TCONS_00066803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066803
Unique NameTCONS_00066803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1917

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066803 ID=TCONS_00066803|Name=TCONS_00066803|organism=Clytia hemisphaerica|type=transcript|length=1917bp
ATTAACTGTTAAGAGCGGTTTTCGCTCAACATATTGTAGAAAGATGTGTA
AATATTTcgttaaaatatttaaaaaaattatgcaaaagtCATTTGGATGA
AGGAACTTGTTTGGATATGGAGAATTATTATTTCATATTGGCGTTACTTT
TAAGCTTATTTTGTTTGGTGAAAACAGaTGACATCTTCGCAATACTGGAG
AAAAACAACTCCACTACAAACGTAACGCAACTAAAAATCTCTGCAGAAAG
CGAGCTCCATAAAAAGTTATTTGGAAATTGTTCTCTCGAGCTGACAAAGA
ACAAATTCTCACGTGAATGTACAATGTTTTCATTTCCGGACGAAACCAGT
TCCATTACTGTCCGAATCGGGATGTCTTTGGTTCAGATTGAGGAATTCCA
TGAGTTAAATGGCATACTCACCCTCCGAATGTACTATCGACAGATTTGGT
GGAACAAGAAACTGACTTGGGACCCTGAAGAATATGAAAACATTTCTGAG
ATCAATGTCAATCCGAAATTAGTTTGGTCACCTGATATCTATATTTATGA
CAGTCGTGGCGAGGAAAAGATTCACGGTAGTTATTTGAACGTGGCAAATA
CGTTAATCTCTTTACGCCATGACGGCCGTCACATGTGGTTAGCGCCGTTT
AGATCGGAAACGAATTGTCCGTTACACGTCATCGATTATCCGTTCGACAT
TCAACAATGCGATATCAGGCTAGGGAGCATGACACTAGACTCGAAGAAAT
TGATTGTGAAATCAGAAGCTCCTTTTCTGGACTTGTCCATGTTCCACAaa
atgcAATTACTGTCACTGAAAAGAAACATTTATTCACCATTCAACGCACC
AAAGCAGAACACCATAAACACCCATCATTGAATATATAAAAGCACTTGGC
AATCCAAAAAAAACACAGATCATTCCGAATGGAATATCCTATCTGCGAAC
GGACGGAACgaaatgaacttcaaaaatccGGACATGAACAAATTCTCAGA
AATCATTTATGTTGTTCGAATCAAACGAAAGCCATTATTTCTCATTACGT
CATTAATCATGCCCAAATTTGGAATCACTCTGATCAGTCTCCTCGCTCAT
GTTATCCCGGCGGCATCTGGCGAACGAATTCTGATGTTGATTGATTTGAT
GTTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCG
CTGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATT
GGGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTT
TGCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTT
TAGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCC
AAATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCA
ACAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTT
TGTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGAT
TTATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCA
GAAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGA
TATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACA
TTATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTA
TAAAGCTTATAGTTGCTCACTAGTTAATTGAAATTTCCTGTAGAGATGAC
ATATGTCTACAAAATGAATTTTGTAATTTGTTCTTTAAGTTACGTTAGAA
TATTTGTTCTTTGCTTGCTACTTGATATAATGATACAAATCTGAAAGACT
TTTTTTCTATTAGACTG
Run BLAST on NCBI

protein sequence of TCONS_00066803-protein

>TCONS_00066803-protein ID=TCONS_00066803-protein|Name=TCONS_00066803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MNFKNPDMNKFSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPA
