TCONS_00066786 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066786
Unique Name	TCONS_00066786
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1540

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_46:210381..215828-

transcript sequence

>TCONS_00066786 ID=TCONS_00066786|Name=TCONS_00066786|organism=Clytia hemisphaerica|type=transcript|length=1540bp
TTAGAAGTCAATTTCAGATATAATAAATCAACATTCCAAGTAAATAAAAA
GATGACATTAGATTGGCCATTGCATTATGAAGTTGTTGCCAAATGCTCTA
AAAGTAAAGGACGAGCCTCACTGATGAGGCTACCTCATTTTACAGTTGAG
ACACCTATCTTTATGCCTGTTGGTACCCAAGGTACAATGAAAGGGTTGAC
CTGTGATCAGTTACGTGAACTTAATTGTCAAATCATCCTGGCCAATACTT
ATCACTTAGGAATGAGACCAGGTGAGGATGTATTGAATAAAGCAGGAAGG
TTACACAAATTCATGGACTGGGACAGGGGAATGCTCACGGACAGTGGAGG
ATTTCAAATGGTTTCTCTCATCTCTCTGTCAGAAGTCACTGAGGAAGGTG
TACGTTTTAGTTCGCCTTACGATGGTCGAGATATTCTTCTTACACCAGAA
AAATCTATGCAGATACAGAATGCTATTGGAGCTGATATCATGATGCAATT
AGATGACGTAGTCGATGTCAAAGTTACGGGACCGAGAGTAGAAGAAGCAA
TGCATCGCTCCATTCGATGGCTCGATCGGTGCATTGAAGGTCATCAACGG
AAAGAACATCAGAATTTATTCCCTATCATTCAAGGTGGATTGAATTTGGA
ACTGAGGACAAAATGTATCGAAGCCATGGTCAAACGCAACATGCCAGGTT
ACGCAGTTGGTGGTTTGAGCGGTGGTGAGGCCAAGGATGACTTTTGGAAA
GTCGTTCATCATTGCACTAATCTTTTACCGAGAGATAAACCTATCTATGT
TATGGGAGTTGGgtATGCGATAGATTTGGTTGTATGTTCTGCGTTAGGAG
CTGATATGTTTGATTGTGTCTACCCCACGCGTACTGCAagGTTCGGTACA
GCATTGGTGCCATCTGGTCAGCTGCATCTCAAAACAAACCAATATGCTGA
CGATTTCAGGCCCATTGACGACCAATGTACTTGTTTAACGTGTCGCAAAT
ATACAAGAGCTTTTATCCATAGTTTGGTTGGCAAGGAATCAGTTGCTTGT
TACCTTTTATCCATCCATAATATCAAGTATCAGATGAACCTTATGACCAC
GTTACGTCAAAGTATAATCGACGATCGATTGGAAGATTATATACAACAAT
TCTTCTTGAAAATGTTCCCTAATAAAGACTATCCTTCGTGGTGCATAAAC
GCTCTTGATGCTGTCAATATACAACTTGTCACGTGATACTTACATAAGAA
TGAATAGTATGGTGGGATGGTTTTATAGGTGGATGGATGAGCAGGTTTTA
TTTATTTGTCTCACATTTTTATACTTTATTGGCTACAAGAGTTAtatgtt
ttcaaaataatggTATCTTTGAAATTAAGCTTtcgttttttatgtttttt
tattgtcACTAGTCTAACTGACCAAAGGCAGTCACGACGTATCAAGTACG
ACTTTAGGAAGACCGCTTAAGcctttttaaccctattagccccagggggg
gggggtagaatctaccacgctggagttcttttgtttatat

