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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066792 ID=TCONS_00066792|Name=TCONS_00066792|organism=Clytia hemisphaerica|type=transcript|length=1590bp
AACCCAGGTACAAAAGATTGAAAGAGCTAATATTTGGGTTCTACATTATT
CGACTGTCACATAGTATAAATAAATCATTTAAAATGTCTGAACAGTTATT
TCAAGAAGCATCTACAGCTTTTCAAGAATGGTGTAAAAGAAATAGTGTTC
CAGTTCTCTCGTTGGATCCTACAAGTACTGAAAAAGATGATCTCAAATCA
ATAGTACAATCCATTGGAAATGCACGGTTTGTAGCCATCAGTGAAGGGTT
TCATAATTGTAAGGAGATGATGAGTTTACACCATAGGATCATTCGCCACC
TGGTTGAAGAATGTGGATTCAACATTGTGTTGAGTGAAAGTGGGTTCCCC
GAGTCCCTTTATATCAATGATTATATTCGAGGGAAATCAATACCAGAGGA
GATTGATGTATGGAAAAATGGTTTAAACAAAATGTACAGTGCCTGGAGAG
AGGGACAAGCTCTGATTGAATACCTCAAGAAGAATAATAAAGATTATGGT
AATTCTTTAGAGTATTATGGTGTAGATATTGGAGGATTTTATCAAGACTG
GGTCACTCCtttcaatataattttcaaatacaTCAAGACTGTTGATGAAG
ACTATTGTAAAGATCTAGAGTCAAAATTATTGCCATATCTCAACCAAATG
TCCACAAATGCACGAAAAAACTAtgctgaaaattttgatttgcaCCAAAA
AGCTTTACTATCTGCTATATTGGACGAAGCTGTAAGTTACTTTGGCTCCA
AAGCTGATGAGTATGTATCCAGAAGCAGTAAAGAAGATTATGAAAAGATT
CGACAGTCATTGACTTCAATGCAGTTGGCAGAAAACTATTATCGAAATTA
TGATACTGTTTCTAAGAAGTATGTAGGTTTGAATGGAAGAGAGATTGCAA
TGGCCCAGAATTGCTTGTGGGTCTTAAACAAAAGAAGTGATGCCAAAGTT
GTTTGGATAGATCACGTGATTCATACCAAAACAAAAAGCCAACTTCAGGA
TGGTGTATGGGGAAACTTCACACCAGCAGGTCAACTAATAAAGCAAGCTT
TAGGAAAGGATTACTACGGTATTGGTATGGTGTATGGATCTGGCCAATTT
TGGAATAAATGGCAACGTCCTGCTGAAAGGTTCATTGACAAAATCCCTGA
ATGGGATGAAAAAAGGGTCAGTTTTGAGAGTGAAATTACTAAATCCCTAC
CTGGAAACGGGaactatttcattgatttttctgcAGCACCAAAGAATTTT
AAACTGCAATATTTTATGTCAACACCGTTATCTCTACGGGAAAACGATTA
TTATATGCAAATCGAACCGCAGGAATGGGATGGTTGCATCTATCTTCAAA
TTGCATCGCCTGCAACCCCAATTTAGTGACTAACAAATGAGTCTTCTTGA
AGTAAACCACAATTTTTCatattataaattttttgtatcatatttgCTTT
TTACTCTTTGCAACATTTATtatcatatttctcaaaatgtCTTAGGTATT
TATTGgctgatttcaaaatttatttgtccagggggggggggggtcatgca
gttactaTGTGAACACTATGACACTTAGTACGTGGTGGTG Run BLAST on NCBI transcript from alignment at scaffold_46:262176..264046- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066792 ID=TCONS_00066792|Name=TCONS_00066792|organism=Clytia hemisphaerica|type=transcript|length=1871bp|location=Sequence derived from alignment at scaffold_46:262176..264046- (Clytia hemisphaerica)
AACCCAGGTACAAAAGATTGAAAGAGCTAATATTTGGGTTCTACATTATT
CGACTGTCACATAGTATAAATAAATCATTTAAAATGTCTGAACAGTTATT
TCAAGAAGCATCTACAGCTTTTCAAGAATGGTGTAAAAGAAATAGTGTTC
CAGTTCTCTCGTTGGATCCTACAAGTACTGAAAAAGATGATCTCAAATCA
ATAGTACAATCCATTGGAAATGCACGGTTTGTAGCCATCAGTGAAGGGTT
TCATAATTGTAAGGAGATGATGAGTTTACACCATAGGATCATTCGCCACC
TGGTTGAAGAATGTGGATTCAACATTGTGTTGAGTGAAAGTGGGTTCCCC
GAGTCCCTTTATATCAATGATTATATTCGAGGGAAATCAATACCAGAGGA