ASGERILMLIDLMLVLALFLTNVMDIIPGAAGEVPFFTYFLLLTLIGMVT
NIVTMVYTLSIYFANCTVLEMPRWLRYYVLDHLAPSMGYRDRYTTPKWMI
KLMAIEEHCQRNQQQNPINSILGKRHPGRLWGATELRSNVIEIVDDLSQG
HSLSSLNLCLLSQKLSLILDWLKEEERKRILKDDWLLVAKALDQVTLYIN
CSILATVIFWFFYKAYSCSLVN
Run BLAST on NCBI

transcript from alignment at scaffold_46:362012..372127-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066803 ID=TCONS_00066803|Name=TCONS_00066803|organism=Clytia hemisphaerica|type=transcript|length=10116bp|location=Sequence derived from alignment at scaffold_46:362012..372127- (Clytia hemisphaerica)
ATTAACTGTTAAGAGCGGTTTTCGCTCAACATATTGTAGAAAGATGTGTA
AATATTTCGTTAAAATATTTAAAAAAATTATGCAAAAGTCATTTGGATGA
AGGAACTTGTTTGGATATGGAGAATTATTATTTCATATTGGCGTTACTTT
TAAGCTTATTTTGTTTGGTGAAAACAGGTACAGTAACTTCTCGTCTTTTA
TCCCAATGAGGTAATATAGCTTCAATGTTCTTCAACATTCGAAAGTGGAG
TCTTCGACCTGTGCCGTTCAAGAGAAAACTAAGCCTTTAGATATCCGCCG
TATTTCGGCTGACAGATTTTGAAATTTGCAAGAGAAATTTTTTTCGAAAT
CAGTCGGAAAATGATAGTTTCAATCATGCGATTATGTGAAAACAACGCAT
GCCGAGGATAGATTCCTCTCTAATACTACCCTGAGTATCAGAGGTTAAGT
TTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATAGAAATTTTATCGC
GCATGTGTCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAAT
ATTACCATACTAGCCGGTACCCGGCGTCGCACGCCGGTTAAGCTGTAGCT
GAACGCACTAAAAGCCCCTTGGATGTTGAAGCTGGCTTAAAAAATGATCA
AATTAATAAAAAGATATCTCCAAATTTTGACTCTAACCCTCGAACCCTCC
CCCGGAGATCTTTTTCTCGCTTCGCTCGCATTAAATACGCCGTCCAGCTT
TCGACAATTTGAGAAAATGTCATGGTAGAGAGGAGTGAAATGTAGACATG
ACAATTCTTTATGAAAAAGTGGGAAAGCCACAAAGAATAGTGCAACTTTC
GAACTTTGTTTTTATCAGATTTAAAAAGATAAATAAGTCAATTCTAAATT
GCTTTTTTTAAAACTTTTTAATTTTTATGTTTTGATTTATATTTGAAATG
TTCTTTTCTATAAAAGAAACTTGTTTTGTTTTGAAAAGAATTCGAATGTC
ATTAATAAATACGATCGTTAAATACATTCTCGAAAATATTTCAAACAAAA
GAAAAGAAAAAGCAGAATCGGCCAAAGCTGGGCAGAAATTGAAATTACTA
AATGTAGATGGGCCTTAAATTTCAAAACAAAGGCTGAACAAAGTCTAAAC
CATGCTCTATTCGATCTGTCAATCAAAGCAAACTTATCGAGAACAAAACA
TTGCTTGCGAAATCGAAAGTGTGCAAATGGCGCGAATCCAATAGAACAAA
TTTGTGGAGCAAGAGACTAAAAGTCATAATTTTAAAACACAAACAAAGCG
AAAACGAAAGTGGTGACACACAGACACACAAAGCCAAAGCACCGCTATTA
ATATATAGATTAATGTCTAGCAGACTGTATCAGTATGCATTTTACTATTT
ACGAATTCCCCAGAAACCTCCAAATGTAATTGAAAGGAGTTTCTTTCAAA
AGAAATCTTTTACATATCCCCCAAATGTATAACATTAATTAGTAAACTTT
TGATTATGGAAATCTCACTTAATTGAATCAAAATAATAGACAGACTTTAT
GTTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGACTTTTT
GTAAGCTGTGTTTTTAACGACGGGAATAAAGATATCGACTATGACGCTCA
TCCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTCGCTGATTGCG
CGATGAATAGAATCTCGATTCGTCGGCACAGCGTAAAGCGTAAATATATG
ATTTTGAGCTGTGCTTTTCACGGTACTCTAATACTCGAGGTCGACACGAT
ATTTTTCGCAGCGAGGCTACCAGTCAACGCAGATGTGTTTGGACGTACTT