Run BLAST on NCBI

transcript from alignment at scaffold_46:210381..215828-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066786 ID=TCONS_00066786|Name=TCONS_00066786|organism=Clytia hemisphaerica|type=transcript|length=5448bp|location=Sequence derived from alignment at scaffold_46:210381..215828- (Clytia hemisphaerica)
TTAGAAGTCAATTTCAGATATAATAAATCAACATTCCAAGTAAATAAAAA
GATGACATTAGATTGGCCATTGCATTATGAAGTTGTTGCCAAATGCTCTA
AAAGTAAAGGACGAGCCTCACTGATGAGGCTACCTCATTTTACAGTTGAG
ACACCTATCTTTATGCCTGTTGGTACCCAAGGTACAATGAAAGGGTTGAC
CTGTGATCAGTTACGTGAACTTAATTGTCAAATCATCCTGGCCAATACTT
ATCACTTAGGAATGAGACCAGTAAGTATATTTGTGATATGCAGCATTGCA
ATATCTTCCACGGACCCAACAGCTGATTGGTTCGTGCAAGTGACGTATTG
ACTGATTTTACGTCATTTACAACAAATCAGCTGCTGGGTCATGTAGACAT
TGCAATGGCGCATATCATGAATTTGTGCATTTATTTTGTATTTTTCGCTT
TATTTGATTATGTTTGAAAAGTGTTTTTATGCTTATTAAAATGTTTTGTA
ACTATTATTTTAGCTCTTTTTAAAGATTTTATTTTTACATAAGTGTTCCC
GTTTCATATCAGAAACATAAGGACAGTGTGTCTGGCCTTTTGTTATATTG
TGCTGATATAAACAAAAAATGTTTTTCTTGCCCTCTTTTTGATCAATCTT
GATTCACATCCGTGTCAATCCAATGTGAAAAAGCAAACGATATCACTCTT
ATTTAAAATAAAACCTTTCAATTTCAATTAAAATCGTCAATCTTAGAAAC
TGAAATGTAATGTTGCTTGGGCGGTGATGATTGTTGCTCCCATGAACGTA
CTTGTGAGAGCATTTCGCTAGCCCACGCTTGTTCGAGTAATGTTGCCGTT
ACGCCACGGCTCACATGGTATCCTTGTAATGTACCGTGTCTGACCTGAAA
TATATTTCATTTATAATATGACAGTCTCTTTTTAACGTAAATTGCGAATT
AATTCTTTAGAAATAATAATAATGGGCTTTTCCAGAAAATATTAGAATTT
GGAAGGGGCGTGGAGTAACTTAAACCGCCGGACAAGGCAAATTTTGTAGA
TTTTTCACTACCCCCTGGACACTATAGCCTCCCCCCTCGTGTACGAACAT
TTTTTGGAAGAGCCTAATATAATAATGAATCACAAAACTCGAGATCTATC
ATTTTGATGCAGCAGGACAATAATCCGAAAATATTTCTGTGAATATCGTT
TGTTGAACAACGCAAAAAAAATCGTCTGATTTAAAAGGCCAACTCATTTA
TTTTATCTATCCCTACAATTCTCTAGGGTGAGGATGTATTGAATAAAGCA
GGAAGGTTACACAAATTCATGGACTGGGACAGGGGAATGCTCACGGTACG
TTTTCATATTGAATTGTTTAAATATTTGTAGCATTTCAGATCTTAATAAT
TTTCTACTTTATCCTCAATGTGTATGCTTTGACAACCTTTGATGTTTCTT
GAGATAATAAGCCTTTTTATACGTTTCCATCCATATTGACATTGAATGAA
TTAATGAAAGCCTTCTCTTTCTACTGAAATATAAATTGTTGCTTTTAACC
TATTGTAAATAACCTGACTTCCTTCTCTTAGGACAGTGGAGGATTTCAAA
TGGTTTCTCTCATCTCTCTGTCAGAAGTCACTGAGGTTTGCTACTAATTT
GTTAAACCATATGAAAGCCTTGGAAACTATTGTTAAAGATTATTACACGA
AACCTTTTTATTTGTTAATCTTTGGCAACTATTGCTAAAGGTCACTGCAC
