|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066803 ID=TCONS_00066803|Name=TCONS_00066803|organism=Clytia hemisphaerica|type=transcript|length=1917bp ATTAACTGTTAAGAGCGGTTTTCGCTCAACATATTGTAGAAAGATGTGTA AATATTTcgttaaaatatttaaaaaaattatgcaaaagtCATTTGGATGA AGGAACTTGTTTGGATATGGAGAATTATTATTTCATATTGGCGTTACTTT TAAGCTTATTTTGTTTGGTGAAAACAGaTGACATCTTCGCAATACTGGAG AAAAACAACTCCACTACAAACGTAACGCAACTAAAAATCTCTGCAGAAAG CGAGCTCCATAAAAAGTTATTTGGAAATTGTTCTCTCGAGCTGACAAAGA ACAAATTCTCACGTGAATGTACAATGTTTTCATTTCCGGACGAAACCAGT TCCATTACTGTCCGAATCGGGATGTCTTTGGTTCAGATTGAGGAATTCCA TGAGTTAAATGGCATACTCACCCTCCGAATGTACTATCGACAGATTTGGT GGAACAAGAAACTGACTTGGGACCCTGAAGAATATGAAAACATTTCTGAG ATCAATGTCAATCCGAAATTAGTTTGGTCACCTGATATCTATATTTATGA CAGTCGTGGCGAGGAAAAGATTCACGGTAGTTATTTGAACGTGGCAAATA CGTTAATCTCTTTACGCCATGACGGCCGTCACATGTGGTTAGCGCCGTTT AGATCGGAAACGAATTGTCCGTTACACGTCATCGATTATCCGTTCGACAT TCAACAATGCGATATCAGGCTAGGGAGCATGACACTAGACTCGAAGAAAT TGATTGTGAAATCAGAAGCTCCTTTTCTGGACTTGTCCATGTTCCACAaa atgcAATTACTGTCACTGAAAAGAAACATTTATTCACCATTCAACGCACC AAAGCAGAACACCATAAACACCCATCATTGAATATATAAAAGCACTTGGC AATCCAAAAAAAACACAGATCATTCCGAATGGAATATCCTATCTGCGAAC GGACGGAACgaaatgaacttcaaaaatccGGACATGAACAAATTCTCAGA AATCATTTATGTTGTTCGAATCAAACGAAAGCCATTATTTCTCATTACGT CATTAATCATGCCCAAATTTGGAATCACTCTGATCAGTCTCCTCGCTCAT GTTATCCCGGCGGCATCTGGCGAACGAATTCTGATGTTGATTGATTTGAT GTTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCG CTGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATT GGGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTT TGCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTT TAGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCC AAATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCA ACAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTT TGTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGAT TTATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCA GAAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGA TATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACA TTATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTA TAAAGCTTATAGTTGCTCACTAGTTAATTGAAATTTCCTGTAGAGATGAC ATATGTCTACAAAATGAATTTTGTAATTTGTTCTTTAAGTTACGTTAGAA TATTTGTTCTTTGCTTGCTACTTGATATAATGATACAAATCTGAAAGACT TTTTTTCTATTAGACTG Run BLAST on NCBI protein sequence of TCONS_00066803-protein >TCONS_00066803-protein ID=TCONS_00066803-protein|Name=TCONS_00066803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MNFKNPDMNKFSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPA ASGERILMLIDLMLVLALFLTNVMDIIPGAAGEVPFFTYFLLLTLIGMVT