AGACTTAAGGTGAGGGTGTACTAAGGCTGTGTCTTTCTCCCAAAATACTA
ACTTAAGACTATAAATTTGAATTCACCTATTCGACCGTAGTCGCGCGGTC
AGGCGCGTGCCACTTAATTATTTAATCATCCTCCTAAACTCAATCCAATC
CTTTTTTGAAACCTTTTTCTGTTGTCTATAGGTGTGAAAGGACTGGGACG
GTTTTAGGGTGGTAAAATGGACAAAAAAAGCCAGTGCGGCAATTGGCGGC
TACGGTTGAAAAGGCGTATTTCCAATAATTTACAAAGAGATTAAAATTTA
GTTAAACTAGGTAAATTTAAGTAACCGTGTAACAAAAACATGTATAAAAT
CACCTATTTAAAAATTAAATGACCCTGCTATTAATATAAAATTTATTATT
TGGGAGTAACAAACCCAAGATGAGAGACAATGCGGCAAAAGTGGCCATTA
AAATCATCAGCATTTTATAACTCAAGATCACAATATTCCATAACAAGAGA
GTCAGTATCACCATCAACATATTACCATTGAGCATCAGAAATCCCAGTCC
TACTCCACGGTAGTGTGTTGGTAACAGTTCACTGATATATAAATACAATG
TCCATGGGCAAACGTATGCTAATAAACTTGTAAGATAGAGTATAATATTA
CTTGCGAGTTCGTTGTAATGTGTGCACAAGGTTATAAGGAATATCATCGA
CACCAAAACTTGTAGTCTGAATACACCTCTTGTCCCGCAAGTTGAAACGC
TTAGGGCGGCAAGGATAAGAAAAACAACGACGCAAAGGGCGGACAAAGGA
CGGAAAAAAGCGGGTAATTGTTCTTCGACGTCTGTGATTTGGCAATATGG
TGTCAATGTATTGTTTATTGCTATGGTGATATGAAATGTACTGAGTCCTG
GGAGTAACATTAATGCATAGATCTGGCGAGTAGTCGAAGCTATGGTCAAT
ACCAAGCCTAATAACAGGGATACAATGATGACATTCTCTGGACGCTTTCT
AAACATGAATCTCAAACTACCAAAAATGAAGTTTTTATAATTCATGGTGA
TCTTTTCTGGCAAACTTTGGCGACTGTCATCAGATAATTGGTTCAGTTTT
TTCACCACTTGATCGAAATCACCGGTACTGTTCAAATAACGGATACTCTC
TTCACCGGTGGTTAAAAGAAGGACCAGAACGAGGAGACCAGGTAAAAGTA
GAATTAAATGTCTGAAAAATGGTATTTTGATCCACGGTTTTAAATATATG
AGCATTGTTCCGATGAAGAGTCCAAAGGCTACGGATAGTAGCAAATATCT
ACTCCTTGTTTTCGAGGGAAGTGACTCTATGAAATGAACGAGGGAAATTG
TCATAAATCCGCCACACGTGAAAACAATGATAATCTTTGTTGCCAGGTCT
TCCCATAATATATCACCGGCTGCTATGGATATCAAACGAAAATAGATATA
AAGGAATAAGGTGAACTTCATCGTCAAAACTCGACCCTTGATGTCTGCTA
TTAGCCCGAAAACAAGGCTACCTGTTGCCATAGTAATTATCAAAACACAT
CGAATGATTGTAATCTCTAAAGATGAAAACTTGTGCTTGCATTGAAACTC
CGTGTATGAGATATCCATAAAGTTTGCCTCGATAAGCCAGCATGTTATGA
CAAGTGCTAGAAGAATGCATAGCTTGAAGATTTGGGTAACAGAGACACCA
AGATCGTTTAATACTTGCTCTAAAGTTCGTCCGCTTCGAACCATTTTGTC
ATATTCTGTTTGTTATACTTATACCTGAAAAAAAAAGAATTAATATTGTT
AGAAGGGCAAAACGAACAGGGTTTAAACGAGTTCGGTTAGATCGTCGAGG
TCACACAATGCTTACAAAAGGGTAGCGTGTGGCAACCAGTCTAAAACGCT
GAAAATTTCCAATCGATGAATCTGACGTTAGAGAAGACGTTTGTGACATA
ATCGGGAATCACACCGTTGTTGATCCAGCACAGGATATAGTAGTGACAAC
GCAACAGTCACCCCATTTCATTAACATATCATGATTGATAAAGATCCAAA
ACAAAGCGAAAAACAACCCCAATTCACCAAACTTTTCAGACTTCTGAATA
CAAGTTAATGTTTTCAAGAACCACAATAAGAAACCTTGCACATCTTTGTC
GAAAAAACTTGATAAATCGATTTAAAAACACACAAACTATACATTACAAG
AGAAAAGGGATGTGGCAAAAATACCTGATAGTCAAACGTCAAAAAAGACT
CTTTGATGCACATATATCGCGGTATGAAATTAATTTCCCATTTCCGCAGC
ACTTTTTTGTTGAAAAGCTAAATTGATTGAAAAGAAAATCTAATTAGACT
GTATTAATCTTTTCTGCTTTTGTCGATGTATATCCTGCGCATGCGCTTGG
GTTGATCAATTTGCAGGTTGTGTTAAACTGATTTTAAAGACACAACATTA
AAGTTTCCTGCAGGGCATTAAGAGAAGGATTAAAGTCAAGACTGATTAAA