GAAGCCTAATTTTATTTGTTAGAAAATATCTTTGTCCGAATCGGTCAAAA
GGATTTCTTCATTTTTGTGTACTCTTTGAATCGTCCATAAATACCTAGTA
TCTATGCATGCCTTACTGATCCCAATCTTTCNAACAACGCAAAAAAAATC
GTCTGATTTAAAAGGCCAACTCATTTATTTTATCTATCCCTACAATTCTC
TAGGGTGAGGATGTATTGAATAAAGCAGGAAGGTTACACAAATTCATGGA
CTGGGACAGGGGAATGCTCACGGTACGTTTTCATATTGAATTGTTTAAAT
ATTTGTAGCATTTCAGATCTTAATAATTTTCTACTTTATCCTCAATGTGT
ATGCTTTGACAACCTTTGATGTTTCTTGAGATAATAAGCCTTTTTATACG
TTTCCATCCATATTGACATTGAATGAATTAATGAAAGCCTTCTCTTTCTA
CTGAAATATAAATTGTTGCTTTTAACCTATTGTAAATAACCTGACTTCCT
TCTCTTAGGACAGTGGAGGATTTCAAATGGTTTCTCTCATCTCTCTGTCA
GAAGTCACTGAGGTTTGCTACTAATTTGTTAAACCATATGAAAGCCTTGG
AAACTATTGTTAAAGATTATTACACGAAACCTTTTTATTTGTTAATCTTT
GGCAACTATTGCTAAAGGTCACTGCACGAAGCCTAATTTTATTTGTTAGA
AAATATCTTTGTCCGAATCGGTCAAAAGGATTTCTTCATTTTTGTGTACT
CTTTGAATCGTCCATAAATACCTAGTATCTATGCATGCCTTACTGATCCC
AATCTTTCCAAACTGCAATACAATATATCCATTCATTTGCCGCAAATAAT
GTTTTTTATTGGCCTATTTTTTACTTATTTGCCTTTCACCTTTCAGGAAG
GTGTACGTTTTAGTTCGCCTTACGATGGTCGAGATATTCTTCTTACACCA
GAAAAATCTATGCAGATACAGAATGCTATTGGAGCTGATATCATGATGCA
ATTAGATGACGTAGTCGATGTCAAAGTTACGGGACCGAGAGTAGAAGAAG
CAATGCATCGCTCCATTCGATGGCTCGATCGGTGCATTGAAGGTCATCAA
CGGAAAGAACATCAGAATTTATTCCCTATCATTCAAGGTGGATTGAATTT
GGAACTGAGGACAAAATGTATCGAAGGTACTTGTTATTCTTGAAAAAATT
TCTTGCTGGGCCAGATAAATTTGATAAAAAAGTGAAAACTAAAAATTTAA
TTTTATTCATTGTTTGAAGTTTCGGTGTCTTCTTTGCACCATGATCATAA
GTATAGTAAATACTTGTTATTCGTTAGGAAAAGGAGCCAAGTGGGATGAG
TAATAAGCAAAAACCCTTTGTGCGCGCTGTTTTTTTTAAAAAAGTTGAAA
TTTTTCTAATTTTTTTTTTTAAAACTCAAAACATTAAAGTGCCATAAAAG
CTTGTAGCTTTTGATTTAGAAGATGGTTTTGTTACATTGATAAGCTATTT
TTATACTCCTTCTAAAAGCATTCGGCTTATGCCCCTTTAAATCAAGTTGA
TATTGATTAGCCTCGAGCTAACTAAGTACACATTGTACTACTTTGCATCA
ACTTTAAAGAAAAGAAACATAAACATAAACATAAACACCTTTTAAAAAAT
GCAGGGACGTTTCTACCATGGTTATCCTTATAACTTAGCATTTTTACGTT
TTGAATTATAGCCATGGTCAAACGCAACATGCCAGGTTACGCAGTTGGTG
GTTTGAGCGGTGGTGAGGCCAAGGATGACTTTTGGAAAGTCGTTCATCAT
TGCACTAATCTTTTACCGAGAGATAAACCTATCTATGTTATGGGAGTTGG
GTGAGTAAAAGTTTTCATTTCGAGATCTCATTTTTTAATTATATTTCACC
TCGTCTACTGTTCCACTGTTCTCATTTATTAAATTCCCGTAAACACTCAA
AATATGATATATCGAAAAGTGTCAACGATAAGGCTTTGCAACAGATTGAA
GTCTCGCTAATGGTTTGTTCTCGCAACTTCAGTTAAGCTAGTGCGAATGT
