TCONS_00066789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066789
Unique NameTCONS_00066789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066789 ID=TCONS_00066789|Name=TCONS_00066789|organism=Clytia hemisphaerica|type=transcript|length=600bp
TTTCAGACTTCTGTTATTAAATTGACAAAACATGTGGAAATATTTCACAT
TGACTCTTTTGATCGTCCCATTGGTATTCTCGTACCATATTCAAGATCGG
CATGATAACTATAGACTGAACAGAGGAAAGGGTGATAGTTACAGAAACAC
ACTCAGAGAAGATTTCTTCGAGAAAAGATCAGCTTGTGTGGATGATGACC
CTGCTGACTGGTGTGTAGATATAGTATCTCATGACAATGGATGTAAAAAA
TATCCCAAATTTGCAAAAGATTGCAAAAAGACTTGTGACCTTTGCTaaaa
tggacaaaaaggaAAGAACGGATCGTTGTTCAAGAGAAGGAAAAGTCATT
CTCATCTCTCAGAAAGCCAGAAAGCGGaaattataataatatttttctaC
ACTTTTTTACTATTTCAACTTTTAGATTTTTAGCATTTATACTTGTGAAA
TATAATTTGTACTCGTAATAAGCTTcctttcttttaaaactttgtatGAC
TTGTTACTTCTGAAACAGTTTGAAGGTATTTAAATTGTGATTCTTGACTC
GTTGAAAAGATTATCGTGAGCGAGCATTCATCatgtaaaatattgaaata
Run BLAST on NCBI

transcript from alignment at scaffold_46:249238..251378-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066789 ID=TCONS_00066789|Name=TCONS_00066789|organism=Clytia hemisphaerica|type=transcript|length=2141bp|location=Sequence derived from alignment at scaffold_46:249238..251378- (Clytia hemisphaerica)
TTTCAGACTTCTGTTATTAAATTGACAAAACATGTGGAAATATTTCACAT
TGACTCTTTTGATCGTCCCATTGGTATTCTCGTACCATATTCAAGATCGG
CATGATAACTATAGACTGAACAGAGGAAAGGGTGATAGTTACAGAAACAC
ACTCAGAGAAGATTTCTTCGAGAAAAGATCAGGTACGCGTTTTTTTATAA
GAACATTCCAAAATTTTGAAGCCTTCGTATGTTCTAGACTTTTTGAGTTT
AAAGTCTAAAAATGTTTTTAATATGTTCTTATTTCCACCACTCTGGTCTG
TTCCTTTTATGAAAGTTAAAAAAGACTTTTTCTCTCATTTGAAAATTGAA
AAAAAGTGTTCGCAATTACCCGTCGGTCGCAATTAGCCGACATGACTCTA
TCTTTGTTCATTGAGAAACAAAATTTGAAAAAAAATAAATATTTTCCCCC
ACAGTAACGAAAAAACGAAGAAAACAAAAGGAAATGCTCGGGTTACATTG
TTTATTGTGTGTATGCTCAACATTTGATTTTGGTGCGATTGTTTTCCTTT
AGTCAATCACCACGCTCAAAGGACATTTGATATTCATCAAAAATCAAAAA
TAGATTAAAATGGTACCTCGCACCGGGCAGATTCTCTTACGGAGCAATGA
CCTTTAGAGTGCCCCCCCCCCCCCCCCTTTTTTTGGGAAGCAAGACCGTT
TGACGGGCCCCCCCCCCCCCCCCTTTTTTTGGGAAGCAAGACCGTTTGAC
GGGCCCCCCCCCCCCCCCCTTTTTTTGGGAAGCAAGACCGTTTGACGGGC
CCCCCCCCCCCCCCCACTGCTAACACGGAGTAATCAAAATCTGCTCGGAG
ATAATATATTATACTAATTTTCCCTTTTACAGCTTGTGTGGATGATGACC
CTGCTGACTGGTGTGTAGATATAGTATCTCATGACAATGGATGTAAAAAA
TATCCCAAATTTGCAAAAGATTGCAAAAAGACTTGTGACCTTTGCTGTAA
GTATGAATAACAGTATGCAAGACCTTTATTGCTCAATCAGATCTTATAAC
GACAGTTCTGTTGCCGAATGAATGTCGACGCTATTTTGGATAAAAAAATA
AATACCAGAATTTTTCAAAACGCTTTCATTATACTTTTGATTATTCTCCT
TGGAAATATCTTTTCAATGGTGTATTACTTTCTAACAGGGGGTACTGCTG
CCAGCGATGAGTCAGTTGATTTTAAAGTCGCTATTCACGATAAGTGTGCA
CTAAATTTTGCTTTGCTTGTTATTTCTCAACCAATGCTTCAATCTTAAAA
ATTTTGGTATCGTTGGGAAAGTAGGAAAGCGCTTATTAATTTACTGTTCA
