TCONS_00066799 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066799
Unique Name	TCONS_00066799
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	636

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_46:295699..301892-

transcript sequence

>TCONS_00066799 ID=TCONS_00066799|Name=TCONS_00066799|organism=Clytia hemisphaerica|type=transcript|length=636bp
ATTTATTGTAGTAATGTGTACAGAGTCTTATGTCTTAGCTGCCCAGTCAC
CATCAAGAACGACTTCCAGCAAAAGTTTTGATTAACAAAGACCATGGAAA
TTATCGCCAACTGGTGCTTGTGCTGTGCTGGTGCGTTTGTTTTGATTCTA
GAGAAGAGGAGAAATCTCAAACTGTCCTGAACAGTCAAACAACTTCTGCA
TTTATACCATCTGACCAAAACAAACCAGCAAACAAGAAAACCAAACAGTA
GAATAACCAGTGTCTTATTGTATCGATTGGCGAAGTTTGTGAAGTTGAAG
CACCTGAAGAATTGACTTTTTCAATCATCTGCTGTGGAGCTCAAGTTATC
TGAAATTGGAATCGTCTAAAAGACACGATGTGCAATGAATTGTAACAAAC
AGTGATTGTTGATTTGAAAGACGTTAAAGATGCGAAGTAATTATCTTGGG
AGTAAATGAActgaaaatcaattaaaacaatgtaacaaaaaagTTACAGA
ATTATGTCCATTATGTAAAGAAATGTGAAATATTTAGCTTAAAAAGTCAC
TCACACATTAAATGTGATGTGCCGTTTTTAGTTCTCCTCTGGGAAAACAA
AACCTGCTATGCCGGTTACGATTGATTCGTTTTTTA