CTGTCTGTCAGTCTGTCCAAAAAATCTGGGACGAAAAATATTGTTTAGCC
TGCCAGTGCGGTGCCCTTGTCCCTGTTGTCAATTTATAAAGTAAAGGTAA
AGGTTTTGAAATTTATTTTTGTTTAGGTATGCGATAGATTTGGTTGTATG
TTCTGCGTTAGGAGCTGATATGTTTGATTGTGTCTACCCCACGCGTACTG
CAGTAAGAAATAGTTTATCAAATATTTTTTCATATTATTTCTCCGTTAAA
AACTTCATCCGTTGTGCTTTTCAAAGGTTAAAGAAAGTCTTTCGAAAGAT
GGCACTCAAATTTTCAATTTTGTCTAAATCCAAAGATTGACCAATTTTTC
TTGACTGATCGGTTGATACTTCTAGACTCCTGAATGCCTGATAATCTTGA
AATCCTCATATAAAAGCTTTTCAATAAACGCCCAATGTTAACAAATACAT
TCAATCGAACGAAACTTAAACATTTTTAAATGTAATTTTTTGATTAAAAT
TTCTTTTCAGAGGTTCGGTACAGCATTGGTGCCATCTGGTCAGCTGCATC
TCAAAACAAACCAATATGCTGACGATTTCAGGCCCATTGACGACCAATGT
ACTTGTTTAACGTGTCGCAAATATACAAGAGCTTTTATCCATAGTTTGGT
TGGCAAGGAATCAGTTGCTTGTTACCTTTTATCCATCCATAATATCAAGT
ATCAGGTCAGGATTTTCAATATAAATTATCCAGTTTGATGGTTTTATTTA
TTGAATAATTCCACCCATAAGTCCACACAACAATCAAATCAATCTGATTG
GTTGAATCTGAAAAGTATGATGTAATTGAGTCAAATAAACCAATCAGTTG
AGCGGACTGTGGGATAGTTAGCCGTAAGTACGGTGATGATGCCAGTGAGT
GGTCTTTTCAAATGTTACTTTGAACGAAGAAATTTCCTTTTCTTGTGCTA
TGACCAAATTTTATCACTAAAAAGATGAGACTTCAGTGCTTGCTTTCGAG
TGTTCAACTCTGTTTTAGATAAACCAATTAGCGGGGACTCGATATCTGAC
AGCTAAGGTGACGNGTGTTCAACTCTGTTTTAGGTAAACCAATTAGGGGG
GACTCGATTTCTGACAGCTAAGGTGACATTTTTAAACAGCTTGGAGCTTG
GATCATCACTCACTATTTTATTCCCACAATTTTGCTTTCAGATGAACCTT
ATGACCACGTTACGTCAAAGTATAATCGACGATCGATTGGAAGATTATAT
ACAACAATTCTTCTTGAAAATGTTCCCTAATAAAGACTATCCTTCGTGGT
GCATAAACGCTCTTGATGCTGTCAATATACAACTTGTCACGTGATACTTA
CATAAGAATGAATAGTATGGTGGGATGGTTTTATAGGTGGATGGATGAGC
AGGTTTTATTTATTTGTCTCACATTTTTATACTTTATTGGCTACAAGAGT
TATATGTTTTCAAAATAATGGTATCTTTGAAATTAAGCTTTCGTTTTTTA
TGTTTTTTTATTGTCACTAGTCTAACTGACCAAAGGCAGTCACGACGTAT
CAAGTACGACTTTAGGAAGACCGCTTAAGCCTTTTTAACCCTATTAGCCC
CAGGGGGGGGGGGTAGAATCTACCACGCTGGAGTTCTTTTGTTTATAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041762	XLOC_041762	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:210381..215828 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6405	11.9119	3.91966	2.92521	1.48446	1.32823	0.418496	0.371218	0.904317	1.52968	0.309843	0.197655	0.150503	0.169863	0.413803	0.179935	0.321917	0.523503	4.02048	3.24324	0.90149	0.943744	3.33144	3.8412	0.265217	0.152763	4.11337	5.43382	6.90417	7.43226