TTTTTTCCGTGAAATTTGAAAAGAACATGAAGACACAGTAACGAAAAAAC
GATGAAAACAAAAGCAAAAACCTCGTGTTCCAATGTTTATTATGTATACA
CGTATACAACATTTGATTTTGGTGCGATTGTTTTTGAAATCGCCTAGCTT
TAAGCTTTCCAAAGATGTAAAAATAACGTTTATTTCTTCATTTTTCTTTA
GCTCATTTCAAATTTCACGGAAAAATCTAACAGTAAATTAATAAGCTCCT
TCCTACCTCCCCAACGATACCAAACTTTTTAAGATTGAAGCATTGGTTGA
GAAATAACAAGCAAAGCCAAATTTAGTGCACACATATCGTGAATAGACTT
TTAAATGAAAATGCTTTGAGTTGTAGGTGCTTCTCTAACTTTTCGAAAAA
TTTCTACTCTCAAACTCTCAAAGTTTAATACCTTTTTCTCGCTATTTATC
ATTTAGCTATGGACAATATTTTTCTACATTATTTTAGAAAATGGACAAAA
AGGAAAGAACGGATCGTTGTTCAAGAGAAGGAAAAGTCATTCTCATCTCT
CAGAAAGCCAGAAAGCGGAAATTATAATAATATTTTTCTACACTTTTTTA
CTATTTCAACTTTTAGATTTTTAGCATTTATACTTGTGAAATATAATTTG
TACTCGTAATAAGCTTCCTTTCTTTTAAAACTTTGTATGACTTGTTACTT
CTGAAACAGTTTGAAGGTATTTAAATTGTGATTCTTGACTCGTTGAAAAG
ATTATCGTGAGCGAGCATTCATCATGTAAAATATTGAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041764XLOC_041764Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066789-exon-scaffold_46-1575043694:251197..251378TCONS_00066789-exon-scaffold_46-1575043694:251197..251378Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1575043694:250383..250496TCONS_00066789-exon-scaffold_46-1575043694:250383..250496Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1575043694:249238..249541TCONS_00066789-exon-scaffold_46-1575043694:249238..249541Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1510915933:251197..251378TCONS_00066789-exon-scaffold_46-1510915933:251197..251378Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1510915933:250383..250496TCONS_00066789-exon-scaffold_46-1510915933:250383..250496Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1510915933:249238..249541TCONS_00066789-exon-scaffold_46-1510915933:249238..249541Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1491911889:251197..251378TCONS_00066789-exon-scaffold_46-1491911889:251197..251378Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1491911889:250383..250496TCONS_00066789-exon-scaffold_46-1491911889:250383..250496Clytia hemisphaericaexon
TCONS_00066789-exon-scaffold_46-1491911889:249238..249541TCONS_00066789-exon-scaffold_46-1491911889:249238..249541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:249238..251378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.2703	1.76964	2.36292	2.61329	3.18142	1.64377	2.33311	3.16713	3.82307	1.8942	1.19506	2.59847	1.14657	0.376017	1.08198	1.54817	2.2478	2.51337	1.061	0.80746	5.00053	3.85119	162.4	165.616	248.224	136.329	8.58477	3.45231	2.51774	1.53911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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