694:207317..208117Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:215559..215828TCONS_00066782-exon-scaffold_46-1510915933:215559..215828Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:213807..213875TCONS_00066782-exon-scaffold_46-1510915933:213807..213875Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:213517..213570TCONS_00066782-exon-scaffold_46-1510915933:213517..213570Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:212903..213182TCONS_00066782-exon-scaffold_46-1510915933:212903..213182Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:212229..212367TCONS_00066782-exon-scaffold_46-1510915933:212229..212367Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:211827..211902TCONS_00066782-exon-scaffold_46-1510915933:211827..211902Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:211324..211518TCONS_00066782-exon-scaffold_46-1510915933:211324..211518Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:210607..210837TCONS_00066782-exon-scaffold_46-1510915933:210607..210837Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:209079..209497TCONS_00066782-exon-scaffold_46-1510915933:209079..209497Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:208437..208489TCONS_00066782-exon-scaffold_46-1510915933:208437..208489Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1510915933:207317..208117TCONS_00066782-exon-scaffold_46-1510915933:207317..208117Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:215559..215828TCONS_00066782-exon-scaffold_46-1491911889:215559..215828Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:213807..213875TCONS_00066782-exon-scaffold_46-1491911889:213807..213875Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:213517..213570TCONS_00066782-exon-scaffold_46-1491911889:213517..213570Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:212903..213182TCONS_00066782-exon-scaffold_46-1491911889:212903..213182Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:212229..212367TCONS_00066782-exon-scaffold_46-1491911889:212229..212367Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:211827..211902TCONS_00066782-exon-scaffold_46-1491911889:211827..211902Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:211324..211518TCONS_00066782-exon-scaffold_46-1491911889:211324..211518Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:210607..210837TCONS_00066782-exon-scaffold_46-1491911889:210607..210837Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:209079..209497TCONS_00066782-exon-scaffold_46-1491911889:209079..209497Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:208437..208489TCONS_00066782-exon-scaffold_46-1491911889:208437..208489Clytia hemisphaericaexon
TCONS_00066782-exon-scaffold_46-1491911889:207317..208117TCONS_00066782-exon-scaffold_46-1491911889:207317..208117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:207317..215828 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199093	0.096564	0.0839024	0.0716349	1.23703	1.22896	8.48669	8.99033	5.44882	3.79635	10.3353	11.2664	11.6341	10.0997	9.57584	17.5398	10.5569	10.399	0.249993	0.303224	6.45293	6.50059	8.27631	6.94766	8.98931	8.79381	1.3928	0.605714	0.159501	0.0738634
Blast
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BLAST of TCONS_00066782 vs. Swiss-Prot (Human)
Match: TGT (Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Homo sapiens GN=QTRT1 PE=1 SV=3)

HSP 1 Score: 509.22 bits (1310), Expect = 1.972e-172
Identity = 234/389 (60.15%), Postives = 301/389 (77.38%), Query Frame = 1 
Query:   67 PLHYEVVAKCSKSKGRASLMRLPHFTVETPIFMPVGTQGTMKGLTCDQLRELNCQIILANTYHLGMRPGEDVLNKAGRLHKFMDWDRGMLTDSGGFQMVSLISLSEVTEEGVRFSSPYDGRDILLTPEKSMQIQNAIGADIMMQLDDVVDVKVTGPRVEEAMHRSIRWLDRCIEGHQRKEHQNLFPIIQGGLNLELRTKCIEAMVKRNMPGYAVGGLSGGEAKDDFWKVVHHCTNLLPRDKPIYVMGVGYAIDLVVCSALGADMFDCVYPTRTARFGTALVPSGQLHLKTNQYADDFRPIDDQCTCLTCRKYTRAFIHSLVGKESVAC-YLLSIHNIKYQMNLMTTLRQSIIDDRLEDYIQQFFLKMFPNKDY-PSWCINALDAVNIQL 1227
            P    +VA+CS+S+ RA  + LPH TV TP+FMPVGTQ TMKG+T +QL  L C+I L NTYHLG+RPG +++ KA  LH FM+W   +LTDSGGFQMVSL+SLSEVTEEGVRF SPYDG + LL+PEKS+QIQNA+G+DI+MQLDDVV   VTGPRVEEAM+RSIRWLDRCI  HQR + QNLF IIQGGL+ +LR  C+E M KR++PG+A+GGLSGGE+K  FW++V   T+ LP+DKP Y+MGVGYA DLVVC ALG DMFDCV+PTRTARFG+ALVP+G L L+   +  DF PID +CTC TC+K++RAF+H+L+  ++ A  + L++HNI YQ+ LM+ +R SI++ R  D+++ F   M+ +    P+W  +AL +V I L
Sbjct:   14 PRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCRICLGNTYHLGLRPGPELIQKANGLHGFMNWPHNLLTDSGGFQMVSLVSLSEVTEEGVRFRSPYDGNETLLSPEKSVQIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIRWLDRCIAAHQRPDKQNLFAIIQGGLDADLRATCLEEMTKRDVPGFAIGGLSGGESKSQFWRMVALSTSRLPKDKPRYLMGVGYATDLVVCVALGCDMFDCVFPTRTARFGSALVPTGNLQLRKKVFEKDFGPIDPECTCPTCQKHSRAFLHALLHSDNTAALHHLTVHNIAYQLQLMSAVRTSIVEKRFPDFVRDFMGAMYGDPTLCPTWATDALASVGITL 402
The following BLAST results are available for this feature:
BLAST of TCONS_00066782 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TGT1.972e-17260.15Queuine tRNA-ribosyltransferase catalytic subunit ... [more]
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