Blast

[Close]

BLAST of TCONS_00066786 vs. Swiss-Prot (Human)
Match: TGT (Queuine tRNA-ribosyltransferase catalytic subunit 1 OS=Homo sapiens GN=QTRT1 PE=1 SV=3)

HSP 1 Score: 509.22 bits (1310), Expect = 2.487e-177
Identity = 234/389 (60.15%), Postives = 301/389 (77.38%), Query Frame = 1

Query:   67 PLHYEVVAKCSKSKGRASLMRLPHFTVETPIFMPVGTQGTMKGLTCDQLRELNCQIILANTYHLGMRPGEDVLNKAGRLHKFMDWDRGMLTDSGGFQMVSLISLSEVTEEGVRFSSPYDGRDILLTPEKSMQIQNAIGADIMMQLDDVVDVKVTGPRVEEAMHRSIRWLDRCIEGHQRKEHQNLFPIIQGGLNLELRTKCIEAMVKRNMPGYAVGGLSGGEAKDDFWKVVHHCTNLLPRDKPIYVMGVGYAIDLVVCSALGADMFDCVYPTRTARFGTALVPSGQLHLKTNQYADDFRPIDDQCTCLTCRKYTRAFIHSLVGKESVAC-YLLSIHNIKYQMNLMTTLRQSIIDDRLEDYIQQFFLKMFPNKDY-PSWCINALDAVNIQL 1227
            P    +VA+CS+S+ RA  + LPH TV TP+FMPVGTQ TMKG+T +QL  L C+I L NTYHLG+RPG +++ KA  LH FM+W   +LTDSGGFQMVSL+SLSEVTEEGVRF SPYDG + LL+PEKS+QIQNA+G+DI+MQLDDVV   VTGPRVEEAM+RSIRWLDRCI  HQR + QNLF IIQGGL+ +LR  C+E M KR++PG+A+GGLSGGE+K  FW++V   T+ LP+DKP Y+MGVGYA DLVVC ALG DMFDCV+PTRTARFG+ALVP+G L L+   +  DF PID +CTC TC+K++RAF+H+L+  ++ A  + L++HNI YQ+ LM+ +R SI++ R  D+++ F   M+ +    P+W  +AL +V I L
Sbjct:   14 PRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTEQLDALGCRICLGNTYHLGLRPGPELIQKANGLHGFMNWPHNLLTDSGGFQMVSLVSLSEVTEEGVRFRSPYDGNETLLSPEKSVQIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIRWLDRCIAAHQRPDKQNLFAIIQGGLDADLRATCLEEMTKRDVPGFAIGGLSGGESKSQFWRMVALSTSRLPKDKPRYLMGVGYATDLVVCVALGCDMFDCVFPTRTARFGSALVPTGNLQLRKKVFEKDFGPIDPECTCPTCQKHSRAFLHALLHSDNTAALHHLTVHNIAYQLQLMSAVRTSIVEKRFPDFVRDFMGAMYGDPTLCPTWATDALASVGITL 402

The following BLAST results are available for this feature:

BLAST of TCONS_00066786 vs. Swiss-Prot (Human)

BLAST of TCONS_00066786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TGT	2.487e-177	60.15	Queuine tRNA-ribosyltransferase catalytic subunit ...	[more]

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TCONS_00066786 (transcript) - C. hemisphaerica