NIVTMVYTLSIYFANCTVLEMPRWLRYYVLDHLAPSMGYRDRYTTPKWMI KLMAIEEHCQRNQQQNPINSILGKRHPGRLWGATELRSNVIEIVDDLSQG HSLSSLNLCLLSQKLSLILDWLKEEERKRILKDDWLLVAKALDQVTLYIN CSILATVIFWFFYKAYSCSLVN Run BLAST on NCBI transcript from alignment at scaffold_46:362012..372127- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066803 ID=TCONS_00066803|Name=TCONS_00066803|organism=Clytia hemisphaerica|type=transcript|length=10116bp|location=Sequence derived from alignment at scaffold_46:362012..372127- (Clytia hemisphaerica) ATTAACTGTTAAGAGCGGTTTTCGCTCAACATATTGTAGAAAGATGTGTA
AATATTTCGTTAAAATATTTAAAAAAATTATGCAAAAGTCATTTGGATGA
AGGAACTTGTTTGGATATGGAGAATTATTATTTCATATTGGCGTTACTTT
TAAGCTTATTTTGTTTGGTGAAAACAGGTACAGTAACTTCTCGTCTTTTA
TCCCAATGAGGTAATATAGCTTCAATGTTCTTCAACATTCGAAAGTGGAG
TCTTCGACCTGTGCCGTTCAAGAGAAAACTAAGCCTTTAGATATCCGCCG
TATTTCGGCTGACAGATTTTGAAATTTGCAAGAGAAATTTTTTTCGAAAT
CAGTCGGAAAATGATAGTTTCAATCATGCGATTATGTGAAAACAACGCAT
GCCGAGGATAGATTCCTCTCTAATACTACCCTGAGTATCAGAGGTTAAGT
TTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATAGAAATTTTATCGC
GCATGTGTCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAAT
ATTACCATACTAGCCGGTACCCGGCGTCGCACGCCGGTTAAGCTGTAGCT
GAACGCACTAAAAGCCCCTTGGATGTTGAAGCTGGCTTAAAAAATGATCA
AATTAATAAAAAGATATCTCCAAATTTTGACTCTAACCCTCGAACCCTCC
CCCGGAGATCTTTTTCTCGCTTCGCTCGCATTAAATACGCCGTCCAGCTT
TCGACAATTTGAGAAAATGTCATGGTAGAGAGGAGTGAAATGTAGACATG
ACAATTCTTTATGAAAAAGTGGGAAAGCCACAAAGAATAGTGCAACTTTC
GAACTTTGTTTTTATCAGATTTAAAAAGATAAATAAGTCAATTCTAAATT
GCTTTTTTTAAAACTTTTTAATTTTTATGTTTTGATTTATATTTGAAATG
TTCTTTTCTATAAAAGAAACTTGTTTTGTTTTGAAAAGAATTCGAATGTC
ATTAATAAATACGATCGTTAAATACATTCTCGAAAATATTTCAAACAAAA
GAAAAGAAAAAGCAGAATCGGCCAAAGCTGGGCAGAAATTGAAATTACTA
AATGTAGATGGGCCTTAAATTTCAAAACAAAGGCTGAACAAAGTCTAAAC
CATGCTCTATTCGATCTGTCAATCAAAGCAAACTTATCGAGAACAAAACA
TTGCTTGCGAAATCGAAAGTGTGCAAATGGCGCGAATCCAATAGAACAAA
TTTGTGGAGCAAGAGACTAAAAGTCATAATTTTAAAACACAAACAAAGCG
AAAACGAAAGTGGTGACACACAGACACACAAAGCCAAAGCACCGCTATTA
ATATATAGATTAATGTCTAGCAGACTGTATCAGTATGCATTTTACTATTT
ACGAATTCCCCAGAAACCTCCAAATGTAATTGAAAGGAGTTTCTTTCAAA
AGAAATCTTTTACATATCCCCCAAATGTATAACATTAATTAGTAAACTTT
TGATTATGGAAATCTCACTTAATTGAATCAAAATAATAGACAGACTTTAT
GTTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGACTTTTT
GTAAGCTGTGTTTTTAACGACGGGAATAAAGATATCGACTATGACGCTCA
TCCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTCGCTGATTGCG
CGATGAATAGAATCTCGATTCGTCGGCACAGCGTAAAGCGTAAATATATG
ATTTTGAGCTGTGCTTTTCACGGTACTCTAATACTCGAGGTCGACACGAT
ATTTTTCGCAGCGAGGCTACCAGTCAACGCAGATGTGTTTGGACGTACTT
AGACTTAAGGTGAGGGTGTACTAAGGCTGTGTCTTTCTCCCAAAATACTA
