TCONS_00066798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066798
Unique NameTCONS_00066798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066798 ID=TCONS_00066798|Name=TCONS_00066798|organism=Clytia hemisphaerica|type=transcript|length=704bp
ccaaatttgacatccttctttagagataatCTGAGATAATAGGAATAGTA
GGAAGGTCGGAATTACTGATGGACAGCTTGGTAAAATACGTGTGTTTTCA
TCATGAGAAATACCTCGCAAGTTATCAACGACGCAaacaattaacaaaag
aaaaaaacgaaagaTCAAAGAGATTTTCTTTAACCAAGATTTAAGATGCC
TTCGCCAATCTTGGGAATCtccatttttttataagttaTTTGCGCTTTTC
GTGACGATTACTCTCATATAAATCTTATCACCACCAGGATTGGCGAAGTT
TGTGAAGTTGAAGCACCTGAAGAATTGACTTTTTCAATCATCTGCTGTGG
AGCTCAAGTTATCTGAAATTGGAATCGTCTAAAAGACACGATGTGCAATG
AATTGTAACAAACAGTGATTGTTGATTTGAAAGACGTTAAAGATGCGAAG
TAATTATCTTGGGAGTAAATGAActgaaaatcaattaaaacaatgtaaca
aaaaagTTACAGAATTATGTCCATTATGTAAAGAAATGTGAAATATTTAG
CTTAAAAAGTCACTCACACATTAAATGTGATGTGCCGTTTTTAGTTCTCC
TCTGGGAAAACAAAACCTGCTATGCCGGTTACGATTGATTCGTTTTTTAT
ACTACGATGTTCTCTACCGTTTTGACTTTTTCAGCGCCACAACTATGTGT
AAGT
Run BLAST on NCBI

transcript from alignment at scaffold_46:295644..296347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066798 ID=TCONS_00066798|Name=TCONS_00066798|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at scaffold_46:295644..296347- (Clytia hemisphaerica)
CCAAATTTGACATCCTTCTTTAGAGATAATCTGAGATAATAGGAATAGTA
GGAAGGTCGGAATTACTGATGGACAGCTTGGTAAAATACGTGTGTTTTCA
TCATGAGAAATACCTCGCAAGTTATCAACGACGCAAACAATTAACAAAAG
AAAAAAACGAAAGATCAAAGAGATTTTCTTTAACCAAGATTTAAGATGCC
TTCGCCAATCTTGGGAATCTCCATTTTTTTATAAGTTATTTGCGCTTTTC
GTGACGATTACTCTCATATAAATCTTATCACCACCAGGATTGGCGAAGTT
TGTGAAGTTGAAGCACCTGAAGAATTGACTTTTTCAATCATCTGCTGTGG
AGCTCAAGTTATCTGAAATTGGAATCGTCTAAAAGACACGATGTGCAATG
AATTGTAACAAACAGTGATTGTTGATTTGAAAGACGTTAAAGATGCGAAG
TAATTATCTTGGGAGTAAATGAACTGAAAATCAATTAAAACAATGTAACA
AAAAAGTTACAGAATTATGTCCATTATGTAAAGAAATGTGAAATATTTAG
CTTAAAAAGTCACTCACACATTAAATGTGATGTGCCGTTTTTAGTTCTCC
TCTGGGAAAACAAAACCTGCTATGCCGGTTACGATTGATTCGTTTTTTAT
ACTACGATGTTCTCTACCGTTTTGACTTTTTCAGCGCCACAACTATGTGT
AAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041767XLOC_041767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066798-exon-scaffold_46-1575043694:295644..296347TCONS_00066798-exon-scaffold_46-1575043694:295644..296347Clytia hemisphaericaexon
TCONS_00066798-exon-scaffold_46-1510915933:295644..296347TCONS_00066798-exon-scaffold_46-1510915933:295644..296347Clytia hemisphaericaexon
TCONS_00066798-exon-scaffold_46-1491911889:295644..296347TCONS_00066798-exon-scaffold_46-1491911889:295644..296347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:295644..296347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.649201	0.802943	1.27509	1.42434	3.73038	3.0809	3.38657	0.964836	0.371085	1.24022	1.11705	0.679906	0.49709	0.076121	0.613626	0.769751	0.637182	0.362388	0	1.11751	0.0475871	0	0.816828	0.804218	1.04741	0.72883	1.89276	0.685974	1.12381	0.513386
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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