Run BLAST on NCBI

transcript from alignment at scaffold_46:295699..301892-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066799 ID=TCONS_00066799|Name=TCONS_00066799|organism=Clytia hemisphaerica|type=transcript|length=6194bp|location=Sequence derived from alignment at scaffold_46:295699..301892- (Clytia hemisphaerica)
ATTTATTGTAGTAATGTGTACAGAGTCTTATGTCTTAGCTGCCCAGTCAC
CATCAAGAACGACTTCCAGCAAAAGTTTTGATTAACAAAGACCATGGAAA
TTATCGCCAACTGGTGCTTGTGCTGTGCTGGTGCGTTTGTTTTGATTCTA
GAGAAGAGGAGAAATCTCAAACTGTCCTGAACAGTCAAACAACTTCTGCA
TTTATACCATCTGACCAAAACAAACCAGCAAACAAGAAAACCAAACAGTA
GAATAACCAGTGTCTTATTGTATCGTGAGTATTCTTAAAAATTAGAGGTG
TATAATTTATAGTTGCCTGACCCTCCTGATATATCGCTATCGGTTCTGTT
CATGACTTTGTTTTGATTTGGGAACTTTTTTTCTATGTCCATCCAGCCAG
CACCAGCATGCATCAACTATGCGGACCGTAGCAAAAATAAAGATGGCTGA
TGTAACAACCATGGAATATTTACAGAAGTTTGATTGCCATGGCAGACGTT
ATTGGGCCATTCCAGTTTTTATTGGTTACCCCCATCCCCAATGGACGACA
TGGAATTTCCGTAGCAAATTGCTTTAAAGAAAGTCCGGAATTTCCGTAAC
AAATTTACAAATTACCTATCAAAACCCTGGAATTCAGTTACTGTAACTTA
AAAAAACCATGGAATTCCAATATACTTTAATACAAAATTAAATAAAATTC
ATGGAATTCCGGTACTTTCTCTTTAACACAGTCGGGTGTTTAAGATAAAA
ACTGCAATTATTGCTCTTTTCAAAAATTATTGCCGAAAACGGCAATTTTT
TTAACGATGAAATGCTGAATCAGCAGAAAAATAAAAAAGTAAATAAATGA
AAATTGCCGTTTTTGGCAATTATTGCCGTTTTTGCAAATAAATGTTGATT
TTATTATTGAACATGTGGTATTTGACACCCTCGCGATAAGTAGGCCCACT
GTGCCTCGTTTAGTTTTGTTTTCAATTGGTTTTTGTTGGAAATGCAGATA
GCAAAATTGAGTCATATGTAAACAAATTTACAACGGGGGTTTTGTCATAT
CTTTCTTATGGCGCGCGGAAGCGCCATTAAATACGATCTTTTTAAAACAA
CACCATCTCGTTTAAAACGATACTATCTTTAGTTTAAAACGATACTATCA
CATTTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
TTAAAAACATACTATCTCATTTAAAAAGAAACTATCATATTTGAACCGAA
AAGATAAATTGCCGTTTTCGGCAATAATTTCCGAAAAGAGCAATAATTGC
AGTTTTTATCTTAAACACCCGACTGTTTAAAGTTTGCCTGGAATTCCGTG
CCAAAATTTATTTCAAAAATTGATGTCATACATTAGGGGGTAATTTTTTT
TTCTGGAATGGCCCATTTGAAGGGTGTAGTATGGCAGTGGGTTCGAAATC
AAAACAACCATTTGACGTTTTCTGTGGTAAGTCTGAGTTTGGAAGGCTAC
CCTTAGACAATTTACCAGTGCACTAACAACCCCAATGCACGAACGAATGT
CTTTCAACGTGAAAAAAAAACAACCAAAAACAAACTTCTATAGAATTTCC
TTTGTGCAGCAGAATCCTCAAACTATCCCTTGCAATCTGTCCAAAAATTA
AATAAACAGAGTGGGCCTACTTATCGCGAGGGTGTCAAATACCACGTGTT
CAATAATAAAATCAACATTTATTTGATATAGTACTGCTCTCATGACTTTC
AAGGCTGTTCAAAAGATTTGTCCCTCTTATCTATCCAAACGTTTCGTTCT
CTGTGGAAATGGTGGTGAGCCCGATGCGCAAGGTGTAAATACTAGAGCTG
GATCAGAAAAGAAAATTCGGATACAGAGAACAAGAAATAAATTTGATTCT
AAAACCTTTTTATACAATGCTACAAACATTTGGAATAGTTTGCCTACCGA
CCTCCGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCTTCGTGGAAACAATTCTCCAGCTGC
CTAAAAGCTTTTGAATTTTTCGGAGCATGCCACTTAAAACATATGTTATT
ATTATTATTATTATTATTATCAAACAACACCAAACTAATTTTGAACGAGG
CTAAGTAAAAAAATCACGAAATTCAGGATTTTTGTCAACATGGCTGATCG
CAAGAGAAAATGTTTTTTATAAGAAGATTTGCTGCCTAAGAAGAGTTCTG
AAAATGACTTTTCTCTTTTAAAAACCTGTTATCTTCCATCACACAAAATT
TCATTGAAACATGTATATAAGTTTATTAATTCAAAATCAGTAGAAACATA
TCACCAGTACCTACCGTAACTTGGTCTAATGTCGACATCCCTCTTCCAAA
TTTGACATCCTTCTTTAGAGATAATCTGAGATAATAGGAATAGTAGGAAG
GTCGGAATTACTGATGGACAGCTTGGTAAAATACGTGTGTTTTCATCATG
AGAAATACCTCGCAAGTTATCAACGACGCAAACAATTAACAAAAGAAAAA
AACGAAAGATCAAAGAGATTTTCTTTAACCAAGATTTAAGATGCCTTCGC
CAATCTTGGGAATCTCCATTTTTTTATAAGTTATTTGCGCTTTTCGTGAC
GATTACTCTCATATAAATCTTATCACCACCAGGATTGGCGAAGTTTGTGA
AGTTGAAGCACCTGAAGAATTGACTTTTTCAATCATCTGCTGTGGAGCTC
AAGTTATCTGAAATTGGAATCGTCTAAAAGACACGATGTGCAATGAATTG
TAACAAACAGTGATTGTTGATTTGAAAGACGTTAAAGATGCGAAGTAATT
ATCTTGGGAGTAAATGAACTGAAAATCAATTAAAACAATGTAACAAAAAA
GTTACAGAATTATGTCCATTATGTAAAGAAATGTGAAATATTTAGCTTAA
AAAGTCACTCACACATTAAATGTGATGTGCCGTTTTTAGTTCTCCTCTGG
GAAAACAAAACCTGCTATGCCGGTTACGATTGATTCGTTTTTTA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041767	XLOC_041767	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066799-exon-scaffold_46-1575043694:301619..301892	TCONS_00066799-exon-scaffold_46-1575043694:301619..301892	Clytia hemisphaerica	exon
TCONS_00066799-exon-scaffold_46-1575043694:295699..296060	TCONS_00066799-exon-scaffold_46-1575043694:295699..296060	Clytia hemisphaerica	exon
TCONS_00066799-exon-scaffold_46-1510915933:301619..301892	TCONS_00066799-exon-scaffold_46-1510915933:301619..301892	Clytia hemisphaerica	exon
TCONS_00066799-exon-scaffold_46-1510915933:295699..296060	TCONS_00066799-exon-scaffold_46-1510915933:295699..296060	Clytia hemisphaerica	exon
TCONS_00066799-exon-scaffold_46-1491911889:301619..301892	TCONS_00066799-exon-scaffold_46-1491911889:301619..301892	Clytia hemisphaerica	exon
TCONS_00066799-exon-scaffold_46-1491911889:295699..296060	TCONS_00066799-exon-scaffold_46-1491911889:295699..296060	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:295699..301892 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.457933	0	0.510768	0	0	1.89802	0.651095	0	0	0	0.327528	0.683749	0	0.250661	0.744406	0.132331	0.284503	0	0.92452	0.535491	0	0.28412	0.366915	0.184705	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00066799 vs. Swiss-Prot (Human)

BLAST of TCONS_00066799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00066799 (transcript) - C. hemisphaerica