ACTTAAGACTATAAATTTGAATTCACCTATTCGACCGTAGTCGCGCGGTC
AGGCGCGTGCCACTTAATTATTTAATCATCCTCCTAAACTCAATCCAATC
CTTTTTTGAAACCTTTTTCTGTTGTCTATAGGTGTGAAAGGACTGGGACG
GTTTTAGGGTGGTAAAATGGACAAAAAAAGCCAGTGCGGCAATTGGCGGC
TACGGTTGAAAAGGCGTATTTCCAATAATTTACAAAGAGATTAAAATTTA
GTTAAACTAGGTAAATTTAAGTAACCGTGTAACAAAAACATGTATAAAAT
CACCTATTTAAAAATTAAATGACCCTGCTATTAATATAAAATTTATTATT
TGGGAGTAACAAACCCAAGATGAGAGACAATGCGGCAAAAGTGGCCATTA
AAATCATCAGCATTTTATAACTCAAGATCACAATATTCCATAACAAGAGA
GTCAGTATCACCATCAACATATTACCATTGAGCATCAGAAATCCCAGTCC
TACTCCACGGTAGTGTGTTGGTAACAGTTCACTGATATATAAATACAATG
TCCATGGGCAAACGTATGCTAATAAACTTGTAAGATAGAGTATAATATTA
CTTGCGAGTTCGTTGTAATGTGTGCACAAGGTTATAAGGAATATCATCGA
CACCAAAACTTGTAGTCTGAATACACCTCTTGTCCCGCAAGTTGAAACGC
TTAGGGCGGCAAGGATAAGAAAAACAACGACGCAAAGGGCGGACAAAGGA
CGGAAAAAAGCGGGTAATTGTTCTTCGACGTCTGTGATTTGGCAATATGG
TGTCAATGTATTGTTTATTGCTATGGTGATATGAAATGTACTGAGTCCTG
GGAGTAACATTAATGCATAGATCTGGCGAGTAGTCGAAGCTATGGTCAAT
ACCAAGCCTAATAACAGGGATACAATGATGACATTCTCTGGACGCTTTCT
AAACATGAATCTCAAACTACCAAAAATGAAGTTTTTATAATTCATGGTGA
TCTTTTCTGGCAAACTTTGGCGACTGTCATCAGATAATTGGTTCAGTTTT
TTCACCACTTGATCGAAATCACCGGTACTGTTCAAATAACGGATACTCTC
TTCACCGGTGGTTAAAAGAAGGACCAGAACGAGGAGACCAGGTAAAAGTA
GAATTAAATGTCTGAAAAATGGTATTTTGATCCACGGTTTTAAATATATG
AGCATTGTTCCGATGAAGAGTCCAAAGGCTACGGATAGTAGCAAATATCT
ACTCCTTGTTTTCGAGGGAAGTGACTCTATGAAATGAACGAGGGAAATTG
TCATAAATCCGCCACACGTGAAAACAATGATAATCTTTGTTGCCAGGTCT
TCCCATAATATATCACCGGCTGCTATGGATATCAAACGAAAATAGATATA
AAGGAATAAGGTGAACTTCATCGTCAAAACTCGACCCTTGATGTCTGCTA
TTAGCCCGAAAACAAGGCTACCTGTTGCCATAGTAATTATCAAAACACAT
CGAATGATTGTAATCTCTAAAGATGAAAACTTGTGCTTGCATTGAAACTC
CGTGTATGAGATATCCATAAAGTTTGCCTCGATAAGCCAGCATGTTATGA
CAAGTGCTAGAAGAATGCATAGCTTGAAGATTTGGGTAACAGAGACACCA
AGATCGTTTAATACTTGCTCTAAAGTTCGTCCGCTTCGAACCATTTTGTC
ATATTCTGTTTGTTATACTTATACCTGAAAAAAAAAGAATTAATATTGTT
AGAAGGGCAAAACGAACAGGGTTTAAACGAGTTCGGTTAGATCGTCGAGG
TCACACAATGCTTACAAAAGGGTAGCGTGTGGCAACCAGTCTAAAACGCT
GAAAATTTCCAATCGATGAATCTGACGTTAGAGAAGACGTTTGTGACATA
ATCGGGAATCACACCGTTGTTGATCCAGCACAGGATATAGTAGTGACAAC
GCAACAGTCACCCCATTTCATTAACATATCATGATTGATAAAGATCCAAA
ACAAAGCGAAAAACAACCCCAATTCACCAAACTTTTCAGACTTCTGAATA
CAAGTTAATGTTTTCAAGAACCACAATAAGAAACCTTGCACATCTTTGTC
GAAAAAACTTGATAAATCGATTTAAAAACACACAAACTATACATTACAAG
AGAAAAGGGATGTGGCAAAAATACCTGATAGTCAAACGTCAAAAAAGACT
CTTTGATGCACATATATCGCGGTATGAAATTAATTTCCCATTTCCGCAGC
ACTTTTTTGTTGAAAAGCTAAATTGATTGAAAAGAAAATCTAATTAGACT
GTATTAATCTTTTCTGCTTTTGTCGATGTATATCCTGCGCATGCGCTTGG
GTTGATCAATTTGCAGGTTGTGTTAAACTGATTTTAAAGACACAACATTA
AAGTTTCCTGCAGGGCATTAAGAGAAGGATTAAAGTCAAGACTGATTAAA