AAATGGTTTTATAATACCTGAGTAGTGCCTGTTATCAAAATTCTAGTCGG
ATGACTAAAAATAAAGCTCATAAAAAACATGAATTTTCAGACATAAAAAG
ACAAAATATACTAAACCCAGAACGCAGAAATCGATCATAAATTTGATGTA
ACAGGGACATTTTCTCCATTAATCAAAATGTGACCTAGTCTACAAAATAG
ACAGATCCAGGCTTTTAGGCCTTACTCGAAGAGTAAGAGTTTTACGCTCG
AAACGAAGGAAGATATGACGTAGCCTAAATGTGACCTTATCATGGCCATT
ATTTGACCCCTAAGTTACCCTGTATCGTAAATATATAATTTCTACTCATA
CACGTTTTTTTTTTTATAAGGAACCTTAACTTTGCTCTGAGCCTGGAGTT
TCTTATTTTTACAGAGAATTTCAGTCTCAAAGTTCCTTATCGATTTCCTT
ACTACATAGGAAATTTTGAACTTTTTGCCCCTTGAAAGATCAAAATTTGG
TTAAATTAGTCCCAATAAGGTACATTATTTTCAAATCCACTTATTCTCAG
CCTGAGCAGTTCCTTAACAATTCCTTATTTTTTGAACCATTTTCAGCCTC
GAGTTCCTTATAAACATGTTCCTTATAAAAAAAAAACGTGTATATCCGTT
TACAGTTTCCTTGGGAAAGAGCCTCCGTTTGATTCAAAAATAGTTTTCGG
TGCACCACAGAGAAAATAATTTTACGAGAAAGGAAATAAATGATTGTCGC
CGGGATAATTACCCAAGTAATTTAGAATTTAATTATTATGTCAATCACGT
CTTGTAGAAAGATAAAGCGAAATCGGCAAATTATGTTGGATATCCATTGG
ATTTAAGTTGCGCCAGAGAAAGTACTGGCAAAAACTACTTCAGTTTGAAG
AGGAGGATTTGAGTAGGGGTGTTTCTTCTCAAACATAAAACTTTCGGGAC
TTTTATATTTCTAATGCTCTCTATAATACGAGTTTTGTTAAATACAGACT
GATACGCCTCTTTATCTTAGCAAGATGATCCCACCAGATATGATATGTGA
TAAGTTGTCAATATTGATTTCGAAGATGCTTTCGATACCATGGAGTATAC
TTAATATAAGTCTATTCATTGAGTTTGAACCCGAAGTGCTAGAAGCAAAT
CGTCAGCCTTTCCAAAGCAAGAAAAAGAGAAGCCTTAAAATTTTCGCCTT
ATTTCGGATGACGAATCTAGCGTTTGTATAAAAATCGAGGGGACAGCACA
ACTTTTGCAGTGCTTCAAATCGTAATGATATTCATCTTTAGCCTTCTGTT
ATGACTTACTGCGTATACCCCTGCGTTAAAAAATACACGAATGGGAGTTG
AGTTCGAGCTGAATAAAATGTGGAAGCCAATACATTGTATTGACACGTTC
ACAAAGACAGTCGATTAACATCTTTTAATTTAGTAAGTTTGCAACCGCAG
TCGAGGGTGATCCGAAGGCTCTTCTTTCGATAGCTAGCTAGCCGAATGTA
GAGGAGGGCGCCACTCCTTTCAACTTTTCAACAACTTTACACACCATAGC
TGGAAGATGCACCTTCATTATACCGCCGATAAAATATCTTGTAAACTCGA
ACCCCCTTCGAGGTAAAGGGTTGGTAGAAGTATTTATTCGAAATTACAGA
ATTGCTTTTTTTCTTATTTAGATGACATCTTCGCAATACTGGAGAAAAAC
AACTCCACTACAAACGTAACGCAACTAAAAATCTCTGCAGAAAGCGAGCT
CCATAAAAAGTTATTTGGAAATTGTTCTCTCGAGCTGACAAAGAACAAAT
TCTCACGTGAATGTACAATGTTTTCATTTCCGGACGAAACCAGTTCCATT
ACTGTCCGAATCGGGATGTCTTTGGTTCAGATTGAGGAATTCCATGAGTT
AAATGGCATACTCACCCTCCGAATGTACTATCGACAGGTAAGATTACCAT
TTTAGGTTCTTGTATCATGGTGGTAACTCTGATCTCATTTTCTAAATTCA
AACTGAATTACAGTTGACATTTTCTAATTCGACGTTACTGATCTATACAC
TCCATTATTCGATATTGTTAACCGGTTACTTTCTCGAAGCGGGCTACAAG
GCCTTTTGTGCAATGCAATTGGTTTATTGCGCATGACGACGGGCCTACAC
AGCACATAGTTACCCGTTGTTAGAAAAATTCATTGCGACGTCAGTTTTTT
CAAAGGAAAATGAACACTGCATTGACATCATTTTGTCTCAAATAATTACG
CATTATTGCCTAGCAAGCTTGGCCGTTACTTGACCTCGGGCAATATTTCT
CAGTACAGCCCTCACAAACTGGTCATTATATTGCATTAATATTGAGAGTC
ACCATCAACAAGAAACTCTCATAAAGGACGCTCTACTATTTGATACGCTC
TTTTATTTGGCGACAATTATAAAGCGTCAACTGTAGTGCAGAATTTTTTC
TCAGATTTGGTGGAACAAGAAACTGACTTGGGACCCTGAAGAATATGAAA
ACATTTCTGAGATCAATGTCAATCCGAAATTAGTTTGGTCACCTGATATC