GATTGATGTATGGAAAAATGGTTTAAACAAAATGTACAGTGCCTGGAGAG
AGGGACAAGCTCTGATTGAATACCTCAAGAAGAATAATAAAGATTATGGT
AATTCTTTAGAGTATTATGGTGTAGATATTGGAGGATTTTATCAAGACTG
GGTCACTCCTTTCAATATAATTTTCAAATACATCAAGACTGTTGATGAAG
ACTATTGTAAAGATCTAGAGTCAAAATTATTGCCATATCTCAACCAAATG
TCCACAAATGCACGAAAAAACTATGCTGAAAATTTTGATTTGCACCAAAA
AGCTTTACTATCTGCTATATTGGACGAAGCTGTAAGTTACTTTGGCTCCA
AAGCTGATGAGTATGTATCCAGAAGCAGTAAAGAAGATTATGAAAAGATT
CGACAGTCATTGACTTCAATGCAGTTGGCAGAAAACTATTATCGAAATTA
TGATACTGTTTCTAAGAAGTATGTAGGTTTGAATGGAAGAGAGATTGCAA
TGGCCCAGAATTGCTTGTGGGTCTTAAACAAAAGAAGTGATGCCAAAGTT
GTTTGGATAGATCACGTGATTCATACCAAAACAAAAAGCCAACTTCAGGA
TGGTGTATGGGGAAACTTCACACCAGCAGGTCAACTAATAAAGCAAGCTT
TAGGAAAGGTACAGTTTGCATATTGTCTTTGTGTCTTTTTTGTCAAATTT
AAGTGTTGTTTGGTGTTTCAGTATCTAACATTCCCATTAACTGTTCCAAC
CTTAATTATTTTGAATAATTGCTACCTTTTATGTAGCAAACCAGAGCAAA
CTGTAAAGCAAAAAGCAAATTGTTTTCTTAAAATTGTATCGCTCTTGAAG
CATCGCTTAACCTTCAATACATATCTTTTATGTTATGTGAATATATCTGT
GAATTAGCAAATGATTTTATATGCTCCTCTCTCCTGCAGGATTACTACGG
TATTGGTATGGTGTATGGATCTGGCCAATTTTGGAATAAATGGCAACGTC
CTGCTGAAAGGTTCATTGACAAAATCCCTGAATGGGATGAAAAAAGGGTC
AGTTTTGAGAGTGAAATTACTAAATCCCTACCTGGAAACGGGAACTATTT
CATTGATTTTTCTGCAGCACCAAAGAATTTTAAACTGCAATATTTTATGT
CAACACCGTTATCTCTACGGGAAAACGATTATTATATGCAAATCGAACCG
CAGGAATGGGATGGTTGCATCTATCTTCAAATTGCATCGCCTGCAACCCC
AATTTAGTGACTAACAAATGAGTCTTCTTGAAGTAAACCACAATTTTTCA
TATTATAAATTTTTTGTATCATATTTGCTTTTTACTCTTTGCAACATTTA
TTATCATATTTCTCAAAATGTCTTAGGTATTTATTGGCTGATTTCAAAAT
TTATTTGTCCAGGGGGGGGGGGGGTCATGCAGTTACTATGTGAACACTAT
GACACTTAGTACGTGGTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066792-exon-scaffold_46-1575043694:262989..264046 | TCONS_00066792-exon-scaffold_46-1575043694:262989..264046 | Clytia hemisphaerica | exon |
| TCONS_00066792-exon-scaffold_46-1575043694:262176..262707 | TCONS_00066792-exon-scaffold_46-1575043694:262176..262707 | Clytia hemisphaerica | exon |
| TCONS_00066792-exon-scaffold_46-1510915933:262989..264046 | TCONS_00066792-exon-scaffold_46-1510915933:262989..264046 | Clytia hemisphaerica | exon |
| TCONS_00066792-exon-scaffold_46-1510915933:262176..262707 | TCONS_00066792-exon-scaffold_46-1510915933:262176..262707 | Clytia hemisphaerica | exon |
| TCONS_00066792-exon-scaffold_46-1491911889:262989..264046 | TCONS_00066792-exon-scaffold_46-1491911889:262989..264046 | Clytia hemisphaerica | exon |
| TCONS_00066792-exon-scaffold_46-1491911889:262176..262707 | TCONS_00066792-exon-scaffold_46-1491911889:262176..262707 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:262176..264046 - |
Blast
The following BLAST results are available for this feature:
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