AAATGGTTTTATAATACCTGAGTAGTGCCTGTTATCAAAATTCTAGTCGG
ATGACTAAAAATAAAGCTCATAAAAAACATGAATTTTCAGACATAAAAAG
ACAAAATATACTAAACCCAGAACGCAGAAATCGATCATAAATTTGATGTA
ACAGGGACATTTTCTCCATTAATCAAAATGTGACCTAGTCTACAAAATAG
ACAGATCCAGGCTTTTAGGCCTTACTCGAAGAGTAAGAGTTTTACGCTCG
AAACGAAGGAAGATATGACGTAGCCTAAATGTGACCTTATCATGGCCATT
ATTTGACCCCTAAGTTACCCTGTATCGTAAATATATAATTTCTACTCATA
CACGTTTTTTTTTTTATAAGGAACCTTAACTTTGCTCTGAGCCTGGAGTT
TCTTATTTTTACAGAGAATTTCAGTCTCAAAGTTCCTTATCGATTTCCTT
ACTACATAGGAAATTTTGAACTTTTTGCCCCTTGAAAGATCAAAATTTGG
TTAAATTAGTCCCAATAAGGTACATTATTTTCAAATCCACTTATTCTCAG
CCTGAGCAGTTCCTTAACAATTCCTTATTTTTTGAACCATTTTCAGCCTC
GAGTTCCTTATAAACATGTTCCTTATAAAAAAAAAACGTGTATATCCGTT
TACAGTTTCCTTGGGAAAGAGCCTCCGTTTGATTCAAAAATAGTTTTCGG
TGCACCACAGAGAAAATAATTTTACGAGAAAGGAAATAAATGATTGTCGC
CGGGATAATTACCCAAGTAATTTAGAATTTAATTATTATGTCAATCACGT
CTTGTAGAAAGATAAAGCGAAATCGGCAAATTATGTTGGATATCCATTGG
ATTTAAGTTGCGCCAGAGAAAGTACTGGCAAAAACTACTTCAGTTTGAAG
AGGAGGATTTGAGTAGGGGTGTTTCTTCTCAAACATAAAACTTTCGGGAC
TTTTATATTTCTAATGCTCTCTATAATACGAGTTTTGTTAAATACAGACT
GATACGCCTCTTTATCTTAGCAAGATGATCCCACCAGATATGATATGTGA
TAAGTTGTCAATATTGATTTCGAAGATGCTTTCGATACCATGGAGTATAC
TTAATATAAGTCTATTCATTGAGTTTGAACCCGAAGTGCTAGAAGCAAAT
CGTCAGCCTTTCCAAAGCAAGAAAAAGAGAAGCCTTAAAATTTTCGCCTT
ATTTCGGATGACGAATCTAGCGTTTGTATAAAAATCGAGGGGACAGCACA
ACTTTTGCAGTGCTTCAAATCGTAATGATATTCATCTTTAGCCTTCTGTT
ATGACTTACTGCGTATACCCCTGCGTTAAAAAATACACGAATGGGAGTTG
AGTTCGAGCTGAATAAAATGTGGAAGCCAATACATTGTATTGACACGTTC
ACAAAGACAGTCGATTAACATCTTTTAATTTAGTAAGTTTGCAACCGCAG
TCGAGGGTGATCCGAAGGCTCTTCTTTCGATAGCTAGCTAGCCGAATGTA
GAGGAGGGCGCCACTCCTTTCAACTTTTCAACAACTTTACACACCATAGC
TGGAAGATGCACCTTCATTATACCGCCGATAAAATATCTTGTAAACTCGA
ACCCCCTTCGAGGTAAAGGGTTGGTAGAAGTATTTATTCGAAATTACAGA
ATTGCTTTTTTTCTTATTTAGATGACATCTTCGCAATACTGGAGAAAAAC
AACTCCACTACAAACGTAACGCAACTAAAAATCTCTGCAGAAAGCGAGCT
CCATAAAAAGTTATTTGGAAATTGTTCTCTCGAGCTGACAAAGAACAAAT
TCTCACGTGAATGTACAATGTTTTCATTTCCGGACGAAACCAGTTCCATT
ACTGTCCGAATCGGGATGTCTTTGGTTCAGATTGAGGAATTCCATGAGTT
AAATGGCATACTCACCCTCCGAATGTACTATCGACAGGTAAGATTACCAT
TTTAGGTTCTTGTATCATGGTGGTAACTCTGATCTCATTTTCTAAATTCA
AACTGAATTACAGTTGACATTTTCTAATTCGACGTTACTGATCTATACAC
TCCATTATTCGATATTGTTAACCGGTTACTTTCTCGAAGCGGGCTACAAG
GCCTTTTGTGCAATGCAATTGGTTTATTGCGCATGACGACGGGCCTACAC
AGCACATAGTTACCCGTTGTTAGAAAAATTCATTGCGACGTCAGTTTTTT
CAAAGGAAAATGAACACTGCATTGACATCATTTTGTCTCAAATAATTACG
CATTATTGCCTAGCAAGCTTGGCCGTTACTTGACCTCGGGCAATATTTCT
CAGTACAGCCCTCACAAACTGGTCATTATATTGCATTAATATTGAGAGTC
ACCATCAACAAGAAACTCTCATAAAGGACGCTCTACTATTTGATACGCTC
TTTTATTTGGCGACAATTATAAAGCGTCAACTGTAGTGCAGAATTTTTTC
TCAGATTTGGTGGAACAAGAAACTGACTTGGGACCCTGAAGAATATGAAA