TATATTTATGACAGGTAAATCTTCCGTTACAGTCAACTCAAATCCTTTAT
ATGACCTTTTTTTCTCATTGAATAGGCTTCTACTGCTCCCTCAATTGAGG
GTTCAAACACTCTTTATAAACGACACTACCTTCTTCGAACGATTGCAATT
CCATGACCTAGCTGGCACACAACGTTATTTGCAGCTTTTAGGTGTAAGAT
CGGGATAAGCCTTCTACCGGCAATATCATAGTGGTTTCTCTACCTAAAAC
GAAGTCATCATTCCAAAATTTTAAAGTAATATACTAATACAATATCCCAC
TAACCGAAATTCTATTTTAGTCGTGGCGAGGAAAAGATTCACGGTAGTTA
TTTGAACGTGGCAAATACGTTAATCTCTTTACGCCATGACGGCCGTCACA
TGTGGTTAGCGCCGTTTAGATCGGAAACGAATTGTCCGTTACACGTCATC
GATTATCCGTTCGACATTCAACAATGCGATATCAGGCTAGGGAGCATGAC
ACTAGACTCGAAGAAATTGATTGTGAAATCAGAAGCTCCTTTTCTGGACT
TGTCCATGTTCCACAGTAAGTATCATAATTGTTTTCTTCAAAATTCAATC
TAACACAGTTATTGTTACAGTGAAGTAGATAGAATCAGAAATTACTCAAG
AACATTCGAAAAAAATCGAGCGAAATATAGAGAAATAAAGAACTACCTAA
AGGGAACTTTTTTTGGCGGGAACTAATTTTGATGAGCGGCAAAAATCCTG
AAAATTTCTAATTTTGGCGAGAACTTATTTTGGCGAATGAGCAAAATATT
TAATTTTGGCGGGAAATAATTTTGGCGAATTTTGTCTAAATTCGCCGAAT
TCGCTAAAATTAGTTCCCGCCAAATAAGTTCCATTAAGGTAACTTGCAAT
CTTCAGTATTTCACAATTATTATTAATATCACGACACTGATTATTAGCAG
GTAGGACGAGAATCATAGATATGTATTTTTGAACATACTATTGACAGTCT
AAGCAATCCTAGGCAAATTTCGGCAAAATTGCAAAATATTTTGTTTTTAA
AATGAAAGCCCAGTAAAAACAAATCATTGTTGTCATAGACTGCAGTGGTA
ATAAAATTGTCTGACACAGGCTAATTTCAAAGCTTGTACTAACGACGTCA
TAATTTGGTTTACTTCAGTAAGGATATACAGCTTGATATGGATCAGCCTC
CATAGAGTATCTCTATGTAGAAAAATTTTATAAGAAATGCAATTACTGTC
ACTGAAAAGAAACATTTATTCACCATTCAACGCACCAAAGCAGAACACCA
TAAACACCCATCATTGAATATATAAAAGCACTTGGCAATCCAAAAAAAAC
ACAGGTACACTCTCACTCACTAGATTTTCAAATTAATGTATGTAAAACTA
AATTAGTTTCATTTCTTTTTCACCTTCAATGTGGCTTTGATATTTGTTTT
GTACCGCATGCTAAAAAGTTTGTCGTTACACCTCCGTCTCCATGCAAAAA
AGGATGGCCTCTATATTTAGTCATAACGAAAAACGTTTGGAACAAGACAC
GAGGCAGATAAAAAACTCCAAAATTATCGACACTCTTAAAGCTGTCTCTA
TATCCAGGCCCGGCGGAAGTGGAGAAATTTCAGACTCACAATTCCTATCG
AATTTTATCTCATTTTGAGCCTTCAGCCTTCCCACTTTTACAGTTGTTCC
GCCGGGCCTGATATTCAGAAAGTTTCGATATAACTGAAACGGATTTTTCG
GTGCCTTTTAATAATTTCAGCCTATTTTTCCTCTCCGTAACCACGAACGG
CTCCTAGTTCCCTTTGGCGACTAAATGATTTATAGCAATGTATTTTAATA
ATTCACAAGATCACTGACATTATCAATATAGCATAGTTCAATATTTTACA
GATCATTCCGAATGGAATATCCTATCTGCGAACGGACGGAACGAAATGAA
CTTCAAAAATCCGGACATGAACAAATTCTCAGAAATCATTTATGTTGTTC
GAATCAAACGAAAGCCATTATTTCTCATTACGTCATTAATCATGCCCAAA
TTTGGAATCACTCTGATCAGTCTCCTCGCTCATGTTATCCCGGCGGCATC
TGGTAAGAAATTGTCACTCTTTGTCCCATACAAATCAAAATGTAGAATAA
ACTTTTCCCTGTCAATTCTAAGTAAAACTTTACTATTTGTGCGAGTTTGA
TTTTTCCTGAGCTCATATACTTAAACTTAAATTCCCAATTTAATATCTAA
TTCTTACATTCATCTAATAAGAAATAAAATGCCAACAATTGGGACGATAA
TGTCGGCTCATAAACAAGTATATTTTATTTGACATTATTCCATATACACG
CTCTTGAAATTAGGGAAGTCTACTCAAAAGAAAACTATTGCGAATCTGTA
ATTTCTTTTCATCAATAGGCGAACGAATTCTGATGTTGATTGATTTGATG
TTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCGC
TGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATTG
GGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTTT
GCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTTT
AGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCCA
AATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCAA
CAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTTT
GTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGATT
TATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCAG
AAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGAT
ATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACAT
TATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTAT
AAAGCTTATAGTTGCTCACTAGTTAATTGAAATTTCCTGTAGAGATGACA
TATGTCTACAAAATGAATTTTGTAATTTGTTCTTTAAGTTACGTTAGAAT
ATTTGTTCTTTGCTTGCTACTTGATATAATGATACAAATCTGAAAGACTT
TTTTTCTATTAGACTG

Coding sequence (CDS) from alignment at scaffold_46:362012..372127-

>TCONS_00066803 ID=TCONS_00066803|Name=TCONS_00066803|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at scaffold_46:362012..372127- (Clytia hemisphaerica)
GCGAACGAATTCTGATGTTGATTGATTTGATGTTAGTATTGGCTTTATTT
TTGACCAATGTTATGGATATCATCCCCGGCGCTGCTGGAGAGGTTCCTTT
CTTTACGTACTTTCTTCTCTTGACATTGATTGGGATGGTGACCAATATAG
TCACCATGGTCTATACTTTAAGTATCTACTTTGCTAATTGTACTGTCTTG
GAAATGCCTCGCTGGTTACGATATTACGTTTTAGATCATCTAGCACCAAG
TATGGGTTATCGAGATCGTTATACAACTCCCAAATGGATGATCAAGTTAA
TGGCTATTGAAGAACATTGCCAGAGAAACCAACAACAGAATCCAATAAAT
TCAATTCTCGGTAAAAGACACCCAGGACGTTTGTGGGGAGCTACTGAATT
ACGGTCGAATGTTATAGAGATTGTAGATGATTTATCGCAAGGTCATTCAC
TCTCGTCATTAAATTTATGCCTTTTATCCCAGAAATTATCCCTGATACTT
GATTGGTTAAAGGAGGAAGAGAGAAAACGGATATTGAAAGATGATTGGTT
ACTGGTTGCTAAGGCACTAGATCAAGTGACATTATACATCAACTGCTCTA
TATTAGCGACAGTCATTTTTTGGTTCTTTTATAAAGCTTATAGTTGCTCA
CTAGTTAATTGAATGAACTTCAAAAATCCGGACATGAACAAATTCTCAGA
AATCATTTATGTTGTTCGAATCAAACGAAAGCCATTATTTCTCATTACGT
CATTAATCATGCCCAAATTTGGAATCACTCTGATCAGTCTCCTCGCTCAT
GTTATCCCGGCGGCATCTGGCGAACGAATTCTGATGTTGATTGATTTGAT
GTTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCG
CTGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATT
GGGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTT
TGCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTT
TAGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCC
AAATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCA
ACAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTT
TGTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGAT
TTATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCA
GAAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGA
TATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACA
TTATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTA
TAAAGCTTATAGTTGCTCACTAGTTAATTGAATGAACTTCAAAAATCCGG
ACATGAACAAATTCTCAGAAATCATTTATGTTGTTCGAATCAAACGAAAG
CCATTATTTCTCATTACGTCATTAATCATGCCCAAATTTGGAATCACTCT
GATCAGTCTCCTCGCTCATGTTATCCCGGCGGCATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041768XLOC_041768Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066803-proteinTCONS_00066803-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066803-exon-scaffold_46-1575043694:371951..372127TCONS_00066803-exon-scaffold_46-1575043694:371951..372127Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1575043694:365841..366106TCONS_00066803-exon-scaffold_46-1575043694:365841..366106Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1575043694:365214..365323TCONS_00066803-exon-scaffold_46-1575043694:365214..365323Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1575043694:364663..364907TCONS_00066803-exon-scaffold_46-1575043694:364663..364907Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1575043694:363874..363993TCONS_00066803-exon-scaffold_46-1575043694:363874..363993Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1575043694:363126..363326TCONS_00066803-exon-scaffold_46-1575043694:363126..363326Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1575043694:362012..362809TCONS_00066803-exon-scaffold_46-1575043694:362012..362809Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:371951..372127TCONS_00066803-exon-scaffold_46-1510915933:371951..372127Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:365841..366106TCONS_00066803-exon-scaffold_46-1510915933:365841..366106Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:365214..365323TCONS_00066803-exon-scaffold_46-1510915933:365214..365323Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:364663..364907TCONS_00066803-exon-scaffold_46-1510915933:364663..364907Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:363874..363993TCONS_00066803-exon-scaffold_46-1510915933:363874..363993Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:363126..363326TCONS_00066803-exon-scaffold_46-1510915933:363126..363326Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1510915933:362012..362809TCONS_00066803-exon-scaffold_46-1510915933:362012..362809Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:371951..372127TCONS_00066803-exon-scaffold_46-1491911889:371951..372127Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:365841..366106TCONS_00066803-exon-scaffold_46-1491911889:365841..366106Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