ACATTTCTGAGATCAATGTCAATCCGAAATTAGTTTGGTCACCTGATATC
TATATTTATGACAGGTAAATCTTCCGTTACAGTCAACTCAAATCCTTTAT
ATGACCTTTTTTTCTCATTGAATAGGCTTCTACTGCTCCCTCAATTGAGG
GTTCAAACACTCTTTATAAACGACACTACCTTCTTCGAACGATTGCAATT
CCATGACCTAGCTGGCACACAACGTTATTTGCAGCTTTTAGGTGTAAGAT
CGGGATAAGCCTTCTACCGGCAATATCATAGTGGTTTCTCTACCTAAAAC
GAAGTCATCATTCCAAAATTTTAAAGTAATATACTAATACAATATCCCAC
TAACCGAAATTCTATTTTAGTCGTGGCGAGGAAAAGATTCACGGTAGTTA
TTTGAACGTGGCAAATACGTTAATCTCTTTACGCCATGACGGCCGTCACA
TGTGGTTAGCGCCGTTTAGATCGGAAACGAATTGTCCGTTACACGTCATC
GATTATCCGTTCGACATTCAACAATGCGATATCAGGCTAGGGAGCATGAC
ACTAGACTCGAAGAAATTGATTGTGAAATCAGAAGCTCCTTTTCTGGACT
TGTCCATGTTCCACAGTAAGTATCATAATTGTTTTCTTCAAAATTCAATC
TAACACAGTTATTGTTACAGTGAAGTAGATAGAATCAGAAATTACTCAAG
AACATTCGAAAAAAATCGAGCGAAATATAGAGAAATAAAGAACTACCTAA
AGGGAACTTTTTTTGGCGGGAACTAATTTTGATGAGCGGCAAAAATCCTG
AAAATTTCTAATTTTGGCGAGAACTTATTTTGGCGAATGAGCAAAATATT
TAATTTTGGCGGGAAATAATTTTGGCGAATTTTGTCTAAATTCGCCGAAT
TCGCTAAAATTAGTTCCCGCCAAATAAGTTCCATTAAGGTAACTTGCAAT
CTTCAGTATTTCACAATTATTATTAATATCACGACACTGATTATTAGCAG
GTAGGACGAGAATCATAGATATGTATTTTTGAACATACTATTGACAGTCT
AAGCAATCCTAGGCAAATTTCGGCAAAATTGCAAAATATTTTGTTTTTAA
AATGAAAGCCCAGTAAAAACAAATCATTGTTGTCATAGACTGCAGTGGTA
ATAAAATTGTCTGACACAGGCTAATTTCAAAGCTTGTACTAACGACGTCA
TAATTTGGTTTACTTCAGTAAGGATATACAGCTTGATATGGATCAGCCTC
CATAGAGTATCTCTATGTAGAAAAATTTTATAAGAAATGCAATTACTGTC
ACTGAAAAGAAACATTTATTCACCATTCAACGCACCAAAGCAGAACACCA
TAAACACCCATCATTGAATATATAAAAGCACTTGGCAATCCAAAAAAAAC
ACAGGTACACTCTCACTCACTAGATTTTCAAATTAATGTATGTAAAACTA
AATTAGTTTCATTTCTTTTTCACCTTCAATGTGGCTTTGATATTTGTTTT
GTACCGCATGCTAAAAAGTTTGTCGTTACACCTCCGTCTCCATGCAAAAA
AGGATGGCCTCTATATTTAGTCATAACGAAAAACGTTTGGAACAAGACAC
GAGGCAGATAAAAAACTCCAAAATTATCGACACTCTTAAAGCTGTCTCTA
TATCCAGGCCCGGCGGAAGTGGAGAAATTTCAGACTCACAATTCCTATCG
AATTTTATCTCATTTTGAGCCTTCAGCCTTCCCACTTTTACAGTTGTTCC
GCCGGGCCTGATATTCAGAAAGTTTCGATATAACTGAAACGGATTTTTCG
GTGCCTTTTAATAATTTCAGCCTATTTTTCCTCTCCGTAACCACGAACGG
CTCCTAGTTCCCTTTGGCGACTAAATGATTTATAGCAATGTATTTTAATA
ATTCACAAGATCACTGACATTATCAATATAGCATAGTTCAATATTTTACA
GATCATTCCGAATGGAATATCCTATCTGCGAACGGACGGAACGAAATGAA
CTTCAAAAATCCGGACATGAACAAATTCTCAGAAATCATTTATGTTGTTC
GAATCAAACGAAAGCCATTATTTCTCATTACGTCATTAATCATGCCCAAA
TTTGGAATCACTCTGATCAGTCTCCTCGCTCATGTTATCCCGGCGGCATC
TGGTAAGAAATTGTCACTCTTTGTCCCATACAAATCAAAATGTAGAATAA
ACTTTTCCCTGTCAATTCTAAGTAAAACTTTACTATTTGTGCGAGTTTGA
TTTTTCCTGAGCTCATATACTTAAACTTAAATTCCCAATTTAATATCTAA
TTCTTACATTCATCTAATAAGAAATAAAATGCCAACAATTGGGACGATAA
TGTCGGCTCATAAACAAGTATATTTTATTTGACATTATTCCATATACACG
CTCTTGAAATTAGGGAAGTCTACTCAAAAGAAAACTATTGCGAATCTGTA
ATTTCTTTTCATCAATAGGCGAACGAATTCTGATGTTGATTGATTTGATG
TTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCGC
TGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATTG
GGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTTT
GCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTTT
AGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCCA
AATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCAA
CAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTTT
GTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGATT
TATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCAG
AAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGAT
ATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACAT
TATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTAT
AAAGCTTATAGTTGCTCACTAGTTAATTGAAATTTCCTGTAGAGATGACA
TATGTCTACAAAATGAATTTTGTAATTTGTTCTTTAAGTTACGTTAGAAT
ATTTGTTCTTTGCTTGCTACTTGATATAATGATACAAATCTGAAAGACTT
TTTTTCTATTAGACTG Coding sequence (CDS) from alignment at scaffold_46:362012..372127- >TCONS_00066803 ID=TCONS_00066803|Name=TCONS_00066803|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_46:362012..372127- (Clytia hemisphaerica) GCGAACGAATTCTGATGTTGATTGATTTGATGTTAGTATTGGCTTTATTT TTGACCAATGTTATGGATATCATCCCCGGCGCTGCTGGAGAGGTTCCTTT CTTTACGTACTTTCTTCTCTTGACATTGATTGGGATGGTGACCAATATAG TCACCATGGTCTATACTTTAAGTATCTACTTTGCTAATTGTACTGTCTTG GAAATGCCTCGCTGGTTACGATATTACGTTTTAGATCATCTAGCACCAAG TATGGGTTATCGAGATCGTTATACAACTCCCAAATGGATGATCAAGTTAA TGGCTATTGAAGAACATTGCCAGAGAAACCAACAACAGAATCCAATAAAT TCAATTCTCGGTAAAAGACACCCAGGACGTTTGTGGGGAGCTACTGAATT ACGGTCGAATGTTATAGAGATTGTAGATGATTTATCGCAAGGTCATTCAC TCTCGTCATTAAATTTATGCCTTTTATCCCAGAAATTATCCCTGATACTT GATTGGTTAAAGGAGGAAGAGAGAAAACGGATATTGAAAGATGATTGGTT ACTGGTTGCTAAGGCACTAGATCAAGTGACATTATACATCAACTGCTCTA TATTAGCGACAGTCATTTTTTGGTTCTTTTATAAAGCTTATAGTTGCTCA CTAGTTAATTGAATGAACTTCAAAAATCCGGACATGAACAAATTCTCAGA AATCATTTATGTTGTTCGAATCAAACGAAAGCCATTATTTCTCATTACGT CATTAATCATGCCCAAATTTGGAATCACTCTGATCAGTCTCCTCGCTCAT GTTATCCCGGCGGCATCTGGCGAACGAATTCTGATGTTGATTGATTTGAT GTTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCG CTGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATT GGGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTT TGCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTT TAGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCC AAATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCA ACAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTT TGTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGAT TTATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCA GAAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGA TATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACA TTATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTA TAAAGCTTATAGTTGCTCACTAGTTAATTGAATGAACTTCAAAAATCCGG ACATGAACAAATTCTCAGAAATCATTTATGTTGTTCGAATCAAACGAAAG CCATTATTTCTCATTACGTCATTAATCATGCCCAAATTTGGAATCACTCT GATCAGTCTCCTCGCTCATGTTATCCCGGCGGCATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066803-exon-scaffold_46-1575043694:371951..372127 | TCONS_00066803-exon-scaffold_46-1575043694:371951..372127 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1575043694:365841..366106 | TCONS_00066803-exon-scaffold_46-1575043694:365841..366106 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1575043694:365214..365323 | TCONS_00066803-exon-scaffold_46-1575043694:365214..365323 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1575043694:364663..364907 | TCONS_00066803-exon-scaffold_46-1575043694:364663..364907 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1575043694:363874..363993 | TCONS_00066803-exon-scaffold_46-1575043694:363874..363993 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1575043694:363126..363326 | TCONS_00066803-exon-scaffold_46-1575043694:363126..363326 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1575043694:362012..362809 | TCONS_00066803-exon-scaffold_46-1575043694:362012..362809 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:371951..372127 | TCONS_00066803-exon-scaffold_46-1510915933:371951..372127 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:365841..366106 | TCONS_00066803-exon-scaffold_46-1510915933:365841..366106 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:365214..365323 | TCONS_00066803-exon-scaffold_46-1510915933:365214..365323 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:364663..364907 | TCONS_00066803-exon-scaffold_46-1510915933:364663..364907 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:363874..363993 | TCONS_00066803-exon-scaffold_46-1510915933:363874..363993 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:363126..363326 | TCONS_00066803-exon-scaffold_46-1510915933:363126..363326 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1510915933:362012..362809 | TCONS_00066803-exon-scaffold_46-1510915933:362012..362809 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:371951..372127 | TCONS_00066803-exon-scaffold_46-1491911889:371951..372127 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:365841..366106 | TCONS_00066803-exon-scaffold_46-1491911889:365841..366106 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:365214..365323 | TCONS_00066803-exon-scaffold_46-1491911889:365214..365323 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:364663..364907 | TCONS_00066803-exon-scaffold_46-1491911889:364663..364907 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:363874..363993 | TCONS_00066803-exon-scaffold_46-1491911889:363874..363993 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:363126..363326 | TCONS_00066803-exon-scaffold_46-1491911889:363126..363326 | Clytia hemisphaerica | exon |
TCONS_00066803-exon-scaffold_46-1491911889:362012..362809 | TCONS_00066803-exon-scaffold_46-1491911889:362012..362809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_46 | supercontig | scaffold_46:362012..372127 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR006029 | Neurotrans-gated_channel_TM |
Vocabulary: Biological Process
Term | Definition |
GO:0006811 | ion transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006811 |
ion transport |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00066803 vs. Swiss-Prot (Human)
Match: ACHA4 (Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2) HSP 1 Score: 141.739 bits (356), Expect = 1.758e-35 Identity = 106/376 (28.19%), Postives = 175/376 (46.54%), Query Frame = 3
Query: 228 QLKISAESELHKKLFGNCSLELTKNKFSRECTMFSFPDETSSITVRIGMSLVQIEEFHELNGILTLRMYYRQIWWNKKLTWDPEEYENISEINVNPKLVWSPDIYIYDSRGEEKIHGSYLNVANTLISLRHDGRHMWLAPFRSETNCPLHVIDYPFDIQQCDIRLGSMTLDSKKLIVKSEAPFLDLSMFHKMQLLSLKRNIYSPFNAPKQNTINTHH*IYKSTWQSKKNTDHSEWNILSANGRNEMNFKNPDMNKFSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPAASGERXXXXXXXXXXXXXXXTNVMDIIPGAAGEVPFFTYFLLLTLIGMVTNIVTMVYTLSIYFANCTVLEMPRWLRYYVLD 1355
+ + AE L KKLF NK+SR S + VR G+S+ Q+ + E N ++T ++ +Q W + KL WDP +YEN++ I + +L+W PDI +Y++ G + T L HDGR W P +++C + V +PFD Q C ++ GS T D K+ + ++M ++ L W+S EW I+ A G + +I Y I+R PLF +LI+P I+ +++L +P+ GE+I + I ++L L +FL + +IIP + +P +LL T+I + +IV V+ L+++ + MP W+R LD
Sbjct: 31 ETRAHAEERLLKKLFSG------YNKWSRPVANIS-----DVVLVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHDYKLRWDPADYENVTSIRIPSELIWRPDIVLYNN-----ADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKAKIDL--------VNMHSRVDQLDF--------------------------WES------GEWVIVDAVGTYNTRKYECCAEIYPDITYAFVIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPRTHTMPTWVRRVFLD 350
The following BLAST results are available for this feature:
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