:365214..365323TCONS_00066803-exon-scaffold_46-1491911889:365214..365323Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:364663..364907TCONS_00066803-exon-scaffold_46-1491911889:364663..364907Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:363874..363993TCONS_00066803-exon-scaffold_46-1491911889:363874..363993Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:363126..363326TCONS_00066803-exon-scaffold_46-1491911889:363126..363326Clytia hemisphaericaexon
TCONS_00066803-exon-scaffold_46-1491911889:362012..362809TCONS_00066803-exon-scaffold_46-1491911889:362012..362809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:362012..372127 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.07298	0.858226	1.35693	1.30509	0	0.265953	0.181068	0	0	0	0	0	0	0	0	0	0	0	0.205069	0.302561	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006029Neurotrans-gated_channel_TM
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00066803 vs. Swiss-Prot (Human)
Match: ACHA4 (Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.758e-35
Identity = 106/376 (28.19%), Postives = 175/376 (46.54%), Query Frame = 3 
Query:  228 QLKISAESELHKKLFGNCSLELTKNKFSRECTMFSFPDETSSITVRIGMSLVQIEEFHELNGILTLRMYYRQIWWNKKLTWDPEEYENISEINVNPKLVWSPDIYIYDSRGEEKIHGSYLNVANTLISLRHDGRHMWLAPFRSETNCPLHVIDYPFDIQQCDIRLGSMTLDSKKLIVKSEAPFLDLSMFHKMQLLSLKRNIYSPFNAPKQNTINTHH*IYKSTWQSKKNTDHSEWNILSANGRNEMNFKNPDMNKFSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPAASGERXXXXXXXXXXXXXXXTNVMDIIPGAAGEVPFFTYFLLLTLIGMVTNIVTMVYTLSIYFANCTVLEMPRWLRYYVLD 1355
            + +  AE  L KKLF         NK+SR     S       + VR G+S+ Q+ +  E N ++T  ++ +Q W + KL WDP +YEN++ I +  +L+W PDI +Y++       G +     T   L HDGR  W  P   +++C + V  +PFD Q C ++ GS T D  K+ +        ++M  ++  L                            W+S       EW I+ A G             + +I Y   I+R PLF   +LI+P   I+ +++L   +P+  GE+I + I ++L L +FL  + +IIP  +  +P    +LL T+I +  +IV  V+ L+++  +     MP W+R   LD
Sbjct:   31 ETRAHAEERLLKKLFSG------YNKWSRPVANIS-----DVVLVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHDYKLRWDPADYENVTSIRIPSELIWRPDIVLYNN-----ADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKAKIDL--------VNMHSRVDQLDF--------------------------WES------GEWVIVDAVGTYNTRKYECCAEIYPDITYAFVIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPRTHTMPTWVRRVFLD 350
The following BLAST results are available for this feature:
BLAST of TCONS_00066803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA41.758e-3528.19Neuronal acetylcholine receptor subunit alpha-4 OS... [more]
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